Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.46817 * 2 1 4 4 C 1.52999 * 109.46901 * 119.99951 * 2 1 3 5 5 N 1.46502 * 109.47214 * 175.00123 * 4 2 1 6 6 C 1.34775 * 120.00183 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00180 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99816 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47067 * 180.02562 * 8 6 5 10 10 C 1.76203 * 100.00272 * 180.02562 * 9 8 6 11 11 H 1.07993 * 119.99432 * 0.02562 * 10 9 8 12 12 C 1.38794 * 120.00018 * 179.97438 * 10 9 8 13 13 N 1.31626 * 119.99802 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00253 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47323 * 89.99541 * 14 12 10 16 16 H 1.48495 * 109.47304 * 209.99444 * 14 12 10 17 17 H 1.48499 * 109.46919 * 329.99559 * 14 12 10 18 18 N 1.46496 * 109.47113 * 239.99810 * 2 1 3 19 19 C 1.46497 * 120.00352 * 300.00291 * 18 2 1 20 20 C 1.34776 * 119.99846 * 119.99870 * 18 2 1 21 21 O 1.21282 * 119.99940 * 0.02562 * 20 18 2 22 22 C 1.50698 * 120.00035 * 179.97438 * 20 18 2 23 23 C 1.50706 * 109.47294 * 180.02562 * 22 20 18 24 24 C 1.41375 * 126.80033 * 124.99944 * 23 22 20 25 25 C 1.35447 * 103.98606 * 180.02562 * 24 23 22 26 26 O 1.34045 * 106.44853 * 0.02562 * 25 24 23 27 27 N 1.20924 * 111.56028 * 359.70747 * 26 25 24 28 28 H 1.09000 * 109.47114 * 300.00123 * 1 2 3 29 29 H 1.09003 * 109.46701 * 59.99870 * 1 2 3 30 30 H 1.08997 * 109.46817 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47328 * 294.99838 * 4 2 1 32 32 H 1.09003 * 109.47076 * 55.00296 * 4 2 1 33 33 H 0.96998 * 119.99579 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47213 * 300.00401 * 8 6 5 35 35 H 1.09003 * 109.46852 * 60.00652 * 8 6 5 36 36 H 0.97000 * 119.99862 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.46908 * 270.00137 * 19 18 2 38 38 H 1.09000 * 109.47065 * 29.99587 * 19 18 2 39 39 H 1.09002 * 109.47641 * 149.99946 * 19 18 2 40 40 H 1.09001 * 109.46665 * 60.00498 * 22 20 18 41 41 H 1.09000 * 109.47722 * 300.00830 * 22 20 18 42 42 H 1.07997 * 128.00983 * 359.97353 * 24 23 22 43 43 H 1.08005 * 126.78047 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1907 6 6 4.1731 -1.4283 2.1913 7 8 3.5700 -1.8833 3.1400 8 6 5.6750 -1.5369 2.1307 9 16 6.2783 -2.3900 3.6086 10 6 8.0101 -2.3771 3.2839 11 1 8.3863 -1.9239 2.3787 12 6 8.8907 -2.9483 4.1919 13 7 10.1844 -2.9391 3.9491 14 14 8.2400 -3.7315 5.7580 15 1 7.9530 -5.1675 5.5111 16 1 9.2569 -3.6078 6.8329 17 1 6.9926 -3.0420 6.1748 18 7 2.0184 -0.6906 -1.1961 19 6 1.6645 -2.0932 -1.4280 20 6 2.7932 -0.0356 -2.0833 21 8 3.0866 1.1254 -1.8911 22 6 3.2961 -0.7462 -3.3134 23 6 4.1337 0.2009 -4.1336 24 6 5.4635 -0.0036 -4.5676 25 6 5.7591 1.1230 -5.2590 26 8 4.6658 1.8969 -5.2089 27 7 3.7747 1.3674 -4.5862 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 3.9825 -0.4621 0.4320 34 1 5.9630 -2.1004 1.2432 35 1 6.1098 -0.5384 2.0841 36 1 10.7998 -3.3387 4.5835 37 1 2.4158 -2.7377 -0.9716 38 1 0.6905 -2.3002 -0.9846 39 1 1.6239 -2.2852 -2.5002 40 1 2.4485 -1.0891 -3.9068 41 1 3.9017 -1.6024 -3.0165 42 1 6.0974 -0.8595 -4.3887 43 1 6.6919 1.3530 -5.7525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734746196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = -5.219915 kcal Electronic energy + Delta-G solvation = -27034.816194 eV Core-core repulsion = 23017.288354 eV Total energy + Delta-G solvation = -4017.527840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.15698 -40.59959 -39.15506 -36.98207 -34.93916 -34.23419 -32.45568 -32.34941 -31.87930 -29.68750 -29.32944 -27.35588 -26.02950 -25.53556 -23.43733 -22.91852 -21.12181 -20.45136 -19.42871 -18.10667 -17.96010 -17.86764 -17.37913 -16.69061 -16.48707 -16.09792 -15.71759 -15.36917 -14.98365 -14.94964 -14.16066 -13.94799 -13.94236 -13.66489 -13.48986 -13.43579 -13.13154 -12.97771 -12.81541 -12.79659 -12.60333 -12.56638 -12.22375 -11.89588 -11.54454 -11.29066 -11.26545 -11.02046 -10.61982 -10.52436 -10.05348 -9.87250 -9.85022 -9.56594 -9.09215 -9.03682 -8.98109 -8.51620 -6.93085 -6.30016 -4.01814 1.30156 1.89867 2.25232 2.55425 2.76219 2.95660 3.04788 3.29781 3.33093 3.49508 3.64727 3.76427 4.04946 4.30510 4.32014 4.45729 4.63378 4.67604 4.76268 4.77628 4.86123 4.87133 4.94525 5.07571 5.09045 5.18227 5.23019 5.23836 5.27745 5.38197 5.41757 5.53766 5.66168 5.71220 5.74676 5.79591 6.00303 6.11201 6.49762 6.92024 7.57692 7.78852 7.93146 8.04977 8.40718 8.46418 9.16136 10.79287 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.002801 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.154599 B = 9994.641648 C =12063.368158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.109 0.891 4 C 0.113 3.887 5 N -0.733 5.733 6 C 0.531 3.469 7 O -0.520 6.520 8 C -0.124 4.124 9 S -0.140 6.140 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.611 5.611 19 C 0.071 3.929 20 C 0.515 3.485 21 O -0.521 6.521 22 C -0.060 4.060 23 C 0.020 3.980 24 C -0.227 4.227 25 C -0.061 4.061 26 O 0.103 5.897 27 N -0.339 5.339 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.398 0.602 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.119 0.881 42 H 0.174 0.826 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.311 3.897 -19.954 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.020 3.980 3 H 0.127 0.873 4 C -0.012 4.012 5 N -0.387 5.387 6 C 0.317 3.683 7 O -0.395 6.395 8 C -0.274 4.274 9 S 0.086 5.914 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.346 5.346 19 C -0.072 4.072 20 C 0.302 3.698 21 O -0.396 6.396 22 C -0.101 4.101 23 C -0.139 4.139 24 C -0.249 4.249 25 C -0.142 4.142 26 O 0.034 5.966 27 N -0.040 5.040 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.233 0.767 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.191 0.809 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -19.124 4.432 -18.113 26.711 hybrid contribution 1.732 -0.511 -0.742 1.952 sum -17.393 3.921 -18.855 25.950 Atomic orbital electron populations 1.22058 0.93554 1.02832 1.03172 1.21397 0.94954 0.98429 0.83175 0.87308 1.21661 0.81105 1.01178 0.97254 1.45889 1.06935 1.61534 1.24356 1.20267 0.89421 0.76896 0.81724 1.90696 1.69861 1.46395 1.32535 1.23271 0.93462 1.05501 1.05205 1.84759 1.06909 1.75258 1.24490 1.22317 0.88681 1.44675 1.11240 0.89424 1.24710 0.94093 0.94531 0.97952 1.69937 1.01560 1.43493 1.36711 0.86733 0.80831 0.81185 0.83097 1.19210 1.19929 1.15910 1.47882 1.51189 1.12797 1.22744 1.21889 1.02034 0.81170 1.02134 1.20388 0.78237 0.87011 0.84138 1.90778 1.56614 1.16395 1.75800 1.20026 0.99894 0.96808 0.93333 1.22852 0.94659 0.94178 1.02223 1.22736 0.96194 1.01960 1.03964 1.26029 0.94214 0.91234 1.02726 1.84870 1.17565 1.40346 1.53852 1.73873 1.11883 1.09362 1.08855 0.90722 0.91688 0.91778 0.90380 0.91169 0.76750 0.88697 0.88541 0.91934 0.91757 0.90409 0.90837 0.86965 0.86326 0.80898 0.76657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.17 37.16 0.34 -0.69 16 2 C 0.12 1.09 2.80 -67.93 -0.19 0.90 16 3 H 0.11 1.18 6.90 -51.93 -0.36 0.83 16 4 C 0.11 1.22 4.97 -4.04 -0.02 1.20 16 5 N -0.73 -9.75 5.39 -60.29 -0.32 -10.07 16 6 C 0.53 9.50 7.85 -10.99 -0.09 9.41 16 7 O -0.52 -11.11 15.86 5.56 0.09 -11.02 16 8 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 11 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 12 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 13 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 14 Si 0.86 21.75 27.74 -169.99 -4.72 17.04 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 18 N -0.61 -4.96 2.24 -173.94 -0.39 -5.35 16 19 C 0.07 0.37 9.40 59.85 0.56 0.93 16 20 C 0.52 5.29 7.37 -10.99 -0.08 5.21 16 21 O -0.52 -7.61 14.93 5.56 0.08 -7.53 16 22 C -0.06 -0.45 4.85 -29.03 -0.14 -0.59 16 23 C 0.02 0.21 6.10 -82.10 -0.50 -0.29 16 24 C -0.23 -1.81 11.12 -39.39 -0.44 -2.24 16 25 C -0.06 -0.44 12.30 29.74 0.37 -0.07 16 26 O 0.10 1.09 11.20 17.16 0.19 1.28 16 27 N -0.34 -4.19 11.48 33.42 0.38 -3.81 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.35 6.66 -51.93 -0.35 0.00 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 33 H 0.40 4.95 7.87 -40.82 -0.32 4.63 16 34 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 35 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 36 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.34 6.43 -51.93 -0.33 0.00 16 39 H 0.07 0.23 6.44 -51.93 -0.33 -0.10 16 40 H 0.11 0.59 7.40 -51.93 -0.38 0.21 16 41 H 0.12 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.22 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -38.52 378.87 -5.81 -44.33 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.86 Total: 1.26 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 0.25 Total: -0.49 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.44 Total: -45.01 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: 0.36 Total: -17.27 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.52 -5.81 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734746196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.110 kcal (2) G-P(sol) polarization free energy of solvation -38.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds