Wall clock time and date at job start Sat Apr 11 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35532 * 125.68088 * 2 1 4 4 C 1.35449 * 108.87355 * 180.30387 * 3 2 1 5 5 C 1.39837 * 107.86567 * 359.73227 * 4 3 2 6 6 C 1.37649 * 125.67647 * 179.84695 * 2 1 3 7 7 C 1.46675 * 126.23712 * 359.95889 * 6 2 1 8 8 O 1.21703 * 119.99784 * 357.74127 * 7 6 2 9 9 N 1.34777 * 120.00498 * 177.73991 * 7 6 2 10 10 C 1.46498 * 120.00344 * 175.23180 * 9 7 6 11 11 C 1.52998 * 109.47516 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46956 * 59.99545 * 11 10 9 13 13 O 1.42907 * 109.46772 * 300.00384 * 11 10 9 14 14 C 1.52992 * 109.47507 * 179.97438 * 11 10 9 15 15 N 1.46502 * 109.47467 * 184.99583 * 14 11 10 16 16 C 1.34777 * 120.00172 * 179.97438 * 15 14 11 17 17 O 1.21281 * 119.99931 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99629 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.46750 * 179.97438 * 18 16 15 20 20 C 1.76194 * 99.99833 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00291 * 359.97438 * 20 19 18 22 22 C 1.38801 * 120.00169 * 180.02562 * 20 19 18 23 23 N 1.31639 * 119.99585 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00336 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46617 * 60.00051 * 24 22 20 26 26 H 1.48504 * 109.46819 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47059 * 299.99922 * 24 22 20 28 28 H 1.09000 * 109.47058 * 265.97093 * 1 2 3 29 29 H 1.08994 * 109.47276 * 25.97956 * 1 2 3 30 30 H 1.09006 * 109.46956 * 145.97882 * 1 2 3 31 31 H 1.08004 * 125.56247 * 0.06973 * 3 2 1 32 32 H 1.08000 * 126.06844 * 179.69063 * 4 3 2 33 33 H 1.07993 * 126.45648 * 180.02562 * 5 4 3 34 34 H 0.96996 * 119.99950 * 355.23333 * 9 7 6 35 35 H 1.09005 * 109.46941 * 59.99676 * 10 9 7 36 36 H 1.09001 * 109.47049 * 300.00335 * 10 9 7 37 37 H 0.96707 * 113.99265 * 299.99422 * 13 11 10 38 38 H 1.09004 * 109.47038 * 304.99908 * 14 11 10 39 39 H 1.09007 * 109.47016 * 64.99576 * 14 11 10 40 40 H 0.96999 * 119.99565 * 0.02562 * 15 14 11 41 41 H 1.08994 * 109.47216 * 299.99709 * 18 16 15 42 42 H 1.09000 * 109.47313 * 60.00504 * 18 16 15 43 43 H 0.96997 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5521 0.7093 -0.0068 5 6 3.5780 -0.6889 -0.0050 6 6 2.2678 -1.1182 0.0030 7 6 1.8124 -2.5124 0.0076 8 8 0.6224 -2.7637 0.0506 9 7 2.7118 -3.5153 -0.0359 10 6 2.2642 -4.9059 0.0740 11 6 3.4744 -5.8389 -0.0033 12 1 4.1604 -5.6124 0.8129 13 8 4.1419 -5.6505 -1.2528 14 6 3.0070 -7.2911 0.1120 15 7 4.1728 -8.1772 0.1580 16 6 4.0025 -9.5102 0.2601 17 8 2.8841 -9.9763 0.3134 18 6 5.2018 -10.4215 0.3080 19 16 4.6489 -12.1395 0.4458 20 6 6.2074 -12.9607 0.4801 21 1 7.1210 -12.3878 0.4211 22 6 6.2610 -14.3439 0.5819 23 7 5.1473 -15.0422 0.6534 24 14 7.9133 -15.2146 0.6175 25 1 8.6986 -14.7383 1.7844 26 1 7.6984 -16.6797 0.7308 27 1 8.6562 -14.9180 -0.6336 28 1 -0.3633 -0.0722 1.0251 29 1 -0.3633 0.9238 -0.4501 30 1 -0.3633 -0.8518 -0.5750 31 1 1.9082 2.1236 0.0011 32 1 4.4132 1.3611 -0.0132 33 1 4.4583 -1.3144 -0.0087 34 1 3.6554 -3.3164 -0.1399 35 1 1.5778 -5.1322 -0.7420 36 1 1.7554 -5.0496 1.0271 37 1 3.5899 -5.8346 -2.0252 38 1 2.4217 -7.4131 1.0235 39 1 2.3919 -7.5445 -0.7515 40 1 5.0673 -7.8043 0.1158 41 1 5.7871 -10.2999 -0.6034 42 1 5.8167 -10.1678 1.1715 43 1 5.1848 -16.0088 0.7249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738401010.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:09 Heat of formation + Delta-G solvation = -107.899121 kcal Electronic energy + Delta-G solvation = -25529.659012 eV Core-core repulsion = 21507.678668 eV Total energy + Delta-G solvation = -4021.980345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31036 -40.80407 -40.19405 -38.69946 -35.66898 -35.26092 -34.57283 -33.70898 -32.06553 -30.91786 -29.62810 -27.68709 -27.38490 -26.46568 -23.51152 -22.97233 -21.75350 -21.40159 -20.62047 -19.84278 -18.98884 -18.18849 -17.75667 -17.46306 -17.01670 -16.86960 -16.69564 -16.57150 -16.26426 -16.03140 -15.66722 -15.43294 -14.92959 -14.83157 -14.51101 -14.37013 -14.29254 -14.12708 -14.11045 -13.52961 -13.25644 -13.19766 -13.16049 -13.10231 -12.90133 -12.85104 -12.62343 -12.11713 -11.75532 -11.40667 -11.16415 -11.11946 -10.90134 -10.28014 -10.27187 -10.13731 -9.68842 -9.17824 -8.65955 -8.33679 -6.11929 0.45741 1.26905 1.44956 1.46577 1.55543 1.61214 1.65502 1.82310 2.17220 2.28703 2.35190 2.45790 3.00491 3.31434 3.37390 3.61138 3.64178 3.85024 3.96885 3.97619 4.06828 4.19487 4.30295 4.35728 4.40054 4.48376 4.53166 4.55483 4.64970 4.70860 4.71333 4.96984 5.17626 5.26201 5.27772 5.39921 5.42652 5.80837 6.02124 6.20496 6.30560 6.46047 6.49063 6.66602 7.07588 7.11584 7.24179 8.75245 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.036781 B = 0.001486 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.083771 B =18841.470637 C =19448.494389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.423 5.423 3 C 0.021 3.979 4 C -0.223 4.223 5 C -0.135 4.135 6 C -0.092 4.092 7 C 0.584 3.416 8 O -0.589 6.589 9 N -0.699 5.699 10 C 0.096 3.904 11 C 0.111 3.889 12 H 0.131 0.869 13 O -0.558 6.558 14 C 0.090 3.910 15 N -0.705 5.705 16 C 0.534 3.466 17 O -0.567 6.567 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.262 1.262 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.201 0.799 32 H 0.163 0.837 33 H 0.162 0.838 34 H 0.418 0.582 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.392 0.608 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.418 0.582 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 36.743 -2.395 36.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.096 5.096 3 C -0.115 4.115 4 C -0.246 4.246 5 C -0.162 4.162 6 C -0.205 4.205 7 C 0.373 3.627 8 O -0.471 6.471 9 N -0.351 5.351 10 C -0.029 4.029 11 C 0.050 3.950 12 H 0.149 0.851 13 O -0.365 6.365 14 C -0.035 4.035 15 N -0.360 5.360 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.696 4.696 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.186 1.186 26 H -0.205 1.205 27 H -0.186 1.186 28 H 0.094 0.906 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.218 0.782 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.256 0.744 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.242 0.758 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.256 0.744 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.312 35.751 -1.872 36.059 hybrid contribution 1.896 -0.375 -0.349 1.964 sum -2.416 35.376 -2.221 35.528 Atomic orbital electron populations 1.22288 0.75476 1.05427 1.04108 1.44122 1.07494 1.05213 1.52725 1.22702 0.90681 0.92456 1.05668 1.21219 0.97029 0.95016 1.11336 1.21727 0.94316 0.96450 1.03687 1.20079 0.91540 0.87369 1.21500 1.17261 0.85231 0.84506 0.75686 1.90787 1.17597 1.85596 1.53170 1.45308 1.11100 1.04915 1.73762 1.21915 0.97086 0.80290 1.03596 1.22143 0.93936 0.89998 0.88884 0.85150 1.86584 1.43221 1.91271 1.15462 1.21997 0.88565 0.89580 1.03361 1.45549 1.11044 1.04387 1.75001 1.20050 0.89549 0.83296 0.75159 1.90702 1.27105 1.76390 1.50352 1.23370 0.99815 0.98078 1.06827 1.85571 1.13742 0.96769 1.96484 1.23189 0.92802 0.94994 1.58615 0.89843 1.26127 1.02002 0.97248 0.93706 1.70182 1.29386 1.07534 1.47683 0.85005 0.76827 0.76677 0.79494 1.18644 1.20451 1.18646 0.90585 0.86789 0.90416 0.78229 0.81940 0.82022 0.74414 0.90838 0.90307 0.75839 0.90758 0.91233 0.74407 0.87203 0.87128 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 10.44 127.77 1.33 2.12 16 2 N -0.42 -6.21 3.16 -534.32 -1.69 -7.90 16 3 C 0.02 0.21 11.37 83.48 0.95 1.16 16 4 C -0.22 -2.40 10.81 22.01 0.24 -2.17 16 5 C -0.13 -1.74 10.35 22.57 0.23 -1.51 16 6 C -0.09 -1.59 6.89 40.35 0.28 -1.31 16 7 C 0.58 11.48 7.78 86.45 0.67 12.15 16 8 O -0.59 -15.48 14.80 -4.36 -0.06 -15.55 16 9 N -0.70 -9.39 5.43 -467.07 -2.53 -11.92 16 10 C 0.10 1.24 5.34 86.38 0.46 1.71 16 11 C 0.11 1.19 3.08 30.59 0.09 1.29 16 12 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 13 O -0.56 -6.00 13.03 -148.98 -1.94 -7.94 16 14 C 0.09 1.62 5.31 86.38 0.46 2.08 16 15 N -0.71 -15.94 5.50 -463.05 -2.55 -18.49 16 16 C 0.53 18.89 7.85 87.66 0.69 19.57 16 17 O -0.57 -25.64 15.86 -3.03 -0.05 -25.69 16 18 C -0.13 -5.01 6.16 71.24 0.44 -4.58 16 19 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 20 C -0.55 -31.18 9.50 67.95 0.65 -30.53 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.79 5.49 84.86 0.47 1.26 16 23 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 24 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 25 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.11 0.53 8.13 -2.39 -0.02 0.51 16 30 H 0.08 1.26 6.62 -2.38 -0.02 1.24 16 31 H 0.20 0.53 8.06 -2.91 -0.02 0.51 16 32 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.16 1.30 7.45 -2.91 -0.02 1.27 16 34 H 0.42 3.88 7.26 -92.71 -0.67 3.20 16 35 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.39 2.82 9.05 -74.05 -0.67 2.15 16 38 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.42 6.99 8.47 -92.71 -0.79 6.21 16 41 H 0.11 3.82 8.14 -2.40 -0.02 3.81 16 42 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -85.96 387.16 -1.78 -87.74 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -1.06 Total: 18.40 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 6.96 Total: 1.25 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -6.49 Total: -93.99 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -2.05 Total: -49.18 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -85.96 -1.78 -87.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738401010.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.161 kcal (2) G-P(sol) polarization free energy of solvation -85.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds