Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36219 * 116.99871 * 2 1 4 4 C 1.34080 * 122.49479 * 359.97438 * 3 2 1 5 5 S 1.70607 * 110.96923 * 179.78183 * 4 3 2 6 6 C 1.75814 * 91.62141 * 0.30717 * 5 4 3 7 7 C 1.46548 * 125.42552 * 179.97438 * 6 5 4 8 8 O 1.21711 * 119.99564 * 179.69017 * 7 6 5 9 9 N 1.34774 * 120.00237 * 359.68967 * 7 6 5 10 10 C 1.46495 * 120.00080 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46996 * 35.00503 * 10 9 7 12 12 C 1.52994 * 109.47359 * 275.00294 * 10 9 7 13 13 C 1.53006 * 109.46914 * 154.99872 * 10 9 7 14 14 N 1.46898 * 109.47138 * 305.00206 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00058 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00409 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47138 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47229 * 119.99992 * 23 21 19 26 26 H 1.48497 * 109.47429 * 239.99972 * 23 21 19 27 27 C 1.36736 * 109.14670 * 359.69494 * 6 5 4 28 28 H 1.08994 * 109.46876 * 299.99881 * 1 2 3 29 29 H 1.08997 * 109.47034 * 60.00013 * 1 2 3 30 30 H 1.08996 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.08000 * 124.52013 * 0.02562 * 4 3 2 32 32 H 0.97006 * 119.99482 * 0.02562 * 9 7 6 33 33 H 1.08990 * 109.47506 * 59.99735 * 12 10 9 34 34 H 1.09002 * 109.47542 * 180.02562 * 12 10 9 35 35 H 1.09006 * 109.46971 * 299.99615 * 12 10 9 36 36 H 1.08997 * 109.46770 * 185.00153 * 13 10 9 37 37 H 1.08995 * 109.47019 * 65.00366 * 13 10 9 38 38 H 1.00904 * 110.99913 * 303.95145 * 14 13 10 39 39 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 40 40 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 41 41 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 42 42 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 43 43 H 1.07999 * 123.37521 * 180.22720 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3668 2.3689 -0.0005 5 16 2.4294 3.7037 0.0057 6 6 3.8353 2.6480 -0.0004 7 6 5.2316 3.0929 0.0006 8 8 6.1314 2.2732 0.0018 9 7 5.5194 4.4095 0.0003 10 6 6.9153 4.8542 0.0019 11 1 7.5177 4.1621 -0.5865 12 6 7.4376 4.8899 1.4395 13 6 7.0051 6.2544 -0.6085 14 7 6.3944 6.2463 -1.9445 15 6 6.4631 7.5771 -2.5627 16 6 5.8289 7.5296 -3.9290 17 8 5.3649 6.4896 -4.3463 18 7 5.7774 8.6429 -4.6870 19 6 5.2000 8.5998 -5.9297 20 1 4.7868 7.6737 -6.3013 21 6 5.1463 9.7475 -6.7110 22 7 5.6486 10.8744 -6.2586 23 14 4.3603 9.6887 -8.4045 24 1 3.8736 8.3123 -8.6769 25 1 3.2175 10.6358 -8.4530 26 1 5.3640 10.0712 -9.4298 27 6 3.4183 1.3458 0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2894 2.4445 -0.0006 32 1 4.8022 5.0627 -0.0002 33 1 7.3735 3.8926 1.8742 34 1 8.4760 5.2212 1.4407 35 1 6.8351 5.5821 2.0278 36 1 8.0514 6.5491 -0.6890 37 1 6.4760 6.9630 0.0286 38 1 6.8256 5.5509 -2.5349 39 1 5.9305 8.2953 -1.9393 40 1 7.5057 7.8806 -2.6569 41 1 6.1481 9.4746 -4.3530 42 1 5.6115 11.6756 -6.8042 43 1 4.0961 0.5049 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732966758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = -100.630907 kcal Electronic energy + Delta-G solvation = -26341.558292 eV Core-core repulsion = 22319.893121 eV Total energy + Delta-G solvation = -4021.665171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.14743 -40.55356 -40.08798 -37.90562 -36.75687 -36.01570 -35.14311 -33.24607 -32.39725 -30.20492 -28.94211 -28.75417 -26.71392 -25.66161 -24.52323 -22.85685 -21.80716 -21.04168 -20.57330 -19.88897 -19.77346 -18.13663 -17.97740 -17.44919 -17.13049 -16.80577 -16.56788 -16.36468 -16.17539 -15.87597 -15.52519 -15.31525 -15.21753 -14.98319 -14.57216 -14.13064 -14.01852 -13.85624 -13.69274 -13.53266 -13.33298 -13.06835 -12.98062 -12.78687 -12.70437 -12.59768 -12.39213 -12.11781 -12.03266 -11.92153 -11.83565 -11.50045 -11.22927 -10.34653 -10.20770 -9.99458 -9.91154 -9.33523 -9.04114 -8.45850 -5.93876 -0.62535 0.39534 0.83477 1.31305 1.36793 1.42328 1.56070 1.96322 2.08188 2.12882 2.29711 2.50971 2.91697 3.21986 3.53427 3.74089 3.83363 3.96620 4.10038 4.17281 4.34368 4.38222 4.39434 4.39954 4.54796 4.57602 4.61910 4.67072 4.73333 4.77038 4.79750 4.82360 4.99960 5.07120 5.29601 5.42433 5.46490 5.88574 6.10718 6.23424 6.32581 6.44426 6.62178 7.09434 7.14814 7.58981 8.14806 8.71700 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.002505 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.916658 B =11174.755024 C =13255.186927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.326 6.326 3 C 0.087 3.913 4 C -0.334 4.334 5 S 0.280 5.720 6 C -0.263 4.263 7 C 0.589 3.411 8 O -0.572 6.572 9 N -0.694 5.694 10 C 0.144 3.856 11 H 0.068 0.932 12 C -0.153 4.153 13 C 0.053 3.947 14 N -0.681 5.681 15 C 0.066 3.934 16 C 0.437 3.563 17 O -0.624 6.624 18 N -0.574 5.574 19 C -0.331 4.331 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.084 4.084 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.198 0.802 32 H 0.409 0.591 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.340 0.660 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.397 0.603 42 H 0.277 0.723 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 -10.669 19.360 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.030 3.970 4 C -0.472 4.472 5 S 0.547 5.453 6 C -0.384 4.384 7 C 0.376 3.624 8 O -0.454 6.454 9 N -0.344 5.344 10 C 0.040 3.960 11 H 0.087 0.913 12 C -0.212 4.212 13 C -0.076 4.076 14 N -0.313 5.313 15 C -0.066 4.066 16 C 0.224 3.776 17 O -0.510 6.510 18 N -0.212 5.212 19 C -0.460 4.460 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.120 4.120 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.215 0.785 32 H 0.245 0.755 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.158 0.842 39 H 0.130 0.870 40 H 0.086 0.914 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.367 -10.211 19.247 22.699 hybrid contribution 0.340 -0.868 -1.233 1.546 sum -6.027 -11.079 18.014 21.991 Atomic orbital electron populations 1.23344 0.76164 1.05660 1.02274 1.86092 1.23453 1.24977 1.89621 1.17522 0.91216 0.85593 1.02623 1.25450 1.07203 0.96986 1.17577 1.82882 0.90977 1.05075 1.66355 1.24428 0.98277 0.98370 1.17310 1.17033 0.86461 0.83058 0.75848 1.90789 1.47952 1.54095 1.52551 1.45688 1.09770 1.05637 1.73268 1.21099 0.81511 0.95441 0.97971 0.91331 1.22074 1.02682 1.02284 0.94130 1.22406 0.99524 0.95979 0.89677 1.60084 1.61657 1.05276 1.04326 1.21549 1.00097 0.92999 0.91947 1.20971 0.84334 0.83727 0.88527 1.90511 1.53085 1.32188 1.75212 1.41934 1.52930 1.10811 1.15491 1.19657 1.35902 0.97027 0.93438 0.90564 1.25992 0.97781 0.94187 1.03291 1.69671 1.46022 1.00720 1.39681 0.84913 0.78144 0.78209 0.77339 1.19955 1.19538 1.19706 1.19997 0.93701 0.96813 1.01457 0.91392 0.92014 0.86273 0.78518 0.75494 0.93470 0.89526 0.90524 0.91536 0.88161 0.84203 0.87022 0.91414 0.76907 0.91344 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.93 113.37 1.13 1.35 16 2 O -0.33 -6.88 10.56 -96.05 -1.01 -7.89 16 3 C 0.09 1.97 6.61 21.20 0.14 2.11 16 4 C -0.33 -6.16 9.81 66.87 0.66 -5.50 16 5 S 0.28 5.45 22.15 -56.49 -1.25 4.20 16 6 C -0.26 -6.79 6.45 24.09 0.16 -6.63 16 7 C 0.59 17.01 7.75 86.41 0.67 17.68 16 8 O -0.57 -20.23 16.50 -4.38 -0.07 -20.30 16 9 N -0.69 -16.37 4.80 -446.63 -2.14 -18.51 16 10 C 0.14 3.03 2.81 44.99 0.13 3.16 16 11 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 12 C -0.15 -2.47 9.48 71.98 0.68 -1.79 16 13 C 0.05 1.01 5.24 86.31 0.45 1.46 16 14 N -0.68 -19.44 5.85 -517.92 -3.03 -22.47 16 15 C 0.07 2.06 6.17 85.56 0.53 2.58 16 16 C 0.44 20.07 7.82 87.66 0.69 20.76 16 17 O -0.62 -34.07 15.78 -3.06 -0.05 -34.12 16 18 N -0.57 -28.73 5.29 -306.99 -1.62 -30.35 16 19 C -0.33 -18.58 9.68 84.04 0.81 -17.77 16 20 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -48.93 13.05 21.66 0.28 -48.65 16 23 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 C -0.08 -2.18 10.00 21.80 0.22 -1.96 16 28 H 0.07 0.59 7.84 -2.39 -0.02 0.57 16 29 H 0.06 0.63 7.84 -2.39 -0.02 0.61 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.20 2.43 6.96 -2.91 -0.02 2.41 16 32 H 0.41 8.60 7.71 -92.70 -0.71 7.88 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.34 11.14 8.43 -89.69 -0.76 10.38 16 39 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 42 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 43 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -74.83 385.03 -1.28 -76.11 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -1.13 Total: 42.03 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.72 Total: 15.23 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -6.51 Total: -119.98 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -1.14 Total: -62.32 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.25 Total: 4.20 kcal Total: -74.83 -1.28 -76.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732966758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.520 kcal (2) G-P(sol) polarization free energy of solvation -74.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds