Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36219 * 116.99871 * 2 1 4 4 C 1.34080 * 122.49479 * 359.97438 * 3 2 1 5 5 S 1.70607 * 110.96923 * 179.78183 * 4 3 2 6 6 C 1.75814 * 91.62141 * 0.30717 * 5 4 3 7 7 C 1.46548 * 125.42552 * 179.97438 * 6 5 4 8 8 O 1.21711 * 119.99564 * 179.69017 * 7 6 5 9 9 N 1.34774 * 120.00237 * 359.68967 * 7 6 5 10 10 C 1.46495 * 120.00080 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46996 * 35.00503 * 10 9 7 12 12 C 1.52994 * 109.47359 * 275.00294 * 10 9 7 13 13 C 1.53006 * 109.46914 * 154.99872 * 10 9 7 14 14 N 1.46898 * 109.47138 * 305.00206 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47138 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47229 * 119.99992 * 23 21 19 26 26 H 1.48497 * 109.47429 * 239.99972 * 23 21 19 27 27 C 1.36736 * 109.14670 * 359.69494 * 6 5 4 28 28 H 1.08994 * 109.46876 * 299.99881 * 1 2 3 29 29 H 1.08997 * 109.47034 * 60.00013 * 1 2 3 30 30 H 1.08996 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.08000 * 124.52013 * 0.02562 * 4 3 2 32 32 H 0.97006 * 119.99482 * 0.02562 * 9 7 6 33 33 H 1.08990 * 109.47506 * 59.99735 * 12 10 9 34 34 H 1.09002 * 109.47542 * 180.02562 * 12 10 9 35 35 H 1.09006 * 109.46971 * 299.99615 * 12 10 9 36 36 H 1.08997 * 109.46770 * 185.00153 * 13 10 9 37 37 H 1.08995 * 109.47019 * 65.00366 * 13 10 9 38 38 H 1.00904 * 110.99913 * 303.95145 * 14 13 10 39 39 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 40 40 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 41 41 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 42 42 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 43 43 H 1.07999 * 123.37521 * 180.22720 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3668 2.3689 -0.0005 5 16 2.4294 3.7037 0.0057 6 6 3.8353 2.6480 -0.0004 7 6 5.2316 3.0929 0.0006 8 8 6.1314 2.2732 0.0018 9 7 5.5194 4.4095 0.0003 10 6 6.9153 4.8542 0.0019 11 1 7.5177 4.1621 -0.5865 12 6 7.4376 4.8899 1.4395 13 6 7.0051 6.2544 -0.6085 14 7 6.3944 6.2463 -1.9445 15 6 6.4631 7.5771 -2.5627 16 6 5.8289 7.5296 -3.9290 17 8 5.3649 6.4896 -4.3463 18 7 5.7774 8.6429 -4.6870 19 6 5.2000 8.5998 -5.9297 20 1 4.7868 7.6737 -6.3013 21 6 5.1463 9.7475 -6.7110 22 7 5.6486 10.8744 -6.2586 23 14 4.3603 9.6887 -8.4045 24 1 3.8736 8.3123 -8.6769 25 1 3.2175 10.6358 -8.4530 26 1 5.3640 10.0712 -9.4298 27 6 3.4183 1.3458 0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2894 2.4445 -0.0006 32 1 4.8022 5.0627 -0.0002 33 1 7.3735 3.8926 1.8742 34 1 8.4760 5.2212 1.4407 35 1 6.8351 5.5821 2.0278 36 1 8.0514 6.5491 -0.6890 37 1 6.4760 6.9630 0.0286 38 1 6.8256 5.5509 -2.5349 39 1 5.9305 8.2953 -1.9393 40 1 7.5057 7.8806 -2.6569 41 1 6.1481 9.4746 -4.3530 42 1 5.6115 11.6756 -6.8042 43 1 4.0961 0.5049 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732966758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = -74.006200 kcal Electronic energy + Delta-G solvation = -26340.403758 eV Core-core repulsion = 22319.893121 eV Total energy + Delta-G solvation = -4020.510637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23312 -39.63880 -38.31898 -36.82447 -35.86020 -34.31429 -33.67498 -31.47710 -31.18159 -29.33054 -28.16339 -27.61694 -25.17979 -24.64291 -23.24514 -21.97853 -20.83400 -19.71863 -19.22622 -18.87171 -17.90338 -17.33730 -16.72595 -16.34894 -16.09301 -15.81568 -15.22410 -15.11098 -14.74583 -14.57509 -14.41133 -14.16511 -13.94350 -13.55080 -13.35003 -13.19624 -13.06262 -12.93915 -12.59697 -12.47843 -12.02379 -11.95993 -11.82017 -11.55971 -11.49927 -11.24214 -11.16237 -11.06948 -10.96299 -10.35334 -10.23741 -10.12756 -9.53279 -9.23367 -9.02242 -8.50010 -8.22831 -8.12563 -7.97522 -6.43267 -3.83928 0.29106 1.25916 1.68868 2.21637 2.84612 3.13376 3.15294 3.26063 3.27658 3.33470 3.89154 4.03747 4.27030 4.60570 4.70898 4.72219 4.85096 4.85747 5.03021 5.03894 5.08779 5.16262 5.21539 5.26905 5.42999 5.46467 5.54241 5.56115 5.71498 5.75823 5.83070 5.90762 5.93548 6.03266 6.23636 6.40085 6.95088 7.11801 7.42920 7.54217 7.57236 8.05124 8.11022 8.59754 9.16790 9.52869 10.04264 10.74535 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.002505 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.916658 B =11174.755024 C =13255.186927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.101 3.899 4 C -0.344 4.344 5 S 0.244 5.756 6 C -0.236 4.236 7 C 0.594 3.406 8 O -0.533 6.533 9 N -0.701 5.701 10 C 0.146 3.854 11 H 0.090 0.910 12 C -0.162 4.162 13 C 0.047 3.953 14 N -0.668 5.668 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.581 6.581 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.072 4.072 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.171 0.829 32 H 0.404 0.596 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.352 0.648 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.075 -12.107 18.446 22.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.044 3.956 4 C -0.482 4.482 5 S 0.511 5.489 6 C -0.357 4.357 7 C 0.380 3.620 8 O -0.412 6.412 9 N -0.352 5.352 10 C 0.041 3.959 11 H 0.108 0.892 12 C -0.221 4.221 13 C -0.083 4.083 14 N -0.301 5.301 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.465 6.465 18 N -0.201 5.201 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.107 4.107 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.188 0.812 32 H 0.239 0.761 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.171 0.829 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.518 -11.701 18.298 22.409 hybrid contribution 0.126 -0.386 -0.989 1.069 sum -5.392 -12.087 17.309 21.790 Atomic orbital electron populations 1.23039 0.78258 1.03952 1.01323 1.86113 1.21236 1.25193 1.89527 1.17536 0.91546 0.84728 1.01782 1.25106 1.05875 0.97662 1.19540 1.83082 0.92505 1.05883 1.67462 1.24449 0.97945 0.97537 1.15753 1.16786 0.86155 0.82765 0.76343 1.90823 1.46728 1.53120 1.50511 1.45666 1.09034 1.06177 1.74287 1.21007 0.82303 0.95783 0.96776 0.89183 1.22150 1.01326 1.02762 0.95834 1.22328 0.98243 0.95855 0.91905 1.60079 1.60535 1.06451 1.03017 1.21683 0.99265 0.91512 0.95758 1.19804 0.85817 0.85128 0.86712 1.90539 1.51542 1.30744 1.73677 1.41870 1.52476 1.09951 1.15811 1.19748 1.34012 0.97438 0.91536 0.87886 1.25261 0.97744 0.94796 1.00196 1.69621 1.45879 1.00362 1.38493 0.85807 0.78600 0.78561 0.81431 1.19202 1.20748 1.20769 1.19905 0.92821 0.96899 1.01052 0.92805 0.92647 0.88158 0.81201 0.76129 0.91741 0.91374 0.92205 0.93602 0.90349 0.82868 0.89558 0.93784 0.77485 0.91936 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.93 101.05 1.00 1.20 16 2 O -0.31 -3.29 10.56 -20.44 -0.22 -3.51 16 3 C 0.10 1.15 6.61 -41.23 -0.27 0.88 16 4 C -0.34 -3.43 9.81 29.27 0.29 -3.14 16 5 S 0.24 2.51 22.15 -107.50 -2.38 0.13 16 6 C -0.24 -2.98 6.45 -36.78 -0.24 -3.21 16 7 C 0.59 8.30 7.75 -12.91 -0.10 8.20 16 8 O -0.53 -8.93 16.50 5.18 0.09 -8.84 16 9 N -0.70 -8.40 4.80 -55.16 -0.26 -8.66 16 10 C 0.15 1.61 2.81 -67.93 -0.19 1.42 16 11 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 12 C -0.16 -1.45 9.48 37.15 0.35 -1.09 16 13 C 0.05 0.51 5.24 -3.82 -0.02 0.49 16 14 N -0.67 -10.04 5.85 -115.05 -0.67 -10.71 16 15 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 16 C 0.44 10.14 7.82 -10.99 -0.09 10.06 16 17 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 18 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 20 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.34 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C -0.07 -0.90 10.00 -40.31 -0.40 -1.30 16 28 H 0.05 0.29 7.84 -51.93 -0.41 -0.12 16 29 H 0.05 0.33 7.84 -51.93 -0.41 -0.07 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.17 1.29 6.96 -52.49 -0.37 0.92 16 32 H 0.40 4.47 7.71 -40.82 -0.31 4.15 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.16 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -33.62 385.03 -7.71 -41.33 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.86 Total: 15.36 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.06 Total: 6.39 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.27 Total: -57.11 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.04 Total: -27.84 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.38 Total: 0.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.62 -7.71 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732966758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.674 kcal (2) G-P(sol) polarization free energy of solvation -33.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds