Wall clock time and date at job start Sat Apr 11 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34773 * 120.00137 * 2 1 4 4 O 1.21553 * 119.99733 * 0.02562 * 3 2 1 5 5 C 1.47843 * 120.00208 * 180.02562 * 3 2 1 6 6 C 1.39592 * 120.14067 * 359.97438 * 5 3 2 7 7 C 1.37943 * 119.84818 * 179.97438 * 6 5 3 8 8 C 1.38374 * 120.14594 * 0.27827 * 7 6 5 9 9 C 1.38337 * 120.29365 * 359.44272 * 8 7 6 10 10 C 1.50703 * 119.92853 * 180.25983 * 9 8 7 11 11 N 1.46496 * 109.47133 * 270.29950 * 10 9 8 12 12 S 1.65593 * 120.00426 * 164.42187 * 11 10 9 13 13 O 1.42103 * 106.40622 * 176.27044 * 12 11 10 14 14 O 1.42101 * 106.40184 * 309.19456 * 12 11 10 15 15 N 1.65605 * 107.21988 * 62.73234 * 12 11 10 16 16 C 1.46504 * 119.99906 * 273.06668 * 15 12 11 17 17 C 1.46495 * 120.00018 * 93.05912 * 15 12 11 18 18 C 1.50707 * 109.46922 * 95.56053 * 17 15 12 19 19 H 1.08003 * 119.99961 * 4.95545 * 18 17 15 20 20 C 1.37871 * 120.00261 * 184.95644 * 18 17 15 21 21 N 1.31514 * 120.00121 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99816 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47591 * 89.99911 * 22 20 18 24 24 H 1.48500 * 109.46896 * 210.00022 * 22 20 18 25 25 H 1.48498 * 109.47049 * 329.99453 * 22 20 18 26 26 C 1.37978 * 120.14308 * 0.55401 * 9 8 7 27 27 H 1.09004 * 109.46947 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46824 * 299.99849 * 1 2 3 29 29 H 1.08996 * 109.47032 * 59.99796 * 1 2 3 30 30 H 0.97003 * 119.99592 * 179.97438 * 2 1 3 31 31 H 1.07998 * 120.08084 * 359.97438 * 6 5 3 32 32 H 1.08010 * 119.92212 * 179.97438 * 7 6 5 33 33 H 1.08004 * 119.85363 * 179.70491 * 8 7 6 34 34 H 1.08998 * 109.46877 * 30.29824 * 10 9 8 35 35 H 1.08996 * 109.47181 * 150.29340 * 10 9 8 36 36 H 0.97008 * 119.99752 * 344.41701 * 11 10 9 37 37 H 1.09009 * 109.47102 * 89.99841 * 16 15 12 38 38 H 1.08994 * 109.47167 * 209.99304 * 16 15 12 39 39 H 1.09003 * 109.46988 * 329.99692 * 16 15 12 40 40 H 1.09004 * 109.47511 * 215.55834 * 17 15 12 41 41 H 1.09004 * 109.47551 * 335.56290 * 17 15 12 42 42 H 0.96997 * 119.99807 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.07290 * 179.74082 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5312 2.2198 0.0005 5 6 3.6174 1.1672 -0.0006 6 6 4.3183 -0.0400 -0.0006 7 6 5.6978 -0.0329 -0.0016 8 6 6.3865 1.1672 0.0031 9 6 5.6980 2.3670 -0.0027 10 6 6.4565 3.6692 -0.0034 11 7 6.7034 4.0912 1.3776 12 16 7.8308 5.2613 1.6968 13 8 7.7715 5.5048 3.0956 14 8 9.0199 4.8664 1.0264 15 7 7.3172 6.6516 0.9581 16 6 7.6680 6.9105 -0.4406 17 6 6.5121 7.6226 1.7031 18 6 7.4104 8.6942 2.2650 19 1 8.4621 8.7009 2.0192 20 6 6.8899 9.6660 3.0929 21 7 7.6739 10.6009 3.5837 22 14 5.0710 9.6540 3.5187 23 1 4.8549 8.8448 4.7449 24 1 4.6090 11.0452 3.7559 25 1 4.3032 9.0626 2.3936 26 6 4.3182 2.3740 -0.0017 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 1.9500 -0.8401 0.0004 31 1 3.7820 -0.9774 0.0003 32 1 6.2413 -0.9663 -0.0012 33 1 7.4666 1.1672 0.0071 34 1 7.4079 3.5351 -0.5180 35 1 5.8700 4.4310 -0.5168 36 1 6.2063 3.6853 2.1050 37 1 6.8973 6.4965 -1.0911 38 1 7.7419 7.9856 -0.6037 39 1 8.6255 6.4417 -0.6678 40 1 5.7796 8.0759 1.0352 41 1 5.9958 7.1167 2.5190 42 1 7.3077 11.2843 4.1664 43 1 3.7818 3.3113 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028321351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:00 Heat of formation + Delta-G solvation = -77.445639 kcal Electronic energy + Delta-G solvation = -27272.367971 eV Core-core repulsion = 23251.708188 eV Total energy + Delta-G solvation = -4020.659783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.58253 -38.91045 -36.69764 -35.67423 -35.41637 -35.22941 -34.99352 -32.36693 -31.66739 -31.24166 -28.38144 -27.45132 -25.86305 -25.14652 -23.69577 -22.18704 -21.89805 -20.65227 -19.09650 -18.42128 -17.30370 -17.00642 -16.64286 -16.58408 -16.36205 -16.06744 -15.59122 -15.30035 -15.08835 -14.67042 -14.18327 -14.06781 -13.76902 -13.61399 -13.38544 -13.21662 -13.01925 -12.76592 -12.65813 -12.51835 -12.32021 -12.07054 -11.76957 -11.74628 -11.50247 -11.31027 -11.23467 -11.21733 -10.65176 -10.44068 -10.33971 -10.24939 -9.63298 -9.55902 -9.45760 -9.31014 -9.25491 -8.56764 -8.12428 -6.06581 -4.06105 0.45305 0.85251 1.21063 2.50001 2.75738 3.29886 3.35202 3.37463 3.39575 3.60325 4.07032 4.22786 4.28308 4.41405 4.47216 4.64863 4.76138 4.91175 4.92066 5.02134 5.08502 5.19715 5.25260 5.27272 5.38272 5.49324 5.55301 5.61765 5.82550 5.87482 5.91068 5.94248 5.97544 6.18727 6.21729 6.45730 6.47790 6.74987 6.97184 7.01791 7.12684 7.42234 7.59951 7.80738 8.50312 8.97676 9.52957 11.06847 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003040 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.236921 B = 9207.268563 C =10772.982961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.734 5.734 3 C 0.557 3.443 4 O -0.531 6.531 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.128 4.128 8 C -0.073 4.073 9 C -0.101 4.101 10 C 0.160 3.840 11 N -1.132 6.132 12 S 2.782 3.218 13 O -0.961 6.961 14 O -0.992 6.992 15 N -0.989 5.989 16 C 0.092 3.908 17 C 0.227 3.773 18 C -0.534 4.534 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.895 5.895 22 Si 0.872 3.128 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.265 1.265 26 C -0.042 4.042 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.401 0.599 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.414 0.586 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.031 0.969 42 H 0.265 0.735 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 -26.238 -11.258 30.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.345 3.655 4 O -0.408 6.408 5 C -0.144 4.144 6 C -0.103 4.103 7 C -0.146 4.146 8 C -0.092 4.092 9 C -0.102 4.102 10 C 0.034 3.966 11 N -0.891 5.891 12 S 2.790 3.210 13 O -0.944 6.944 14 O -0.975 6.975 15 N -0.832 5.832 16 C -0.055 4.055 17 C 0.104 3.896 18 C -0.573 4.573 19 H 0.096 0.904 20 C -0.129 4.129 21 N -0.533 5.533 22 Si 0.699 3.301 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.189 1.189 26 C -0.061 4.061 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.236 0.764 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.247 0.753 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.743 -25.305 -10.798 29.187 hybrid contribution -1.333 -0.475 0.448 1.484 sum -11.076 -25.780 -10.350 29.907 Atomic orbital electron populations 1.21571 0.79082 1.02338 1.02676 1.45704 1.07968 1.08582 1.76390 1.18342 0.87318 0.83751 0.76086 1.90813 1.69892 1.31089 1.48958 1.19859 0.92529 0.94532 1.07492 1.21279 0.94726 0.96649 0.97624 1.21109 0.93851 0.98438 1.01235 1.21421 1.00807 0.91658 0.95308 1.19893 0.93353 0.95212 1.01756 1.20138 1.00074 0.92955 0.83469 1.56382 1.61543 1.57975 1.13222 1.01978 0.73337 0.72382 0.73316 1.93652 1.86290 1.84314 1.30183 1.93532 1.44421 1.82760 1.76822 1.57364 1.69253 1.35157 1.21377 1.21432 0.99204 1.03964 0.80872 1.19443 0.91167 0.88016 0.90975 1.21375 0.97250 1.09366 1.29292 0.90399 1.24870 0.97806 0.95152 0.95084 1.69896 1.35422 1.15086 1.32909 0.86916 0.85761 0.77670 0.79768 1.19740 1.20969 1.18924 1.21271 0.93208 0.98085 0.93557 0.90518 0.91961 0.91987 0.76438 0.85740 0.85072 0.84864 0.89366 0.90599 0.75325 0.94149 0.90054 0.91251 0.94906 0.95069 0.92514 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.70 59.85 0.64 1.14 16 2 N -0.73 -4.98 5.66 -68.04 -0.39 -5.36 16 3 C 0.56 5.93 7.77 -12.33 -0.10 5.83 16 4 O -0.53 -7.85 16.35 5.32 0.09 -7.76 16 5 C -0.14 -1.34 5.87 -104.97 -0.62 -1.96 16 6 C -0.08 -0.56 9.54 -39.18 -0.37 -0.93 16 7 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16 8 C -0.07 -0.61 9.69 -39.50 -0.38 -0.99 16 9 C -0.10 -1.00 5.27 -104.68 -0.55 -1.55 16 10 C 0.16 1.78 6.38 -5.19 -0.03 1.74 16 11 N -1.13 -15.60 6.04 -11.66 -0.07 -15.67 16 12 S 2.78 52.94 6.09 -107.50 -0.65 52.28 16 13 O -0.96 -22.51 16.99 -57.17 -0.97 -23.48 16 14 O -0.99 -19.85 16.34 -57.17 -0.93 -20.78 16 15 N -0.99 -19.69 3.23 -123.04 -0.40 -20.09 16 16 C 0.09 1.48 10.69 59.85 0.64 2.12 16 17 C 0.23 5.38 4.16 -5.19 -0.02 5.35 16 18 C -0.53 -15.31 9.93 -34.44 -0.34 -15.66 16 19 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 20 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 21 N -0.89 -27.79 13.96 55.43 0.77 -27.01 16 22 Si 0.87 21.54 27.37 -169.99 -4.65 16.89 16 23 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.26 -6.09 6.69 56.52 0.38 -5.71 16 26 C -0.04 -0.44 9.24 -39.19 -0.36 -0.81 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.40 1.44 6.86 -40.82 -0.28 1.16 16 31 H 0.12 0.42 6.41 -52.49 -0.34 0.08 16 32 H 0.13 0.55 8.06 -52.48 -0.42 0.12 16 33 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 34 H 0.09 0.92 7.74 -51.93 -0.40 0.51 16 35 H 0.08 0.78 8.00 -51.93 -0.42 0.36 16 36 H 0.41 5.18 8.65 -34.46 -0.30 4.88 16 37 H 0.04 0.51 8.06 -51.92 -0.42 0.09 16 38 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 39 H 0.07 1.06 7.05 -51.93 -0.37 0.70 16 40 H 0.03 0.74 7.51 -51.93 -0.39 0.35 16 41 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 43 H 0.14 1.63 7.65 -52.49 -0.40 1.23 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -38.95 377.26 -9.28 -48.24 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.77 Total: 1.95 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -1.99 Total: -4.88 kcal Atomic # 7 Polarization: -68.05 SS G_CDS: -0.08 Total: -68.13 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -1.82 Total: -52.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.65 Total: 16.89 kcal Atomic # 16 Polarization: 52.94 SS G_CDS: -0.65 Total: 52.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.95 -9.28 -48.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028321351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.210 kcal (2) G-P(sol) polarization free energy of solvation -38.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds