Wall clock time and date at job start Sat Apr 11 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 H 1.09002 * 109.47319 * 55.00263 * 5 4 2 7 7 C 1.53007 * 109.47209 * 175.00208 * 5 4 2 8 8 N 1.46495 * 109.47416 * 295.00201 * 5 4 2 9 9 C 1.34775 * 120.00457 * 155.00022 * 8 5 4 10 10 O 1.21618 * 119.99637 * 359.97438 * 9 8 5 11 11 C 1.47419 * 120.00533 * 180.02562 * 9 8 5 12 12 C 1.36087 * 126.45277 * 180.02562 * 11 9 8 13 13 O 1.34254 * 106.95474 * 179.97438 * 12 11 9 14 14 C 1.34053 * 108.22332 * 359.97438 * 13 12 11 15 15 N 1.29930 * 109.24283 * 359.72285 * 14 13 12 16 16 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 17 17 C 1.34777 * 119.99828 * 274.72131 * 16 2 1 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 2 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 2 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46850 * 90.00589 * 25 23 21 27 27 H 1.48498 * 109.47329 * 210.00016 * 25 23 21 28 28 H 1.48499 * 109.47220 * 330.01003 * 25 23 21 29 29 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 33 33 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 34 34 H 1.09000 * 109.46920 * 180.02562 * 7 5 4 35 35 H 1.08997 * 109.46639 * 300.00346 * 7 5 4 36 36 H 1.09002 * 109.46936 * 59.99819 * 7 5 4 37 37 H 0.97009 * 120.00171 * 335.00071 * 8 5 4 38 38 H 1.08005 * 126.52532 * 0.02562 * 12 11 9 39 39 H 1.08003 * 125.37787 * 180.02562 * 14 13 12 40 40 H 0.97001 * 120.00384 * 95.00578 * 16 2 1 41 41 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 42 42 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 43 43 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 1 3.9954 -0.9922 -0.3868 7 6 4.0851 -1.4383 -2.4925 8 7 3.9479 0.7894 -1.4925 9 6 5.1611 1.2136 -1.0868 10 8 5.9376 0.4320 -0.5718 11 6 5.5464 2.6252 -1.2662 12 6 6.7305 3.1919 -0.9076 13 8 6.6633 4.4886 -1.2492 14 6 5.4648 4.7138 -1.8059 15 7 4.7878 3.6051 -1.8281 16 7 2.0183 -0.6906 1.1962 17 6 2.1523 -0.0169 2.3557 18 8 1.8638 1.1599 2.4102 19 6 2.6605 -0.7257 3.5847 20 16 2.7270 0.4388 4.9688 21 6 3.3357 -0.6251 6.2346 22 1 3.5447 -1.6616 6.0147 23 6 3.5475 -0.1307 7.5142 24 7 3.2932 1.1328 7.7821 25 14 4.1921 -1.2586 8.8564 26 1 5.6767 -1.2203 8.8645 27 1 3.6782 -0.8047 10.1736 28 1 3.7342 -2.6474 8.5982 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7516 -1.7715 -1.2056 33 1 1.6053 -0.2618 -2.1370 34 1 5.1715 -1.3617 -2.5381 35 1 3.8000 -2.4819 -2.3595 36 1 3.6545 -1.0593 -3.4194 37 1 3.3283 1.4129 -1.9029 38 1 7.5659 2.6934 -0.4384 39 1 5.1187 5.6655 -2.1814 40 1 2.2491 -1.6318 1.1526 41 1 1.9894 -1.5476 3.8337 42 1 3.6590 -1.1179 3.3911 43 1 3.4409 1.4781 8.6764 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735558420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:54 Heat of formation + Delta-G solvation = -93.355662 kcal Electronic energy + Delta-G solvation = -27140.739380 eV Core-core repulsion = 23119.389687 eV Total energy + Delta-G solvation = -4021.349693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.40416 -41.12980 -40.47372 -37.99852 -35.95192 -35.71300 -34.60427 -33.01946 -32.03463 -31.13584 -29.98785 -27.76687 -27.67187 -25.58658 -23.72913 -23.03677 -22.12292 -21.78969 -21.33125 -19.89986 -19.53933 -17.97652 -17.73867 -17.58761 -17.51213 -17.02031 -16.89720 -16.40401 -16.07717 -15.95609 -15.72880 -15.26155 -14.98040 -14.80391 -14.62791 -14.50379 -14.43444 -13.74123 -13.63459 -13.30382 -13.18801 -13.09370 -12.97228 -12.90463 -12.62120 -12.49393 -12.39432 -11.98136 -11.91246 -11.75732 -11.71593 -11.34478 -11.16083 -10.91360 -10.34529 -10.30774 -10.10080 -10.04000 -8.68815 -8.36467 -6.14795 0.07457 1.04962 1.25455 1.40908 1.45321 1.56375 1.62745 1.70647 2.11092 2.23676 2.25200 2.32275 2.97501 3.08883 3.30589 3.53891 3.77723 3.83911 3.88540 4.00211 4.13544 4.25777 4.36183 4.44833 4.46627 4.50077 4.50968 4.61030 4.71826 4.76356 4.83116 4.91409 5.06295 5.13359 5.17172 5.29222 5.34676 5.39510 5.43346 5.59657 6.17864 6.25764 6.52331 6.56191 7.04533 7.07212 7.27338 8.72983 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.003017 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.720029 B = 9278.716102 C =10737.030910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 H 0.058 0.942 4 C -0.119 4.119 5 C 0.133 3.867 6 H 0.067 0.933 7 C -0.154 4.154 8 N -0.697 5.697 9 C 0.595 3.405 10 O -0.572 6.572 11 C -0.106 4.106 12 C 0.019 3.981 13 O -0.199 6.199 14 C 0.197 3.803 15 N -0.494 5.494 16 N -0.708 5.708 17 C 0.534 3.466 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.150 6.150 21 C -0.548 4.548 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.268 1.268 27 H -0.275 1.275 28 H -0.258 1.258 29 H 0.027 0.973 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.037 0.963 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.414 0.586 38 H 0.244 0.756 39 H 0.304 0.696 40 H 0.413 0.587 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 -1.713 -27.512 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.034 3.966 3 H 0.077 0.923 4 C -0.157 4.157 5 C 0.030 3.970 6 H 0.085 0.915 7 C -0.212 4.212 8 N -0.348 5.348 9 C 0.381 3.619 10 O -0.452 6.452 11 C -0.225 4.225 12 C -0.055 4.055 13 O -0.084 6.084 14 C -0.032 4.032 15 N -0.223 5.223 16 N -0.362 5.362 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.282 4.282 20 S 0.077 5.923 21 C -0.696 4.696 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.200 1.200 28 H -0.181 1.181 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.056 0.944 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.250 0.750 38 H 0.260 0.740 39 H 0.318 0.682 40 H 0.250 0.750 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.100 -0.280 -27.228 27.230 hybrid contribution 1.230 -1.457 1.258 2.285 sum 1.329 -1.738 -25.970 26.062 Atomic orbital electron populations 1.22129 0.94103 1.03202 1.02109 1.21087 0.94762 0.96758 0.84036 0.92332 1.22225 0.92296 1.04111 0.97095 1.21202 0.95892 0.80185 0.99759 0.91467 1.22110 1.00551 1.00880 0.97692 1.45839 1.15657 1.12199 1.61075 1.17047 0.82568 0.84887 0.77362 1.90807 1.52725 1.55852 1.45837 1.21802 0.94970 0.95842 1.09870 1.25659 1.00576 0.80939 0.98373 1.84485 1.37740 1.26732 1.59423 1.29264 0.78397 1.00836 0.94692 1.70687 1.32392 0.99781 1.19489 1.45872 1.67362 1.14369 1.08570 1.20000 0.76695 0.86590 0.84756 1.90676 1.50858 1.17667 1.85139 1.23383 1.05028 1.03336 0.96474 1.85524 1.86441 1.17436 1.02882 1.23207 1.50957 0.98418 0.97017 0.90092 1.26137 0.95001 0.97240 1.00685 1.70184 1.46743 1.15468 1.22371 0.84949 0.78482 0.78209 0.76311 1.19359 1.20044 1.18143 0.95405 0.89357 0.90421 0.86388 0.86810 0.94392 0.89243 0.90706 0.74970 0.74032 0.68168 0.74960 0.87181 0.88152 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 71.98 0.68 -2.31 16 2 C 0.14 2.91 2.52 44.99 0.11 3.03 16 3 H 0.06 1.65 7.05 -2.39 -0.02 1.63 16 4 C -0.12 -1.42 4.29 30.59 0.13 -1.29 16 5 C 0.13 2.38 2.52 44.99 0.11 2.50 16 6 H 0.07 1.60 7.05 -2.39 -0.02 1.58 16 7 C -0.15 -2.15 9.48 71.98 0.68 -1.47 16 8 N -0.70 -15.25 4.44 -445.80 -1.98 -17.23 16 9 C 0.59 16.95 7.78 86.66 0.67 17.63 16 10 O -0.57 -19.83 16.55 -4.09 -0.07 -19.90 16 11 C -0.11 -2.69 6.99 40.41 0.28 -2.41 16 12 C 0.02 0.41 11.94 67.32 0.80 1.21 16 13 O -0.20 -3.46 10.73 0.38 0.00 -3.45 16 14 C 0.20 2.77 13.19 130.52 1.72 4.49 16 15 N -0.49 -10.57 11.06 -305.15 -3.37 -13.94 16 16 N -0.71 -18.34 4.45 -442.53 -1.97 -20.31 16 17 C 0.53 20.81 7.82 87.66 0.69 21.49 16 18 O -0.57 -27.34 15.52 -3.04 -0.05 -27.39 16 19 C -0.13 -5.54 6.16 71.24 0.44 -5.10 16 20 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 21 C -0.55 -32.41 9.50 67.96 0.65 -31.76 16 22 H 0.08 4.47 7.80 -2.91 -0.02 4.44 16 23 C 0.01 0.82 5.49 84.86 0.47 1.29 16 24 N -0.91 -57.21 13.22 21.65 0.29 -56.92 16 25 Si 1.00 44.69 29.55 68.60 2.03 46.72 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 28 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.41 7.84 8.33 -92.70 -0.77 7.07 16 38 H 0.24 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.30 0.54 8.06 -2.91 -0.02 0.52 16 40 H 0.41 7.91 8.60 -92.71 -0.80 7.11 16 41 H 0.11 4.16 8.14 -2.40 -0.02 4.14 16 42 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 43 H 0.27 15.77 8.31 -92.72 -0.77 14.99 16 Total: -1.00 -91.21 389.29 0.64 -90.56 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -0.52 Total: 24.42 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 7.44 Total: 7.29 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -7.04 Total: -108.41 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.11 Total: -50.74 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -91.21 0.64 -90.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735558420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.791 kcal (2) G-P(sol) polarization free energy of solvation -91.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds