Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35532 * 125.68088 * 2 1 4 4 C 1.35449 * 108.87355 * 180.30387 * 3 2 1 5 5 C 1.39837 * 107.86567 * 359.73227 * 4 3 2 6 6 C 1.37649 * 125.67647 * 179.84695 * 2 1 3 7 7 C 1.46675 * 126.23712 * 359.95889 * 6 2 1 8 8 O 1.21703 * 119.99784 * 357.74127 * 7 6 2 9 9 N 1.34777 * 120.00498 * 177.73991 * 7 6 2 10 10 C 1.46498 * 120.00344 * 175.23180 * 9 7 6 11 11 C 1.52998 * 109.47516 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46956 * 59.99545 * 11 10 9 13 13 O 1.42907 * 109.46772 * 300.00384 * 11 10 9 14 14 C 1.52992 * 109.47507 * 179.97438 * 11 10 9 15 15 N 1.46502 * 109.47467 * 184.99583 * 14 11 10 16 16 C 1.34777 * 120.00172 * 179.97438 * 15 14 11 17 17 O 1.21281 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99629 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.46750 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99833 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00291 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00169 * 180.02562 * 20 19 18 23 23 N 1.31639 * 119.99585 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00336 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46617 * 60.00051 * 24 22 20 26 26 H 1.48504 * 109.46819 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47059 * 299.99922 * 24 22 20 28 28 H 1.09000 * 109.47058 * 265.97093 * 1 2 3 29 29 H 1.08994 * 109.47276 * 25.97956 * 1 2 3 30 30 H 1.09006 * 109.46956 * 145.97882 * 1 2 3 31 31 H 1.08004 * 125.56247 * 0.06973 * 3 2 1 32 32 H 1.08000 * 126.06844 * 179.69063 * 4 3 2 33 33 H 1.07993 * 126.45648 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99950 * 355.23333 * 9 7 6 35 35 H 1.09005 * 109.46941 * 59.99676 * 10 9 7 36 36 H 1.09001 * 109.47049 * 300.00335 * 10 9 7 37 37 H 0.96707 * 113.99265 * 299.99422 * 13 11 10 38 38 H 1.09004 * 109.47038 * 304.99908 * 14 11 10 39 39 H 1.09007 * 109.47016 * 64.99576 * 14 11 10 40 40 H 0.96999 * 119.99565 * 0.02562 * 15 14 11 41 41 H 1.08994 * 109.47216 * 299.99709 * 18 16 15 42 42 H 1.09000 * 109.47313 * 60.00504 * 18 16 15 43 43 H 0.96997 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0068 5 6 3.5780 -0.6889 -0.0050 6 6 2.2678 -1.1182 0.0030 7 6 1.8124 -2.5124 0.0076 8 8 0.6224 -2.7637 0.0506 9 7 2.7118 -3.5153 -0.0359 10 6 2.2642 -4.9059 0.0740 11 6 3.4744 -5.8389 -0.0033 12 1 4.1604 -5.6124 0.8129 13 8 4.1419 -5.6505 -1.2528 14 6 3.0070 -7.2911 0.1120 15 7 4.1728 -8.1772 0.1580 16 6 4.0025 -9.5102 0.2601 17 8 2.8841 -9.9763 0.3134 18 6 5.2018 -10.4215 0.3080 19 16 4.6489 -12.1395 0.4458 20 6 6.2074 -12.9607 0.4801 21 1 7.1210 -12.3878 0.4211 22 6 6.2610 -14.3439 0.5819 23 7 5.1473 -15.0422 0.6534 24 14 7.9133 -15.2146 0.6175 25 1 8.6986 -14.7383 1.7844 26 1 7.6984 -16.6797 0.7308 27 1 8.6562 -14.9180 -0.6336 28 1 -0.3633 -0.0722 1.0251 29 1 -0.3633 0.9238 -0.4501 30 1 -0.3633 -0.8518 -0.5750 31 1 1.9082 2.1236 0.0011 32 1 4.4132 1.3611 -0.0132 33 1 4.4583 -1.3144 -0.0087 34 1 3.6554 -3.3164 -0.1399 35 1 1.5778 -5.1322 -0.7420 36 1 1.7554 -5.0496 1.0271 37 1 3.5899 -5.8346 -2.0252 38 1 2.4217 -7.4131 1.0235 39 1 2.3919 -7.5445 -0.7515 40 1 5.0673 -7.8043 0.1158 41 1 5.7871 -10.2999 -0.6034 42 1 5.8167 -10.1678 1.1715 43 1 5.1848 -16.0088 0.7249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738401010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -76.375259 kcal Electronic energy + Delta-G solvation = -25528.292035 eV Core-core repulsion = 21507.678668 eV Total energy + Delta-G solvation = -4020.613367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78943 -39.84403 -39.19059 -37.88936 -34.92064 -34.20884 -33.21545 -32.42948 -31.15983 -29.93085 -28.69444 -26.92295 -25.80175 -25.34679 -22.84313 -22.32728 -20.96107 -20.39093 -19.97970 -18.44344 -17.97804 -17.24983 -16.80588 -16.41948 -16.28924 -16.01241 -15.55734 -15.30190 -15.14246 -14.80350 -14.64437 -14.35562 -14.06550 -13.84012 -13.77009 -13.63535 -13.19063 -13.08145 -12.82849 -12.76962 -12.60626 -12.55874 -12.45149 -11.78035 -11.50942 -11.04950 -11.03773 -10.81256 -10.70946 -10.38699 -9.82862 -9.59846 -9.45698 -9.18777 -9.07012 -8.96759 -8.66254 -8.25006 -6.50759 -6.21770 -3.92671 1.04290 2.14861 2.30761 2.79469 2.98600 3.05371 3.06495 3.23690 3.27639 3.30971 3.65064 3.92553 4.20357 4.24976 4.29926 4.37125 4.50135 4.55224 4.58476 4.80395 4.94431 4.98350 5.10190 5.13407 5.14270 5.17167 5.25360 5.47546 5.60061 5.61661 5.72882 5.73740 5.88188 5.89861 6.13362 6.29488 6.51394 6.53421 6.74353 7.04301 7.13272 7.59107 7.65527 7.76381 8.34852 8.56430 9.23435 10.85601 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.036781 B = 0.001486 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.083771 B =18841.470637 C =19448.494389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.411 5.411 3 C 0.015 3.985 4 C -0.208 4.208 5 C -0.139 4.139 6 C -0.055 4.055 7 C 0.589 3.411 8 O -0.550 6.550 9 N -0.712 5.712 10 C 0.093 3.907 11 C 0.086 3.914 12 H 0.115 0.885 13 O -0.554 6.554 14 C 0.093 3.907 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.408 0.592 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.382 0.618 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.402 0.598 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.161 34.245 -2.206 34.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.084 5.084 3 C -0.121 4.121 4 C -0.232 4.232 5 C -0.165 4.165 6 C -0.169 4.169 7 C 0.377 3.623 8 O -0.429 6.429 9 N -0.364 5.364 10 C -0.032 4.032 11 C 0.026 3.974 12 H 0.132 0.868 13 O -0.360 6.360 14 C -0.032 4.032 15 N -0.389 5.389 16 C 0.318 3.682 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.186 0.814 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.244 0.756 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.230 0.770 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.237 0.763 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.906 33.199 -1.667 33.951 hybrid contribution 2.701 0.204 -0.381 2.735 sum -4.205 33.403 -2.048 33.729 Atomic orbital electron populations 1.22252 0.75976 1.04828 1.04261 1.43875 1.06894 1.04982 1.52612 1.22072 0.90758 0.91541 1.07727 1.20856 0.96077 0.95057 1.11167 1.21390 0.94401 0.95618 1.05100 1.19994 0.90525 0.87486 1.18877 1.16979 0.85521 0.83594 0.76173 1.90813 1.16066 1.84998 1.51068 1.45429 1.10904 1.05332 1.74732 1.21985 0.96986 0.80242 1.03978 1.22398 0.94083 0.92651 0.88249 0.86759 1.86593 1.42867 1.91448 1.15132 1.21812 0.89568 0.88223 1.03617 1.45846 1.09235 1.06216 1.77586 1.20340 0.91024 0.81720 0.75092 1.90711 1.25711 1.75198 1.47602 1.23525 0.98802 1.03003 1.05027 1.85393 1.11606 0.90261 1.96113 1.22832 0.92630 0.94300 1.58744 0.90940 1.24992 0.97671 0.96368 0.94500 1.70011 1.26595 1.07209 1.46486 0.86220 0.82267 0.78189 0.78798 1.19939 1.20807 1.19928 0.90455 0.89812 0.88216 0.81354 0.83873 0.83760 0.75562 0.90319 0.89813 0.76974 0.90317 0.90870 0.76301 0.89122 0.89171 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 10.44 59.85 0.62 1.03 16 2 N -0.41 -3.21 3.16 -120.24 -0.38 -3.59 16 3 C 0.01 0.09 11.37 -16.91 -0.19 -0.10 16 4 C -0.21 -1.36 10.81 -39.98 -0.43 -1.79 16 5 C -0.14 -1.01 10.35 -39.12 -0.40 -1.41 16 6 C -0.06 -0.49 6.89 -81.98 -0.56 -1.06 16 7 C 0.59 5.78 7.78 -12.85 -0.10 5.68 16 8 O -0.55 -6.95 14.80 5.19 0.08 -6.87 16 9 N -0.71 -5.13 5.43 -61.62 -0.33 -5.46 16 10 C 0.09 0.64 5.34 -4.04 -0.02 0.62 16 11 C 0.09 0.56 3.08 -26.74 -0.08 0.48 16 12 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 13 O -0.55 -3.72 13.03 -35.23 -0.46 -4.18 16 14 C 0.09 0.91 5.31 -4.05 -0.02 0.89 16 15 N -0.73 -9.03 5.50 -60.29 -0.33 -9.36 16 16 C 0.53 9.61 7.85 -10.98 -0.09 9.53 16 17 O -0.52 -11.51 15.86 5.56 0.09 -11.42 16 18 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.12 13.22 55.49 0.73 -25.38 16 24 Si 0.92 21.33 29.55 -169.99 -5.02 16.30 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.26 8.13 -51.93 -0.42 -0.16 16 30 H 0.10 0.76 6.62 -51.93 -0.34 0.41 16 31 H 0.17 0.50 8.06 -52.48 -0.42 0.08 16 32 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.14 0.74 7.45 -52.49 -0.39 0.35 16 34 H 0.41 2.27 7.26 -40.82 -0.30 1.98 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.38 1.81 9.05 45.56 0.41 2.22 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 40 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -38.17 387.16 -8.03 -46.19 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.16 Total: 3.67 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -0.86 Total: -1.90 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: -0.31 Total: -43.79 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.29 Total: -22.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.17 -8.03 -46.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738401010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.180 kcal (2) G-P(sol) polarization free energy of solvation -38.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds