Wall clock time and date at job start Sat Apr 11 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35963 * 116.99796 * 2 1 4 4 C 1.38078 * 120.00050 * 359.97114 * 3 2 1 5 5 C 1.39978 * 119.83607 * 180.02562 * 4 3 2 6 6 C 1.46963 * 120.07386 * 180.02562 * 5 4 3 7 7 C 1.35035 * 119.99832 * 179.97438 * 6 5 4 8 8 C 1.46253 * 119.99776 * 180.02562 * 7 6 5 9 9 O 1.21722 * 120.00371 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99535 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00066 * 359.97438 * 10 8 7 12 12 C 1.46503 * 119.99808 * 180.02562 * 10 8 7 13 13 C 1.53001 * 109.46969 * 90.00032 * 12 10 8 14 14 F 1.39899 * 109.47118 * 299.99486 * 13 12 10 15 15 F 1.39896 * 109.47459 * 60.00179 * 13 12 10 16 16 C 1.40025 * 119.84332 * 0.02562 * 5 4 3 17 17 C 1.37645 * 120.00280 * 0.02562 * 16 5 4 18 18 C 1.39056 * 120.15966 * 359.97438 * 17 16 5 19 19 O 1.35619 * 119.92189 * 180.02562 * 18 17 16 20 20 C 1.34760 * 116.99758 * 354.37702 * 19 18 17 21 21 H 1.08008 * 120.00105 * 5.06936 * 20 19 18 22 22 C 1.38701 * 120.00139 * 185.06246 * 20 19 18 23 23 N 1.31523 * 120.00511 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99755 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46810 * 89.99991 * 24 22 20 26 26 H 1.48502 * 109.47003 * 209.99682 * 24 22 20 27 27 H 1.48493 * 109.47095 * 329.99650 * 24 22 20 28 28 H 1.09005 * 109.47749 * 300.00536 * 1 2 3 29 29 H 1.09009 * 109.47262 * 60.00571 * 1 2 3 30 30 H 1.09003 * 109.47293 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.07640 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.00506 * 359.96404 * 6 5 4 33 33 H 1.08002 * 119.99659 * 359.97438 * 7 6 5 34 34 H 1.08998 * 109.46878 * 90.00148 * 11 10 8 35 35 H 1.09003 * 109.46902 * 210.00406 * 11 10 8 36 36 H 1.09000 * 109.46875 * 330.00087 * 11 10 8 37 37 H 1.08999 * 109.47001 * 209.99893 * 12 10 8 38 38 H 1.08999 * 109.47034 * 329.99594 * 12 10 8 39 39 H 1.09000 * 109.46557 * 180.02562 * 13 12 10 40 40 H 1.08003 * 119.99766 * 180.29962 * 16 5 4 41 41 H 1.07997 * 119.92052 * 180.02562 * 17 16 5 42 42 H 0.96996 * 120.00066 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2941 2.3695 -0.0006 5 6 1.9331 3.6149 -0.0011 6 6 1.1378 4.8507 -0.0012 7 6 1.7558 6.0513 -0.0012 8 6 0.9643 7.2812 -0.0007 9 8 -0.2515 7.2225 -0.0008 10 7 1.5812 8.4795 -0.0012 11 6 3.0446 8.5500 -0.0017 12 6 0.7884 9.7115 -0.0002 13 6 0.5141 10.1401 1.4427 14 9 -0.1935 9.1298 2.1028 15 9 1.7277 10.3660 2.1009 16 6 3.3318 3.6804 -0.0016 17 6 4.0751 2.5218 -0.0021 18 6 3.4404 1.2846 -0.0015 19 8 4.1775 0.1462 -0.0015 20 6 5.5130 0.2821 -0.1196 21 1 5.9572 1.2666 -0.1263 22 6 6.3173 -0.8423 -0.2324 23 7 7.6207 -0.7097 -0.3482 24 14 5.5490 -2.5450 -0.2212 25 1 5.2179 -2.9477 -1.6117 26 1 6.5090 -3.5174 0.3604 27 1 4.3097 -2.5236 0.5965 28 1 -0.3635 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2155 2.3143 -0.0007 32 1 0.0590 4.7987 -0.0014 33 1 2.8346 6.1033 -0.0007 34 1 3.4071 8.5673 -1.0295 35 1 3.3648 9.4566 0.5118 36 1 3.4505 7.6787 0.5122 37 1 1.3397 10.4987 -0.5145 38 1 -0.1571 9.5355 -0.5130 39 1 -0.0761 11.0565 1.4434 40 1 3.8275 4.6399 0.0029 41 1 5.1538 2.5739 -0.0020 42 1 8.1831 -1.4961 -0.4267 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103400179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:51 Heat of formation + Delta-G solvation = -146.651016 kcal Electronic energy + Delta-G solvation = -28793.224107 eV Core-core repulsion = 24183.430216 eV Total energy + Delta-G solvation = -4609.793891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.10898 -47.11584 -39.99521 -39.70813 -37.87258 -36.76782 -35.76909 -33.18523 -32.46670 -30.72454 -29.83521 -28.75767 -26.92195 -26.59109 -25.54779 -24.23305 -22.66251 -21.76925 -20.50328 -18.76258 -18.23094 -17.99191 -17.85983 -17.59763 -17.00291 -16.79569 -16.35899 -15.72570 -15.43127 -15.37278 -14.79796 -14.65322 -14.26234 -14.04631 -13.96838 -13.82001 -13.71119 -13.48328 -13.27310 -13.14312 -12.80709 -12.73306 -12.60415 -12.40233 -12.28976 -11.94854 -11.85297 -11.63683 -11.49422 -11.09579 -10.99956 -10.89898 -10.75350 -10.31106 -9.87233 -9.61155 -9.48145 -8.97575 -8.87159 -8.10140 -7.07227 -6.59615 -4.19363 0.90106 1.98993 2.39852 2.71399 3.16063 3.20497 3.35919 3.38767 3.63897 3.77410 3.98046 4.14275 4.14718 4.36333 4.47848 4.55516 4.71487 4.90706 4.94330 5.00453 5.11514 5.16663 5.28487 5.32854 5.41746 5.42804 5.47124 5.53980 5.64886 5.70203 5.87065 6.04463 6.10841 6.32334 6.36485 6.49093 6.73621 6.88677 7.12779 7.20859 7.30804 7.48435 7.77317 7.97079 8.15461 8.74023 9.35782 10.46092 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.017912 B = 0.002293 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.864751 B =12206.170749 C =13389.359116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.051 3.949 4 C -0.135 4.135 5 C -0.156 4.156 6 C 0.034 3.966 7 C -0.273 4.273 8 C 0.558 3.442 9 O -0.545 6.545 10 N -0.620 5.620 11 C 0.077 3.923 12 C 0.069 3.931 13 C 0.243 3.757 14 F -0.195 7.195 15 F -0.207 7.207 16 C -0.062 4.062 17 C -0.210 4.210 18 C 0.156 3.844 19 O -0.188 6.188 20 C -0.388 4.388 21 H 0.111 0.889 22 C 0.067 3.933 23 N -0.866 5.866 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.254 1.254 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.144 0.856 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 18.297 -0.012 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.158 4.158 6 C 0.014 3.986 7 C -0.294 4.294 8 C 0.352 3.648 9 O -0.424 6.424 10 N -0.354 5.354 11 C -0.066 4.066 12 C -0.056 4.056 13 C 0.188 3.812 14 F -0.176 7.176 15 F -0.188 7.188 16 C -0.081 4.081 17 C -0.229 4.229 18 C 0.101 3.899 19 O -0.091 6.091 20 C -0.463 4.463 21 H 0.128 0.872 22 C -0.138 4.138 23 N -0.501 5.501 24 Si 0.730 3.270 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.177 1.177 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.162 0.838 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.131 17.663 0.008 21.428 hybrid contribution -0.081 -0.400 0.114 0.424 sum -12.212 17.263 0.122 21.147 Atomic orbital electron populations 1.22938 0.79871 1.03149 1.00682 1.86177 1.19884 1.26356 1.89881 1.18036 0.89258 0.84642 1.07405 1.20895 0.98729 0.90833 1.05022 1.18234 0.92840 0.91454 1.13237 1.22265 0.99209 0.90920 0.86167 1.22565 1.00078 0.91412 1.15353 1.18463 0.87549 0.83701 0.75062 1.90779 1.14055 1.87166 1.50427 1.47561 1.07290 1.05006 1.75542 1.21936 0.78629 1.03893 1.02112 1.22527 1.00160 0.88704 0.94211 1.22508 0.79069 0.90459 0.89170 1.93050 1.78339 1.63412 1.82785 1.92967 1.47376 1.95141 1.83332 1.20972 0.92410 0.97564 0.97106 1.20972 1.01251 0.90509 1.10168 1.18621 0.87701 0.87037 0.96575 1.83589 1.20452 1.27526 1.77541 1.20907 0.77168 0.97201 1.50974 0.87168 1.24520 0.94534 0.99757 0.95037 1.69622 1.03181 1.32077 1.45225 0.86166 0.79903 0.81354 0.79624 1.19620 1.20609 1.17744 0.93242 0.93246 0.88935 0.85635 0.85842 0.85318 0.92247 0.90796 0.90100 0.87657 0.86940 0.86908 0.86395 0.83845 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -6.02 10.28 -34.24 -0.35 -6.37 16 3 C 0.05 1.03 6.70 -39.12 -0.26 0.77 16 4 C -0.14 -2.30 8.77 -38.99 -0.34 -2.64 16 5 C -0.16 -2.59 5.87 -105.04 -0.62 -3.21 16 6 C 0.03 0.51 9.45 -37.19 -0.35 0.15 16 7 C -0.27 -3.73 8.61 -37.50 -0.32 -4.05 16 8 C 0.56 7.82 7.20 -13.04 -0.09 7.72 16 9 O -0.55 -9.17 15.21 5.17 0.08 -9.09 16 10 N -0.62 -6.55 2.79 -183.28 -0.51 -7.06 16 11 C 0.08 0.61 9.94 59.85 0.60 1.20 16 12 C 0.07 0.53 5.70 -4.04 -0.02 0.51 16 13 C 0.24 2.00 5.60 37.16 0.21 2.21 16 14 F -0.19 -2.50 16.26 2.25 0.04 -2.46 16 15 F -0.21 -2.00 16.24 2.25 0.04 -1.97 16 16 C -0.06 -1.06 9.40 -39.13 -0.37 -1.43 16 17 C -0.21 -4.24 9.14 -39.49 -0.36 -4.60 16 18 C 0.16 3.52 6.67 -38.76 -0.26 3.26 16 19 O -0.19 -4.88 8.35 -13.96 -0.12 -4.99 16 20 C -0.39 -10.46 9.94 30.90 0.31 -10.16 16 21 H 0.11 2.97 5.42 -52.48 -0.28 2.69 16 22 C 0.07 1.81 5.49 -17.51 -0.10 1.72 16 23 N -0.87 -23.91 13.96 55.48 0.77 -23.13 16 24 Si 0.90 21.19 28.62 -169.99 -4.86 16.32 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.25 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 29 H 0.05 0.58 7.66 -51.92 -0.40 0.19 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.13 1.77 6.28 -52.49 -0.33 1.44 16 32 H 0.12 1.80 7.52 -52.49 -0.39 1.40 16 33 H 0.13 1.53 4.21 -52.49 -0.22 1.31 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.49 7.25 -51.93 -0.38 0.11 16 36 H 0.08 0.66 6.09 -51.93 -0.32 0.35 16 37 H 0.11 0.46 8.07 -51.93 -0.42 0.04 16 38 H 0.11 0.93 7.42 -51.93 -0.39 0.54 16 39 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.12 1.66 6.15 -52.48 -0.32 1.34 16 41 H 0.14 2.97 5.62 -52.49 -0.29 2.67 16 42 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -33.13 363.41 -4.98 -38.11 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.54 Total: 2.33 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.99 Total: -7.16 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.26 Total: -30.19 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.39 Total: -20.46 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.86 Total: 16.32 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.13 -4.98 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103400179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.544 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds