Wall clock time and date at job start Sat Apr 11 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.46817 * 2 1 4 4 C 1.52999 * 109.46901 * 119.99951 * 2 1 3 5 5 N 1.46502 * 109.47214 * 175.00123 * 4 2 1 6 6 C 1.34775 * 120.00183 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00180 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99816 * 179.97438 * 6 5 4 9 9 S 1.80997 * 109.47067 * 180.02562 * 8 6 5 10 10 C 1.76203 * 100.00272 * 180.02562 * 9 8 6 11 11 H 1.07993 * 119.99432 * 0.02562 * 10 9 8 12 12 C 1.38794 * 120.00018 * 179.97438 * 10 9 8 13 13 N 1.31626 * 119.99802 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00253 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47323 * 89.99541 * 14 12 10 16 16 H 1.48495 * 109.47304 * 209.99444 * 14 12 10 17 17 H 1.48499 * 109.46919 * 329.99559 * 14 12 10 18 18 N 1.46496 * 109.47113 * 239.99810 * 2 1 3 19 19 C 1.46497 * 120.00352 * 300.00291 * 18 2 1 20 20 C 1.34776 * 119.99846 * 119.99870 * 18 2 1 21 21 O 1.21282 * 119.99940 * 0.02562 * 20 18 2 22 22 C 1.50698 * 120.00035 * 179.97438 * 20 18 2 23 23 C 1.50706 * 109.47294 * 180.02562 * 22 20 18 24 24 C 1.41375 * 126.80033 * 124.99944 * 23 22 20 25 25 C 1.35447 * 103.98606 * 180.02562 * 24 23 22 26 26 O 1.34045 * 106.44853 * 0.02562 * 25 24 23 27 27 N 1.20924 * 111.56028 * 359.70747 * 26 25 24 28 28 H 1.09000 * 109.47114 * 300.00123 * 1 2 3 29 29 H 1.09003 * 109.46701 * 59.99870 * 1 2 3 30 30 H 1.08997 * 109.46817 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47328 * 294.99838 * 4 2 1 32 32 H 1.09003 * 109.47076 * 55.00296 * 4 2 1 33 33 H 0.96998 * 119.99579 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.47213 * 300.00401 * 8 6 5 35 35 H 1.09003 * 109.46852 * 60.00652 * 8 6 5 36 36 H 0.97000 * 119.99862 * 180.02562 * 13 12 10 37 37 H 1.08999 * 109.46908 * 270.00137 * 19 18 2 38 38 H 1.09000 * 109.47065 * 29.99587 * 19 18 2 39 39 H 1.09002 * 109.47641 * 149.99946 * 19 18 2 40 40 H 1.09001 * 109.46665 * 60.00498 * 22 20 18 41 41 H 1.09000 * 109.47722 * 300.00830 * 22 20 18 42 42 H 1.07997 * 128.00983 * 359.97353 * 24 23 22 43 43 H 1.08005 * 126.78047 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1907 6 6 4.1731 -1.4283 2.1913 7 8 3.5700 -1.8833 3.1400 8 6 5.6750 -1.5369 2.1307 9 16 6.2783 -2.3900 3.6086 10 6 8.0101 -2.3771 3.2839 11 1 8.3863 -1.9239 2.3787 12 6 8.8907 -2.9483 4.1919 13 7 10.1844 -2.9391 3.9491 14 14 8.2400 -3.7315 5.7580 15 1 7.9530 -5.1675 5.5111 16 1 9.2569 -3.6078 6.8329 17 1 6.9926 -3.0420 6.1748 18 7 2.0184 -0.6906 -1.1961 19 6 1.6645 -2.0932 -1.4280 20 6 2.7932 -0.0356 -2.0833 21 8 3.0866 1.1254 -1.8911 22 6 3.2961 -0.7462 -3.3134 23 6 4.1337 0.2009 -4.1336 24 6 5.4635 -0.0036 -4.5676 25 6 5.7591 1.1230 -5.2590 26 8 4.6658 1.8969 -5.2089 27 7 3.7747 1.3674 -4.5862 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2951 33 1 3.9825 -0.4621 0.4320 34 1 5.9630 -2.1004 1.2432 35 1 6.1098 -0.5384 2.0841 36 1 10.7998 -3.3387 4.5835 37 1 2.4158 -2.7377 -0.9716 38 1 0.6905 -2.3002 -0.9846 39 1 1.6239 -2.2852 -2.5002 40 1 2.4485 -1.0891 -3.9068 41 1 3.9017 -1.6024 -3.0165 42 1 6.0974 -0.8595 -4.3887 43 1 6.6919 1.3530 -5.7525 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734746196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:04 Heat of formation + Delta-G solvation = -33.376954 kcal Electronic energy + Delta-G solvation = -27036.037175 eV Core-core repulsion = 23017.288354 eV Total energy + Delta-G solvation = -4018.748821 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.83922 -41.42454 -40.46408 -37.85221 -35.63488 -35.30634 -34.68354 -33.18113 -32.54406 -31.04148 -30.03386 -27.91446 -27.86488 -26.85120 -24.10408 -23.62933 -21.85632 -21.76663 -20.21762 -19.79090 -18.78522 -18.61560 -18.10444 -17.95537 -17.63271 -17.11635 -16.94984 -16.64420 -16.51734 -15.79416 -15.70789 -15.02816 -14.83967 -14.80691 -14.57594 -14.29238 -14.10216 -14.01749 -13.77726 -13.49238 -13.37796 -13.35096 -13.13484 -13.03418 -12.98452 -12.90522 -12.61024 -12.21728 -11.97580 -11.87386 -11.23882 -11.17818 -11.08190 -10.78819 -10.56855 -10.50260 -10.21071 -9.77976 -9.01433 -8.52463 -6.23860 0.68859 0.96325 1.26886 1.31052 1.45786 1.50510 1.51649 1.54566 1.91435 2.20046 2.25347 2.52122 2.69278 2.85795 3.17239 3.45659 3.63038 3.74604 3.82768 4.02720 4.15113 4.18937 4.20160 4.25218 4.38133 4.40805 4.44153 4.55759 4.60284 4.63691 4.72203 4.76750 4.87008 4.94916 5.00178 5.19223 5.21768 5.32158 5.49875 5.69594 6.10161 6.25791 6.32506 6.92370 7.06886 7.09101 7.40918 8.60111 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010917 B = 0.002801 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.154599 B = 9994.641648 C =12063.368158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.130 3.870 3 H 0.085 0.915 4 C 0.114 3.886 5 N -0.712 5.712 6 C 0.538 3.462 7 O -0.556 6.556 8 C -0.113 4.113 9 S -0.166 6.166 10 C -0.532 4.532 11 H 0.060 0.940 12 C 0.046 3.954 13 N -0.917 5.917 14 Si 0.915 3.085 15 H -0.259 1.259 16 H -0.260 1.260 17 H -0.237 1.237 18 N -0.606 5.606 19 C 0.063 3.937 20 C 0.510 3.490 21 O -0.573 6.573 22 C -0.058 4.058 23 C 0.007 3.993 24 C -0.239 4.239 25 C -0.053 4.053 26 O 0.082 5.918 27 N -0.384 5.384 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.405 0.595 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.277 0.723 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.137 0.863 41 H 0.146 0.854 42 H 0.197 0.803 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.614 2.555 -20.598 27.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.026 3.974 3 H 0.103 0.897 4 C -0.010 4.010 5 N -0.364 5.364 6 C 0.323 3.677 7 O -0.434 6.434 8 C -0.264 4.264 9 S 0.060 5.940 10 C -0.679 4.679 11 H 0.078 0.922 12 C -0.159 4.159 13 N -0.555 5.555 14 Si 0.737 3.263 15 H -0.184 1.184 16 H -0.184 1.184 17 H -0.161 1.161 18 N -0.339 5.339 19 C -0.079 4.079 20 C 0.299 3.701 21 O -0.452 6.452 22 C -0.098 4.098 23 C -0.152 4.152 24 C -0.261 4.261 25 C -0.134 4.134 26 O 0.016 5.984 27 N -0.089 5.089 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.240 0.760 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.155 0.845 41 H 0.164 0.836 42 H 0.214 0.786 43 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -20.441 3.089 -18.806 27.948 hybrid contribution 2.119 -0.033 -0.689 2.229 sum -18.322 3.056 -19.495 26.928 Atomic orbital electron populations 1.22012 0.91348 1.04074 1.03426 1.21267 0.96460 0.96952 0.82696 0.89674 1.21850 0.79036 1.01978 0.98185 1.45723 1.08157 1.59509 1.23042 1.19860 0.88469 0.77188 0.82143 1.90688 1.70159 1.48485 1.34116 1.23261 0.95058 1.05280 1.02812 1.84630 1.04420 1.76534 1.28416 1.22460 0.90913 1.44216 1.10328 0.92183 1.25571 0.94320 0.95019 1.01015 1.70016 1.02748 1.44529 1.38179 0.85858 0.80393 0.80456 0.79620 1.18371 1.18393 1.16070 1.47963 1.50253 1.13847 1.21844 1.22156 1.02574 0.78983 1.04161 1.20897 0.77798 0.86519 0.84902 1.90759 1.58681 1.18717 1.77066 1.20198 1.00918 0.96621 0.92035 1.23429 0.95904 0.93954 1.01943 1.23133 0.95721 1.03076 1.04128 1.26862 0.94389 0.90438 1.01711 1.84808 1.18386 1.41115 1.54097 1.73865 1.13388 1.10859 1.10764 0.90099 0.91861 0.89994 0.90758 0.90095 0.75965 0.86904 0.87827 0.91317 0.92019 0.89038 0.88238 0.84532 0.83604 0.78578 0.72741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.17 71.99 0.66 -0.98 16 2 C 0.13 2.11 2.80 45.00 0.13 2.23 16 3 H 0.09 1.85 6.90 -2.39 -0.02 1.83 16 4 C 0.11 2.25 4.97 86.38 0.43 2.68 16 5 N -0.71 -17.82 5.39 -463.06 -2.49 -20.31 16 6 C 0.54 18.52 7.85 87.66 0.69 19.21 16 7 O -0.56 -23.14 15.86 -3.03 -0.05 -23.18 16 8 C -0.11 -4.34 6.16 71.24 0.44 -3.91 16 9 S -0.17 -8.38 18.55 -56.49 -1.05 -9.43 16 10 C -0.53 -30.98 10.04 67.95 0.68 -30.29 16 11 H 0.06 3.71 8.03 -2.91 -0.02 3.68 16 12 C 0.05 2.71 5.50 84.86 0.47 3.17 16 13 N -0.92 -55.68 13.97 21.65 0.30 -55.38 16 14 Si 0.92 44.64 27.74 68.60 1.90 46.54 16 15 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.24 -11.54 6.74 99.48 0.67 -10.87 16 18 N -0.61 -8.63 2.24 -822.60 -1.85 -10.47 16 19 C 0.06 0.46 9.40 127.77 1.20 1.66 16 20 C 0.51 9.90 7.37 87.66 0.65 10.55 16 21 O -0.57 -16.99 14.93 -3.04 -0.05 -17.03 16 22 C -0.06 -0.76 4.85 29.10 0.14 -0.61 16 23 C 0.01 0.13 6.10 43.58 0.27 0.40 16 24 C -0.24 -3.43 11.12 22.40 0.25 -3.19 16 25 C -0.05 -0.70 12.30 67.17 0.83 0.13 16 26 O 0.08 1.74 11.20 71.58 0.80 2.55 16 27 N -0.38 -9.65 11.48 -49.55 -0.57 -10.22 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.62 6.66 -2.39 -0.02 0.60 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.50 7.84 -2.39 -0.02 1.48 16 33 H 0.41 9.46 7.87 -92.71 -0.73 8.73 16 34 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 35 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 36 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 0.45 6.43 -2.39 -0.02 0.44 16 39 H 0.10 0.23 6.44 -2.39 -0.02 0.21 16 40 H 0.14 1.06 7.40 -2.39 -0.02 1.05 16 41 H 0.15 1.03 8.10 -2.39 -0.02 1.01 16 42 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.26 0.77 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -86.00 378.87 4.05 -81.95 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.28 Total: 13.94 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 6.82 Total: 1.05 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -4.61 Total: -96.38 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: 0.71 Total: -37.67 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.90 Total: 46.54 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.05 Total: -9.43 kcal Total: -86.00 4.05 -81.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734746196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.569 kcal (2) G-P(sol) polarization free energy of solvation -86.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds