Wall clock time and date at job start Sat Apr 11 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47650 * 2 1 4 4 C 1.47209 * 109.46787 * 240.00390 * 2 1 3 5 5 N 2.60805 * 109.46750 * 240.00333 * 2 1 3 6 6 C 1.50701 * 109.47384 * 120.00747 * 2 1 3 7 7 O 1.21276 * 120.00304 * 85.97357 * 6 2 1 8 8 N 1.34780 * 119.99522 * 265.97136 * 6 2 1 9 9 C 1.47025 * 125.64892 * 4.69772 * 8 6 2 10 10 C 1.54335 * 107.26325 * 178.85080 * 9 8 6 11 11 C 1.55161 * 103.02333 * 338.14615 * 10 9 8 12 12 O 1.42904 * 111.03422 * 277.21786 * 11 10 9 13 13 C 1.53001 * 111.00705 * 153.38011 * 11 10 9 14 14 N 1.46498 * 109.46738 * 67.80350 * 13 11 10 15 15 C 1.34775 * 119.99659 * 180.02562 * 14 13 11 16 16 O 1.21278 * 120.00450 * 359.97438 * 15 14 13 17 17 C 1.50703 * 120.00062 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47008 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00018 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99780 * 359.97438 * 19 18 17 21 21 C 1.38793 * 120.00579 * 180.02562 * 19 18 17 22 22 N 1.31631 * 120.00437 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99607 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47222 * 90.00178 * 23 21 19 25 25 H 1.48497 * 109.46979 * 210.00142 * 23 21 19 26 26 H 1.48497 * 109.47239 * 329.99954 * 23 21 19 27 27 C 1.47423 * 125.64636 * 185.01095 * 8 6 2 28 28 H 1.09000 * 109.47488 * 177.79598 * 1 2 3 29 29 H 1.09008 * 109.46566 * 297.78907 * 1 2 3 30 30 H 1.08994 * 109.47591 * 57.78931 * 1 2 3 31 31 H 1.08991 * 109.88357 * 298.39551 * 9 8 6 32 32 H 1.09000 * 109.87829 * 59.56425 * 9 8 6 33 33 H 1.09000 * 110.85210 * 219.67752 * 10 9 8 34 34 H 1.09004 * 110.66649 * 96.52243 * 10 9 8 35 35 H 0.96697 * 113.99601 * 292.21415 * 12 11 10 36 36 H 1.08999 * 109.46997 * 187.80321 * 13 11 10 37 37 H 1.08998 * 109.46967 * 307.80764 * 13 11 10 38 38 H 0.97003 * 120.00866 * 359.97438 * 14 13 11 39 39 H 1.08999 * 109.47071 * 299.99484 * 17 15 14 40 40 H 1.08992 * 109.47393 * 59.99419 * 17 15 14 41 41 H 0.97004 * 119.99969 * 179.97438 * 22 21 19 42 42 H 1.08997 * 110.36635 * 322.93312 * 27 8 6 43 43 H 1.09008 * 110.36680 * 85.24918 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0206 -0.6939 -1.2020 5 7 2.3991 -1.2294 -2.1296 6 6 2.0324 -0.7106 1.2304 7 8 2.1650 -1.9160 1.2228 8 7 2.3343 -0.0063 2.3391 9 6 2.1299 1.4386 2.5186 10 6 2.5923 1.7925 3.9479 11 6 2.5122 0.4314 4.6884 12 8 1.1801 0.1671 5.1333 13 6 3.4973 0.3845 5.8581 14 7 3.0709 1.3288 6.8938 15 6 3.7923 1.4597 8.0246 16 8 4.7942 0.7954 8.1852 17 6 3.3533 2.4306 9.0903 18 16 4.5189 2.3753 10.4740 19 6 3.7852 3.5711 11.5401 20 1 2.8802 4.0788 11.2403 21 6 4.3706 3.8614 12.7646 22 7 3.8228 4.7550 13.5608 23 14 5.9361 2.9837 13.2827 24 1 7.1148 3.7572 12.8163 25 1 5.9730 2.8697 14.7628 26 1 5.9651 1.6264 12.6809 27 6 2.9302 -0.5560 3.5704 28 1 -0.3634 -1.0269 -0.0395 29 1 -0.3633 0.4792 0.9092 30 1 -0.3634 0.5477 -0.8694 31 1 2.7216 1.9902 1.7882 32 1 1.0735 1.6808 2.4021 33 1 1.9207 2.5198 4.4041 34 1 3.6159 2.1671 3.9394 35 1 0.8743 0.7603 5.8331 36 1 3.5213 -0.6232 6.2728 37 1 4.4924 0.6564 5.5061 38 1 2.2697 1.8605 6.7653 39 1 3.3286 3.4384 8.6758 40 1 2.3585 2.1583 9.4426 41 1 4.2318 4.9576 14.4167 42 1 2.5319 -1.5500 3.7736 43 1 4.0162 -0.5922 3.4828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722271465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:55 Heat of formation + Delta-G solvation = -87.219847 kcal Electronic energy + Delta-G solvation = -26405.947237 eV Core-core repulsion = 22384.863613 eV Total energy + Delta-G solvation = -4021.083624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.15621 -39.82442 -38.76277 -37.05072 -36.11819 -34.38401 -33.89838 -32.50223 -31.60821 -30.36720 -29.32138 -26.57870 -25.70328 -25.28011 -23.81430 -21.35590 -20.89610 -20.43133 -18.46609 -18.24480 -17.99812 -17.33344 -16.65886 -16.33126 -15.91753 -15.69067 -15.61268 -15.14584 -14.98797 -14.94315 -14.36372 -14.02139 -13.85587 -13.77742 -13.63857 -13.51085 -13.35195 -13.14116 -13.05874 -12.85440 -12.77645 -12.58854 -12.41085 -12.14571 -12.05946 -11.88407 -11.51093 -11.32643 -11.06319 -10.70989 -10.59016 -10.41645 -9.92644 -9.71751 -9.29996 -9.24244 -9.06062 -8.58559 -6.99918 -6.35134 -4.07898 1.77751 1.93231 2.26100 2.51941 2.63916 2.79456 3.13807 3.27303 3.28292 3.36141 3.45405 3.52416 3.71847 3.82594 4.00147 4.18815 4.22647 4.26348 4.27251 4.51932 4.58824 4.67177 4.86995 4.93161 4.99036 5.04018 5.06590 5.12013 5.15055 5.22118 5.32947 5.34654 5.40914 5.53374 5.58058 5.63965 5.88293 6.20956 6.76000 7.01319 7.02703 7.32033 7.45206 7.87613 8.28602 8.34676 9.10943 10.73927 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.001768 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.399927 B =15836.676731 C =16141.555564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 H 0.133 0.867 4 C 0.217 3.783 5 N -0.408 5.408 6 C 0.541 3.459 7 O -0.522 6.522 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.159 4.159 11 C 0.109 3.891 12 O -0.539 6.539 13 C 0.104 3.896 14 N -0.738 5.738 15 C 0.533 3.467 16 O -0.513 6.513 17 C -0.125 4.125 18 S -0.140 6.140 19 C -0.523 4.523 20 H 0.089 0.911 21 C 0.097 3.903 22 N -0.879 5.879 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.123 3.877 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.380 0.620 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.395 0.605 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.271 0.729 42 H 0.096 0.904 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -3.094 -25.425 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.151 0.849 4 C -0.102 4.102 5 N -0.083 5.083 6 C 0.327 3.673 7 O -0.397 6.397 8 N -0.344 5.344 9 C -0.024 4.024 10 C -0.197 4.197 11 C 0.067 3.933 12 O -0.346 6.346 13 C -0.021 4.021 14 N -0.394 5.394 15 C 0.319 3.681 16 O -0.387 6.387 17 C -0.275 4.275 18 S 0.086 5.914 19 C -0.671 4.671 20 H 0.107 0.893 21 C -0.112 4.112 22 N -0.515 5.515 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C 0.000 4.000 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.229 0.771 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.154 -6.096 -26.920 28.279 hybrid contribution -1.096 1.709 1.072 2.297 sum -7.250 -4.386 -25.847 27.201 Atomic orbital electron populations 1.21753 0.88922 1.04743 1.04478 1.18783 0.99337 0.99645 0.85273 0.84899 1.28115 0.94026 0.93971 0.94088 1.81232 1.07704 1.07694 1.11682 1.19589 0.77786 0.87013 0.82914 1.90808 1.52330 1.13678 1.82849 1.48255 1.62496 1.09505 1.14155 1.22145 1.01968 0.80505 0.97753 1.23390 1.04120 0.97651 0.94561 1.22496 0.83626 0.94491 0.92694 1.86611 1.28390 1.60791 1.58790 1.21771 0.97719 0.95111 0.87487 1.45840 1.30320 1.44244 1.18992 1.20300 0.83088 0.82973 0.81706 1.90726 1.24897 1.45038 1.77994 1.23277 1.05074 1.00809 0.98381 1.84848 1.35744 1.56347 1.14476 1.22298 1.14976 1.25058 1.04757 0.89347 1.24708 0.97314 0.94147 0.95072 1.69934 1.39791 1.31318 1.10481 0.86743 0.83476 0.82701 0.78978 1.19195 1.19883 1.15935 1.22141 0.98482 0.98366 0.80982 0.90657 0.89771 0.90007 0.90465 0.90283 0.88796 0.88727 0.77122 0.90067 0.90007 0.77045 0.88407 0.88326 0.91881 0.88530 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.38 9.13 37.16 0.34 -0.04 16 2 C -0.01 -0.03 2.72 -94.56 -0.26 -0.28 16 3 H 0.13 0.10 6.99 -51.93 -0.36 -0.26 16 4 C 0.22 1.81 14.13 -20.76 -0.29 1.52 16 5 N -0.41 -4.68 18.54 42.15 0.78 -3.89 16 6 C 0.54 4.20 6.83 -10.98 -0.08 4.13 16 7 O -0.52 -6.54 16.65 5.56 0.09 -6.44 16 8 N -0.61 -3.59 3.33 -170.52 -0.57 -4.16 16 9 C 0.10 0.26 6.16 -3.06 -0.02 0.24 16 10 C -0.16 -0.49 5.93 -24.89 -0.15 -0.64 16 11 C 0.11 0.60 0.97 -88.47 -0.09 0.51 16 12 O -0.54 -3.40 13.20 -35.23 -0.47 -3.87 16 13 C 0.10 0.83 4.88 -4.04 -0.02 0.81 16 14 N -0.74 -6.71 5.20 -60.30 -0.31 -7.02 16 15 C 0.53 8.05 7.85 -10.98 -0.09 7.96 16 16 O -0.51 -9.98 15.86 5.56 0.09 -9.89 16 17 C -0.12 -2.13 6.16 36.01 0.22 -1.90 16 18 S -0.14 -3.36 18.55 -107.50 -1.99 -5.35 16 19 C -0.52 -14.42 10.04 30.94 0.31 -14.11 16 20 H 0.09 2.53 8.03 -52.48 -0.42 2.11 16 21 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 22 N -0.88 -25.72 13.97 55.49 0.78 -24.95 16 23 Si 0.86 21.10 27.74 -169.99 -4.71 16.39 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.24 -5.79 6.74 56.52 0.38 -5.41 16 27 C 0.12 0.83 6.13 -2.53 -0.02 0.82 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.12 8.12 -51.92 -0.42 -0.31 16 30 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.08 0.06 7.73 -51.93 -0.40 -0.34 16 32 H 0.08 0.10 8.12 -51.93 -0.42 -0.32 16 33 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.09 0.29 7.99 -51.93 -0.41 -0.12 16 35 H 0.38 1.35 7.69 45.56 0.35 1.70 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.40 2.23 7.28 -40.82 -0.30 1.93 16 39 H 0.10 1.51 8.14 -51.92 -0.42 1.09 16 40 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 41 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.10 0.85 7.99 -51.93 -0.41 0.43 16 43 H 0.09 0.54 8.04 -51.92 -0.42 0.13 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -39.16 383.65 -6.09 -45.26 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -5.34 Total: -3.48 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.22 Total: 1.64 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.68 Total: -40.02 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.28 Total: -20.21 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.16 -6.09 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722271465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.964 kcal (2) G-P(sol) polarization free energy of solvation -39.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds