Wall clock time and date at job start Sat Apr 11 2020 06:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 110.99841 * 2 1 4 4 C 1.46900 * 111.00032 * 123.95514 * 2 1 3 5 5 C 1.52996 * 109.46942 * 170.00022 * 4 2 1 6 6 C 1.53006 * 109.46761 * 179.97438 * 5 4 2 7 7 N 1.46498 * 109.46682 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00297 * 90.00103 * 7 6 5 9 9 C 1.50698 * 109.46726 * 94.84184 * 8 7 6 10 10 H 1.08000 * 120.00873 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99614 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99912 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99875 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47499 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47126 * 120.00134 * 13 11 9 16 16 H 1.48504 * 109.47218 * 240.00016 * 13 11 9 17 17 C 1.34785 * 120.00091 * 269.99797 * 7 6 5 18 18 O 1.21700 * 119.99321 * 5.69513 * 17 7 6 19 19 C 1.46577 * 119.99987 * 185.70240 * 17 7 6 20 20 C 1.36650 * 125.45870 * 186.79031 * 19 17 7 21 21 C 1.37465 * 113.30273 * 179.97438 * 20 19 17 22 22 C 1.33818 * 115.09631 * 0.02562 * 21 20 19 23 23 N 1.48028 * 124.51948 * 180.02562 * 22 21 20 24 24 O 1.21798 * 120.00470 * 359.97438 * 23 22 21 25 25 O 1.21804 * 119.99828 * 180.02562 * 23 22 21 26 26 S 1.70613 * 110.95704 * 359.74684 * 22 21 20 27 27 H 1.08998 * 109.47372 * 296.04840 * 1 2 3 28 28 H 1.09005 * 109.47222 * 56.04949 * 1 2 3 29 29 H 1.09004 * 109.47338 * 176.04454 * 1 2 3 30 30 H 1.09001 * 109.46996 * 183.95416 * 3 2 1 31 31 H 1.09003 * 109.47284 * 303.94929 * 3 2 1 32 32 H 1.08993 * 109.47402 * 63.95643 * 3 2 1 33 33 H 1.09003 * 109.46696 * 49.99894 * 4 2 1 34 34 H 1.08997 * 109.46664 * 289.99948 * 4 2 1 35 35 H 1.09000 * 109.47015 * 59.99855 * 5 4 2 36 36 H 1.09004 * 109.47209 * 299.99825 * 5 4 2 37 37 H 1.08998 * 109.46913 * 60.00412 * 6 5 4 38 38 H 1.08997 * 109.46838 * 299.99921 * 6 5 4 39 39 H 1.08991 * 109.47220 * 214.84115 * 8 7 6 40 40 H 1.08997 * 109.46680 * 334.84738 * 8 7 6 41 41 H 0.96995 * 119.99680 * 180.02562 * 12 11 9 42 42 H 1.08004 * 123.34840 * 359.97173 * 20 19 17 43 43 H 1.07991 * 122.45448 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9553 0.9703 6 6 4.0528 -1.7526 2.1555 7 7 5.4976 -1.9344 1.9949 8 6 6.4263 -0.9445 2.5464 9 6 6.8820 -1.3896 3.9121 10 1 6.5168 -2.3171 4.3277 11 6 7.7652 -0.6124 4.6313 12 7 8.2095 0.5173 4.1255 13 14 8.3295 -1.1636 6.3245 14 1 7.6873 -2.4591 6.6631 15 1 9.8056 -1.3272 6.3254 16 1 7.9440 -0.1425 7.3315 17 6 5.9726 -3.0124 1.3400 18 8 5.2026 -3.7799 0.7928 19 6 7.4162 -3.2605 1.2869 20 6 8.0263 -4.2366 0.5505 21 6 9.3943 -4.2447 0.6855 22 6 9.8894 -3.3089 1.5040 23 7 11.3287 -3.1293 1.7995 24 8 12.1526 -3.8629 1.2833 25 8 11.6891 -2.2485 2.5597 26 16 8.6410 -2.3456 2.1555 27 1 -0.3634 0.4513 0.9232 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8723 0.9232 33 1 1.5089 -1.7407 1.1755 34 1 1.7975 -0.2247 2.0627 35 1 3.9909 0.0194 0.9322 36 1 3.7024 -1.4966 0.0450 37 1 3.5664 -2.7273 2.1938 38 1 3.8549 -1.2110 3.0804 39 1 7.2898 -0.8502 1.8881 40 1 5.9239 0.0194 2.6272 41 1 8.8311 1.0638 4.6312 42 1 7.4873 -4.9325 -0.0753 43 1 10.0234 -4.9548 0.1695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069576781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:28 Heat of formation + Delta-G solvation = -13.885494 kcal Electronic energy + Delta-G solvation = -27761.975795 eV Core-core repulsion = 23744.072187 eV Total energy + Delta-G solvation = -4017.903608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.13152 -41.08381 -38.97069 -38.48778 -37.63340 -37.03818 -35.08753 -33.34103 -31.68045 -29.57501 -28.55308 -28.44679 -26.84313 -25.29527 -24.85263 -23.86845 -21.95169 -21.63063 -21.39074 -19.98897 -19.03998 -18.78125 -18.67196 -18.48664 -17.26984 -16.77783 -16.55166 -16.46476 -16.27947 -15.96612 -15.50365 -15.29338 -14.80236 -14.53825 -14.49010 -14.20446 -14.12888 -13.46238 -13.36104 -13.22741 -13.20343 -12.82315 -12.78282 -12.71157 -12.59618 -12.51621 -12.46548 -12.36241 -12.33002 -12.20273 -11.84617 -11.51587 -11.38989 -11.20168 -10.77928 -10.40064 -9.77056 -9.59879 -9.30245 -8.45107 -6.51375 -1.47770 -0.12210 -0.04884 0.69592 0.84359 1.16008 1.36955 1.44808 1.49835 1.99417 2.03250 2.28850 2.91151 3.04534 3.44955 3.84586 3.94346 4.11130 4.13021 4.22843 4.36803 4.44623 4.49889 4.54857 4.57685 4.61534 4.67886 4.72067 4.79018 4.80760 4.95508 4.98659 5.01660 5.02541 5.15468 5.20020 5.25373 5.45334 5.60566 5.66413 6.06771 6.12366 6.25495 6.48762 6.53649 6.99188 7.10192 8.56342 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011787 B = 0.003789 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.961004 B = 7388.859493 C = 8914.611464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.567 5.567 3 C 0.021 3.979 4 C 0.065 3.935 5 C -0.117 4.117 6 C 0.123 3.877 7 N -0.590 5.590 8 C 0.228 3.772 9 C -0.533 4.533 10 H 0.072 0.928 11 C 0.055 3.945 12 N -0.874 5.874 13 Si 0.925 3.075 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.266 1.266 17 C 0.583 3.417 18 O -0.564 6.564 19 C -0.267 4.267 20 C -0.077 4.077 21 C -0.070 4.070 22 C -0.308 4.308 23 N 0.068 4.932 24 O -0.152 6.152 25 O -0.216 6.216 26 S 0.494 5.506 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.056 0.944 41 H 0.281 0.719 42 H 0.183 0.817 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.460 -0.803 -4.711 10.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.291 5.291 3 C -0.127 4.127 4 C -0.064 4.064 5 C -0.156 4.156 6 C 0.001 3.999 7 N -0.320 5.320 8 C 0.105 3.895 9 C -0.581 4.581 10 H 0.090 0.910 11 C -0.154 4.154 12 N -0.508 5.508 13 Si 0.749 3.251 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.191 1.191 17 C 0.371 3.629 18 O -0.446 6.446 19 C -0.391 4.391 20 C -0.110 4.110 21 C -0.107 4.107 22 C -0.510 4.510 23 N 0.581 4.419 24 O -0.373 6.373 25 O -0.418 6.418 26 S 0.780 5.220 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.200 0.800 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.143 -0.006 -4.511 11.101 hybrid contribution 0.956 -0.821 0.824 1.506 sum -9.187 -0.826 -3.687 9.933 Atomic orbital electron populations 1.22418 0.86001 1.02788 1.01071 1.61953 1.09111 1.14524 1.43500 1.22444 1.00821 0.88407 1.01001 1.21972 0.94083 0.98697 0.91610 1.21791 0.95621 1.00048 0.98183 1.21472 0.78279 1.01263 0.98932 1.48078 1.08465 1.22362 1.53048 1.19554 0.87987 0.89087 0.92896 1.21786 1.26788 1.07986 1.01515 0.90992 1.25452 0.95159 0.94230 1.00604 1.69912 1.29745 1.12040 1.39146 0.85951 0.78748 0.79562 0.80799 1.18657 1.20398 1.19128 1.16989 0.85766 0.81341 0.78815 1.90742 1.57980 1.48263 1.47650 1.25540 0.98930 1.06657 1.08023 1.20563 0.91693 0.98647 1.00121 1.20074 0.95740 0.98145 0.96783 1.28285 0.87370 1.18039 1.17277 1.42834 1.02481 0.98592 0.97966 1.94418 1.48606 1.42219 1.52104 1.94582 1.85243 1.28107 1.33853 1.87669 0.85510 1.19420 1.29421 0.95167 0.90469 0.90966 0.91992 0.90376 0.95224 0.90146 0.93861 0.92077 0.92718 0.90379 0.89099 0.94906 0.92591 0.90927 0.80017 0.80566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.57 127.69 1.22 1.64 16 2 N -0.57 -12.46 5.02 -948.84 -4.76 -17.22 16 3 C 0.02 0.43 9.32 127.69 1.19 1.62 16 4 C 0.06 1.46 4.96 86.30 0.43 1.89 16 5 C -0.12 -3.22 5.46 30.60 0.17 -3.06 16 6 C 0.12 3.73 5.34 86.38 0.46 4.19 16 7 N -0.59 -21.47 2.47 -830.98 -2.05 -23.52 16 8 C 0.23 9.09 4.72 85.63 0.40 9.49 16 9 C -0.53 -22.82 6.56 25.60 0.17 -22.65 16 10 H 0.07 3.15 7.81 -2.91 -0.02 3.13 16 11 C 0.05 2.43 4.85 84.66 0.41 2.84 16 12 N -0.87 -40.54 13.29 21.45 0.28 -40.25 16 13 Si 0.92 36.74 29.54 68.60 2.03 38.77 16 14 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 15 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 17 C 0.58 22.27 7.58 86.42 0.66 22.93 16 18 O -0.56 -22.89 16.49 -4.35 -0.07 -22.96 16 19 C -0.27 -9.70 6.19 24.07 0.15 -9.55 16 20 C -0.08 -2.39 10.02 21.72 0.22 -2.17 16 21 C -0.07 -2.16 9.75 21.08 0.21 -1.95 16 22 C -0.31 -11.50 7.28 80.92 0.59 -10.91 16 23 N 0.07 2.74 4.45 -50.90 -0.23 2.52 16 24 O -0.15 -5.76 18.89 18.89 0.36 -5.41 16 25 O -0.22 -9.49 18.99 18.88 0.36 -9.13 16 26 S 0.49 19.42 15.20 -56.49 -0.86 18.56 16 27 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.08 1.11 8.12 -2.38 -0.02 1.09 16 29 H 0.07 1.13 8.12 -2.38 -0.02 1.11 16 30 H 0.06 1.37 6.47 -2.39 -0.02 1.36 16 31 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 32 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 1.73 8.06 -2.39 -0.02 1.71 16 34 H 0.04 0.91 8.12 -2.39 -0.02 0.90 16 35 H 0.06 1.73 6.55 -2.39 -0.02 1.71 16 36 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.08 2.37 7.50 -2.39 -0.02 2.35 16 38 H 0.09 2.58 8.07 -2.39 -0.02 2.56 16 39 H 0.03 1.41 4.96 -18.83 -0.09 1.31 16 40 H 0.06 2.29 8.03 -2.39 -0.02 2.27 16 41 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 42 H 0.18 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.18 4.43 7.97 -2.91 -0.02 4.40 16 Total: -1.00 -52.11 375.99 2.27 -49.84 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.94 Total: 14.51 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 6.27 Total: -5.70 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -6.75 Total: -78.47 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: 0.64 Total: -37.50 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: 19.42 SS G_CDS: -0.86 Total: 18.56 kcal Total: -52.11 2.27 -49.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069576781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.955 kcal (2) G-P(sol) polarization free energy of solvation -52.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds