Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 H 1.09002 * 109.47319 * 55.00263 * 5 4 2 7 7 C 1.53007 * 109.47209 * 175.00208 * 5 4 2 8 8 N 1.46495 * 109.47416 * 295.00201 * 5 4 2 9 9 C 1.34775 * 120.00457 * 155.00022 * 8 5 4 10 10 O 1.21618 * 119.99637 * 359.97438 * 9 8 5 11 11 C 1.47419 * 120.00533 * 180.02562 * 9 8 5 12 12 C 1.36087 * 126.45277 * 180.02562 * 11 9 8 13 13 O 1.34254 * 106.95474 * 179.97438 * 12 11 9 14 14 C 1.34053 * 108.22332 * 359.97438 * 13 12 11 15 15 N 1.29930 * 109.24283 * 359.72285 * 14 13 12 16 16 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 274.72131 * 16 2 1 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 2 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 2 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46850 * 90.00589 * 25 23 21 27 27 H 1.48498 * 109.47329 * 210.00016 * 25 23 21 28 28 H 1.48499 * 109.47220 * 330.01003 * 25 23 21 29 29 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 33 33 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 34 34 H 1.09000 * 109.46920 * 180.02562 * 7 5 4 35 35 H 1.08997 * 109.46639 * 300.00346 * 7 5 4 36 36 H 1.09002 * 109.46936 * 59.99819 * 7 5 4 37 37 H 0.97009 * 120.00171 * 335.00071 * 8 5 4 38 38 H 1.08005 * 126.52532 * 0.02562 * 12 11 9 39 39 H 1.08003 * 125.37787 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00384 * 95.00578 * 16 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 42 42 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 43 43 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 1 3.9954 -0.9922 -0.3868 7 6 4.0851 -1.4383 -2.4925 8 7 3.9479 0.7894 -1.4925 9 6 5.1611 1.2136 -1.0868 10 8 5.9376 0.4320 -0.5718 11 6 5.5464 2.6252 -1.2662 12 6 6.7305 3.1919 -0.9076 13 8 6.6633 4.4886 -1.2492 14 6 5.4648 4.7138 -1.8059 15 7 4.7878 3.6051 -1.8281 16 7 2.0183 -0.6906 1.1962 17 6 2.1523 -0.0169 2.3557 18 8 1.8638 1.1599 2.4102 19 6 2.6605 -0.7257 3.5847 20 16 2.7270 0.4388 4.9688 21 6 3.3357 -0.6251 6.2346 22 1 3.5447 -1.6616 6.0147 23 6 3.5475 -0.1307 7.5142 24 7 3.2932 1.1328 7.7821 25 14 4.1921 -1.2586 8.8564 26 1 5.6767 -1.2203 8.8645 27 1 3.6782 -0.8047 10.1736 28 1 3.7342 -2.6474 8.5982 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 5.1715 -1.3617 -2.5381 35 1 3.8000 -2.4819 -2.3595 36 1 3.6545 -1.0593 -3.4194 37 1 3.3283 1.4129 -1.9029 38 1 7.5659 2.6934 -0.4384 39 1 5.1187 5.6655 -2.1814 40 1 2.2491 -1.6318 1.1526 41 1 1.9894 -1.5476 3.8337 42 1 3.6590 -1.1179 3.3911 43 1 3.4409 1.4781 8.6764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735558420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = -60.817222 kcal Electronic energy + Delta-G solvation = -27139.328407 eV Core-core repulsion = 23119.389687 eV Total energy + Delta-G solvation = -4019.938720 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.66136 -40.06614 -39.16780 -36.92241 -35.12101 -34.63863 -32.39352 -31.85578 -31.05594 -30.34213 -28.49185 -27.03448 -25.44618 -24.73322 -23.03045 -22.04059 -21.21019 -20.76628 -20.14832 -18.76962 -17.79908 -16.97641 -16.85463 -16.56110 -16.26532 -15.91760 -15.37829 -14.91389 -14.80884 -14.76997 -14.36375 -14.15410 -13.94035 -13.77693 -13.58900 -13.13746 -12.89296 -12.68227 -12.55627 -12.35938 -12.27347 -11.90151 -11.67421 -11.48355 -11.17164 -11.09824 -11.02806 -10.98755 -10.90313 -10.72463 -10.32230 -9.77686 -9.47677 -9.31568 -9.20769 -9.03443 -8.83890 -8.19190 -6.45390 -6.18227 -3.88064 0.90275 1.79757 2.42129 2.91963 3.09223 3.17116 3.17624 3.25001 3.30551 3.35473 3.75281 3.78101 4.24042 4.31801 4.56288 4.60061 4.64939 4.88258 5.11728 5.16895 5.18289 5.24069 5.25349 5.30058 5.37064 5.38823 5.48097 5.53163 5.64166 5.71254 5.75211 5.85061 5.94994 5.96154 6.06204 6.19626 6.22376 6.29538 6.73328 7.07313 7.39493 7.63172 7.77665 8.01951 8.38903 8.69164 9.27166 10.89274 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.003017 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.720029 B = 9278.716102 C =10737.030910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.139 3.861 6 H 0.095 0.905 7 C -0.163 4.163 8 N -0.706 5.706 9 C 0.605 3.395 10 O -0.532 6.532 11 C -0.075 4.075 12 C 0.020 3.980 13 O -0.199 6.199 14 C 0.179 3.821 15 N -0.467 5.467 16 N -0.733 5.733 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.407 0.593 38 H 0.231 0.769 39 H 0.255 0.745 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 0.005 -25.716 25.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.036 3.964 3 H 0.107 0.893 4 C -0.174 4.174 5 C 0.035 3.965 6 H 0.113 0.887 7 C -0.221 4.221 8 N -0.358 5.358 9 C 0.391 3.609 10 O -0.408 6.408 11 C -0.195 4.195 12 C -0.054 4.054 13 O -0.084 6.084 14 C -0.050 4.050 15 N -0.196 5.196 16 N -0.388 5.388 17 C 0.320 3.680 18 O -0.392 6.392 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.243 0.757 38 H 0.247 0.753 39 H 0.270 0.730 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.631 1.488 -25.363 25.415 hybrid contribution 1.118 -2.048 0.854 2.485 sum 1.749 -0.560 -24.509 24.578 Atomic orbital electron populations 1.22182 0.95291 1.02027 1.02664 1.20880 0.93921 0.97852 0.83710 0.89332 1.22245 0.94214 1.02507 0.98388 1.21057 0.94494 0.80851 1.00109 0.88706 1.22185 1.02136 0.99894 0.97891 1.45789 1.16456 1.11346 1.62159 1.16711 0.82161 0.84371 0.77690 1.90850 1.51499 1.54703 1.43754 1.21768 0.93766 0.95881 1.08077 1.25364 1.00638 0.80486 0.98878 1.84455 1.37092 1.27473 1.59351 1.28110 0.79580 1.00090 0.97228 1.70721 1.31648 0.99129 1.18130 1.46075 1.69368 1.13714 1.09629 1.20273 0.76734 0.87201 0.83770 1.90691 1.48398 1.15734 1.84335 1.23535 1.03619 1.04827 0.98463 1.85363 1.86039 1.13024 0.98948 1.22878 1.50722 0.98159 0.96506 0.90960 1.24985 0.95124 0.95527 0.97927 1.70021 1.45609 1.13205 1.21545 0.86176 0.79043 0.80215 0.80118 1.20266 1.20773 1.19690 0.91628 0.91971 0.92544 0.89483 0.89751 0.91957 0.91385 0.92406 0.75703 0.75277 0.72953 0.77010 0.89318 0.89297 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.49 37.16 0.35 -1.37 16 2 C 0.14 1.60 2.52 -67.93 -0.17 1.43 16 3 H 0.09 1.24 7.05 -51.93 -0.37 0.88 16 4 C -0.14 -1.03 4.29 -26.73 -0.11 -1.14 16 5 C 0.14 1.34 2.52 -67.93 -0.17 1.17 16 6 H 0.09 1.15 7.05 -51.93 -0.37 0.78 16 7 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 8 N -0.71 -7.75 4.44 -54.88 -0.24 -7.99 16 9 C 0.61 8.26 7.78 -12.52 -0.10 8.16 16 10 O -0.53 -8.72 16.55 5.26 0.09 -8.63 16 11 C -0.08 -0.92 6.99 -83.02 -0.58 -1.50 16 12 C 0.02 0.21 11.94 29.96 0.36 0.57 16 13 O -0.20 -1.80 10.73 6.51 0.07 -1.73 16 14 C 0.18 1.39 13.19 51.96 0.69 2.08 16 15 N -0.47 -5.06 11.06 -11.48 -0.13 -5.19 16 16 N -0.73 -9.88 4.45 -53.81 -0.24 -10.12 16 17 C 0.53 10.26 7.82 -10.98 -0.09 10.17 16 18 O -0.52 -11.99 15.52 5.55 0.09 -11.91 16 19 C -0.15 -3.23 6.16 36.01 0.22 -3.01 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.53 -15.58 9.50 30.94 0.29 -15.29 16 22 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.62 13.22 55.49 0.73 -25.89 16 25 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.41 3.95 8.33 -40.82 -0.34 3.61 16 38 H 0.23 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.25 0.63 8.06 -52.48 -0.42 0.21 16 40 H 0.40 4.23 8.60 -40.82 -0.35 3.88 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -39.02 389.29 -6.10 -45.12 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.04 Total: 5.24 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 0.95 Total: 2.35 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.12 Total: -49.19 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.24 Total: -22.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.02 -6.10 -45.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735558420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.701 kcal (2) G-P(sol) polarization free energy of solvation -39.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds