Wall clock time and date at job start Sat Apr 11 2020 06:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99984 * 2 1 4 4 C 1.53004 * 109.47454 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46986 * 64.99600 * 4 3 2 6 6 C 1.46496 * 120.00628 * 270.00225 * 5 4 3 7 7 C 1.50699 * 109.47598 * 270.00465 * 6 5 4 8 8 H 1.08005 * 119.99628 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00538 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00182 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47170 * 89.99666 * 11 9 7 13 13 H 1.48495 * 109.46883 * 209.99839 * 11 9 7 14 14 H 1.48496 * 109.47123 * 329.99923 * 11 9 7 15 15 C 1.34774 * 119.99828 * 90.00387 * 5 4 3 16 16 O 1.21279 * 120.00472 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00020 * 0.02562 * 15 5 4 18 18 C 1.50698 * 109.47294 * 180.02562 * 17 15 5 19 19 C 1.38172 * 120.01804 * 264.72735 * 18 17 15 20 20 C 1.38341 * 120.04210 * 179.72164 * 19 18 17 21 21 Cl 1.73595 * 119.96141 * 180.27272 * 20 19 18 22 22 C 1.38396 * 120.08196 * 0.55051 * 20 19 18 23 23 C 1.38121 * 120.04475 * 359.72353 * 22 20 19 24 24 C 1.38699 * 120.02422 * 84.99599 * 18 17 15 25 25 O 1.35919 * 120.04161 * 0.02562 * 24 18 17 26 26 C 1.42904 * 116.99992 * 179.97438 * 25 24 18 27 27 H 1.08996 * 109.47283 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47304 * 300.00130 * 1 2 3 29 29 H 1.09002 * 109.47200 * 59.99688 * 1 2 3 30 30 H 1.09003 * 109.47458 * 60.00083 * 3 2 1 31 31 H 1.09002 * 109.47344 * 300.00334 * 3 2 1 32 32 H 1.09004 * 109.46898 * 305.00005 * 4 3 2 33 33 H 1.08993 * 109.47182 * 185.00344 * 4 3 2 34 34 H 1.09008 * 109.47096 * 29.99824 * 6 5 4 35 35 H 1.09003 * 109.47776 * 149.99700 * 6 5 4 36 36 H 0.97002 * 119.99991 * 180.02562 * 10 9 7 37 37 H 1.09001 * 109.46953 * 299.99667 * 17 15 5 38 38 H 1.09000 * 109.47318 * 59.99264 * 17 15 5 39 39 H 1.07997 * 119.97724 * 359.97438 * 19 18 17 40 40 H 1.07997 * 119.97548 * 179.70038 * 22 20 19 41 41 H 1.07994 * 120.02130 * 179.97438 * 23 22 20 42 42 H 1.09004 * 109.46786 * 60.00064 * 26 25 24 43 43 H 1.08997 * 109.46938 * 179.97438 * 26 25 24 44 44 H 1.08999 * 109.47315 * 300.00624 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1052 -0.8919 -1.3428 7 6 5.5009 -1.2977 -0.9449 8 1 6.2197 -0.5458 -0.6544 9 6 5.8603 -2.6288 -0.9517 10 7 7.0785 -2.9828 -0.6050 11 14 4.6172 -3.9293 -1.4549 12 1 4.7026 -4.1550 -2.9201 13 1 4.9112 -5.1976 -0.7407 14 1 3.2498 -3.4689 -1.1039 15 6 4.2614 1.3338 -2.3217 16 8 4.6263 0.8204 -3.3582 17 6 4.1287 2.8321 -2.2290 18 6 4.5040 3.4524 -3.5501 19 6 5.7896 3.9151 -3.7562 20 6 6.1362 4.4794 -4.9707 21 17 7.7538 5.0535 -5.2298 22 6 5.1934 4.5920 -5.9776 23 6 3.9057 4.1359 -5.7734 24 6 3.5578 3.5644 -4.5580 25 8 2.2911 3.1153 -4.3550 26 6 1.3691 3.2635 -5.4367 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6886 1.8465 0.8900 31 1 1.6885 1.8465 -0.8900 32 1 3.8514 0.5683 0.8410 33 1 3.9784 2.1766 0.0890 34 1 3.3853 -1.3629 -0.6733 35 1 3.9119 -1.2114 -2.3669 36 1 7.3314 -3.9193 -0.6102 37 1 3.0982 3.0912 -1.9861 38 1 4.7912 3.2080 -1.4493 39 1 6.5253 3.8324 -2.9699 40 1 5.4646 5.0373 -6.9234 41 1 3.1702 4.2243 -6.5592 42 1 1.7376 2.7180 -6.3055 43 1 0.3978 2.8654 -5.1433 44 1 1.2689 4.3197 -5.6867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214949.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:46 Heat of formation + Delta-G solvation = -117.648080 kcal Electronic energy + Delta-G solvation = -28161.668129 eV Core-core repulsion = 24104.928580 eV Total energy + Delta-G solvation = -4056.739549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.123 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.55717 -40.45239 -38.75829 -38.59004 -37.18258 -36.49320 -34.80877 -33.92318 -31.45737 -30.99528 -29.87753 -28.52892 -27.88286 -27.05591 -24.50101 -23.94544 -23.25365 -22.64122 -19.99072 -19.10454 -18.98379 -18.16339 -17.70949 -17.44541 -17.06829 -16.83544 -16.68120 -16.56365 -16.06005 -15.83816 -15.51202 -15.39563 -14.89011 -14.74048 -14.43523 -14.23533 -14.08413 -13.77261 -13.54101 -13.40937 -13.08639 -13.00623 -12.87409 -12.76688 -12.64249 -12.56761 -12.42516 -12.19718 -11.99290 -11.90547 -11.71143 -11.69385 -11.61761 -10.80837 -10.70899 -10.49860 -9.96019 -9.33803 -9.07164 -8.31994 -6.34757 0.16857 0.22045 1.18413 1.31651 1.34438 1.45544 1.88087 2.27909 2.32421 2.33299 2.67471 2.98857 3.04266 3.55732 3.73252 3.82927 4.04901 4.10304 4.18548 4.29418 4.32767 4.39559 4.40618 4.42095 4.49608 4.57218 4.59032 4.63978 4.65309 4.72299 4.83179 4.88671 4.99406 5.02120 5.03846 5.08526 5.16468 5.24142 5.50644 5.58165 5.69229 6.27781 6.35213 6.36693 6.65766 6.79930 7.25791 7.49907 8.84943 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009578 B = 0.003947 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.559836 B = 7091.649618 C = 8743.531603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.047 3.953 4 C 0.102 3.898 5 N -0.594 5.594 6 C 0.238 3.762 7 C -0.530 4.530 8 H 0.032 0.968 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.941 3.059 12 H -0.278 1.278 13 H -0.272 1.272 14 H -0.243 1.243 15 C 0.504 3.496 16 O -0.589 6.589 17 C -0.082 4.082 18 C -0.102 4.102 19 C -0.074 4.074 20 C -0.083 4.083 21 Cl -0.073 7.073 22 C -0.071 4.071 23 C -0.196 4.196 24 C 0.138 3.862 25 O -0.328 6.328 26 C 0.017 3.983 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.005 0.995 36 H 0.267 0.733 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.056 0.944 43 H 0.115 0.885 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.546 20.217 -5.509 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.030 4.030 4 C -0.021 4.021 5 N -0.324 5.324 6 C 0.115 3.885 7 C -0.569 4.569 8 H 0.050 0.950 9 C -0.185 4.185 10 N -0.586 5.586 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.198 1.198 14 H -0.167 1.167 15 C 0.293 3.707 16 O -0.470 6.470 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.092 4.092 20 C -0.109 4.109 21 Cl -0.045 7.045 22 C -0.090 4.090 23 C -0.215 4.215 24 C 0.092 3.908 25 O -0.241 6.241 26 C -0.077 4.077 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.023 0.977 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.156 0.844 40 H 0.177 0.823 41 H 0.183 0.817 42 H 0.075 0.925 43 H 0.134 0.866 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.107 19.586 -5.847 25.417 hybrid contribution 0.242 -0.847 -0.403 0.969 sum -14.864 18.738 -6.250 24.721 Atomic orbital electron populations 1.22855 0.79988 1.03106 1.00857 1.87989 1.21173 1.29041 1.95560 1.23170 0.93024 0.84819 1.02013 1.21926 0.93498 1.00373 0.86268 1.47873 1.65054 1.07144 1.12326 1.19148 0.94903 0.78556 0.95870 1.21619 0.97489 0.92904 1.44890 0.94992 1.25751 0.97198 1.00885 0.94618 1.70041 1.20345 1.17982 1.50217 0.85800 0.80685 0.78554 0.78487 1.20382 1.19750 1.16678 1.21123 0.76452 0.90229 0.82864 1.90636 1.48485 1.76309 1.31537 1.20577 1.06091 0.89283 0.96177 1.18747 0.92577 1.03013 0.95975 1.20874 0.95150 0.96305 0.96907 1.20816 0.87240 1.06295 0.96583 1.98347 1.21764 1.87676 1.96692 1.21091 0.91391 0.97808 0.98672 1.21428 0.98335 1.04491 0.97220 1.19006 0.84899 0.93208 0.93716 1.86066 1.18081 1.77579 1.42406 1.23382 0.92149 1.03145 0.89043 0.89957 0.92120 0.93666 0.88960 0.92530 0.90535 0.85922 0.93459 0.97656 0.92391 0.85588 0.85781 0.84423 0.82332 0.81701 0.92502 0.86643 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -12.76 9.53 -148.98 -1.42 -14.18 16 3 C 0.05 1.13 6.28 71.98 0.45 1.58 16 4 C 0.10 3.06 5.62 86.38 0.49 3.54 16 5 N -0.59 -24.95 2.42 -826.16 -2.00 -26.95 16 6 C 0.24 12.39 4.05 85.63 0.35 12.74 16 7 C -0.53 -32.52 9.94 25.60 0.25 -32.26 16 8 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 9 C 0.01 0.81 5.47 84.66 0.46 1.28 16 10 N -0.95 -61.60 13.96 21.45 0.30 -61.30 16 11 Si 0.94 47.16 27.47 68.60 1.88 49.05 16 12 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.24 -11.36 6.54 99.48 0.65 -10.71 16 15 C 0.50 20.99 7.67 87.66 0.67 21.66 16 16 O -0.59 -30.86 15.61 -3.02 -0.05 -30.90 16 17 C -0.08 -2.33 4.11 29.10 0.12 -2.21 16 18 C -0.10 -3.00 4.39 -19.77 -0.09 -3.09 16 19 C -0.07 -2.12 9.46 22.28 0.21 -1.91 16 20 C -0.08 -2.16 6.32 22.33 0.14 -2.02 16 21 Cl -0.07 -1.79 28.95 -2.72 -0.08 -1.87 16 22 C -0.07 -1.56 9.82 22.28 0.22 -1.34 16 23 C -0.20 -4.25 9.04 22.36 0.20 -4.05 16 24 C 0.14 3.71 6.66 22.50 0.15 3.86 16 25 O -0.33 -8.24 9.63 -92.64 -0.89 -9.13 16 26 C 0.02 0.26 9.81 113.37 1.11 1.37 16 27 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.26 7.30 -2.39 -0.02 1.24 16 32 H 0.08 2.56 8.07 -2.38 -0.02 2.54 16 33 H 0.12 2.65 6.44 -2.39 -0.02 2.64 16 34 H 0.05 2.40 6.17 -2.38 -0.01 2.39 16 35 H 0.01 0.30 6.85 -2.39 -0.02 0.29 16 36 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 37 H 0.13 2.87 6.81 -2.39 -0.02 2.85 16 38 H 0.12 2.83 7.31 -2.39 -0.02 2.82 16 39 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.17 2.42 6.30 -2.91 -0.02 2.40 16 42 H 0.06 0.86 7.66 -2.38 -0.02 0.84 16 43 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 0.79 7.66 -2.39 -0.02 0.78 16 Total: -1.00 -86.30 381.72 4.69 -81.60 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.95 Total: 12.73 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 5.99 Total: 0.97 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -1.70 Total: -88.26 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -2.36 Total: -54.22 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 1.88 Total: 49.05 kcal Atomic # 17 Polarization: -1.79 SS G_CDS: -0.08 Total: -1.87 kcal Total: -86.30 4.69 -81.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214949.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.043 kcal (2) G-P(sol) polarization free energy of solvation -86.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds