Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35530 * 125.67834 * 2 1 4 4 C 1.35448 * 108.87476 * 179.97438 * 3 2 1 5 5 C 1.39838 * 107.86338 * 359.74134 * 4 3 2 6 6 C 1.37653 * 125.68079 * 179.97438 * 2 1 3 7 7 C 1.46676 * 126.23012 * 0.02562 * 6 2 1 8 8 O 1.21700 * 120.00388 * 354.58051 * 7 6 2 9 9 N 1.34778 * 119.99852 * 174.84378 * 7 6 2 10 10 C 1.46503 * 119.99818 * 184.80625 * 9 7 6 11 11 H 1.08996 * 109.47450 * 35.00272 * 10 9 7 12 12 C 1.53002 * 109.46991 * 275.00154 * 10 9 7 13 13 O 1.42906 * 109.47355 * 295.00282 * 12 10 9 14 14 C 1.53001 * 109.46938 * 155.00567 * 10 9 7 15 15 N 1.46496 * 109.47139 * 305.00118 * 14 10 9 16 16 C 1.34782 * 120.00243 * 180.02562 * 15 14 10 17 17 O 1.21271 * 119.99763 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99928 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.46883 * 179.97438 * 18 16 15 20 20 C 1.76207 * 99.99802 * 179.97438 * 19 18 16 21 21 H 1.07992 * 119.99797 * 0.02562 * 20 19 18 22 22 C 1.38799 * 119.99740 * 179.97438 * 20 19 18 23 23 N 1.31628 * 119.99966 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00031 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47030 * 89.99734 * 24 22 20 26 26 H 1.48496 * 109.47028 * 209.99653 * 24 22 20 27 27 H 1.48499 * 109.47521 * 329.99849 * 24 22 20 28 28 H 1.09007 * 109.46946 * 273.86753 * 1 2 3 29 29 H 1.08994 * 109.47432 * 33.87296 * 1 2 3 30 30 H 1.09005 * 109.47318 * 153.87487 * 1 2 3 31 31 H 1.07999 * 125.56453 * 359.95362 * 3 2 1 32 32 H 1.07997 * 126.07054 * 180.02562 * 4 3 2 33 33 H 1.08000 * 126.45971 * 180.26425 * 5 4 3 34 34 H 0.96995 * 120.00090 * 4.81146 * 9 7 6 35 35 H 1.08995 * 109.47090 * 55.00304 * 12 10 9 36 36 H 1.09005 * 109.46902 * 175.00599 * 12 10 9 37 37 H 0.96697 * 113.99529 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47371 * 64.99692 * 14 10 9 39 39 H 1.08998 * 109.47175 * 184.99545 * 14 10 9 40 40 H 0.97001 * 120.00110 * 359.97438 * 15 14 10 41 41 H 1.09002 * 109.46864 * 299.99426 * 18 16 15 42 42 H 1.08998 * 109.47646 * 59.99257 * 18 16 15 43 43 H 0.96997 * 120.00472 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 0.0006 5 6 3.5779 -0.6888 0.0070 6 6 2.2679 -1.1181 0.0005 7 6 1.8124 -2.5124 0.0006 8 8 0.6261 -2.7651 0.0997 9 7 2.7083 -3.5139 -0.1038 10 6 2.2477 -4.9006 -0.2098 11 1 1.3213 -4.9330 -0.7832 12 6 2.0004 -5.4643 1.1910 13 8 3.2376 -5.5302 1.9032 14 6 3.3144 -5.7397 -0.9162 15 7 3.6374 -5.1310 -2.2090 16 6 4.5578 -5.7017 -3.0114 17 8 5.1188 -6.7189 -2.6630 18 6 4.8897 -5.0759 -4.3415 19 16 6.1517 -6.0684 -5.1772 20 6 6.3420 -5.1358 -6.6600 21 1 5.7563 -4.2418 -6.8145 22 6 7.2455 -5.5498 -7.6290 23 7 7.3874 -4.8534 -8.7369 24 14 8.2591 -7.0958 -7.3613 25 1 7.5244 -8.2687 -7.8997 26 1 9.5607 -6.9621 -8.0634 27 1 8.4978 -7.2859 -5.9080 28 1 -0.3633 0.0693 1.0254 29 1 -0.3634 0.8532 -0.5727 30 1 -0.3634 -0.9227 -0.4525 31 1 1.9082 2.1235 -0.0007 32 1 4.4131 1.3612 0.0011 33 1 4.4583 -1.3144 0.0130 34 1 3.6580 -3.3166 -0.1087 35 1 1.3071 -4.8158 1.7264 36 1 1.5740 -6.4642 1.1101 37 1 3.1562 -5.8796 2.8012 38 1 4.2121 -5.7804 -0.2994 39 1 2.9362 -6.7497 -1.0744 40 1 3.1884 -4.3177 -2.4879 41 1 3.9917 -5.0353 -4.9581 42 1 5.2679 -4.0659 -4.1836 43 1 8.0185 -5.1428 -9.4143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738864649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -70.940894 kcal Electronic energy + Delta-G solvation = -26784.258086 eV Core-core repulsion = 22763.880370 eV Total energy + Delta-G solvation = -4020.377716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.67912 -39.99437 -39.02780 -37.47586 -35.57759 -33.92061 -33.01020 -32.42835 -31.20232 -29.58351 -28.70943 -26.79397 -25.77831 -25.42071 -23.50595 -21.44037 -20.66210 -20.46280 -20.02214 -18.38156 -17.87769 -17.77736 -16.73480 -16.44528 -16.22894 -15.94303 -15.41351 -15.18441 -15.06374 -14.93159 -14.57187 -14.22194 -13.96241 -13.70594 -13.67062 -13.55070 -13.28530 -12.99676 -12.78253 -12.68689 -12.60752 -12.36306 -12.29587 -11.93282 -11.61531 -11.25503 -10.99972 -10.60910 -10.51170 -10.21470 -9.85251 -9.59691 -9.48055 -9.03906 -9.03570 -8.97493 -8.52517 -8.49233 -6.90742 -6.27865 -3.99563 1.15631 2.26779 2.45267 2.74742 2.95295 3.01002 3.07797 3.30780 3.34865 3.51519 3.65393 3.87424 4.30807 4.34118 4.47745 4.51372 4.67516 4.69147 4.77240 4.87756 4.96078 5.07455 5.09812 5.11224 5.13531 5.21254 5.27417 5.31636 5.48814 5.76536 5.78362 5.81221 5.90120 6.02449 6.05115 6.44052 6.46797 6.67756 6.88269 7.15616 7.24918 7.56490 7.83434 7.95258 8.43006 8.47128 9.18304 10.81439 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012072 B = 0.002584 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.852676 B =10833.300079 C =12461.005551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.411 5.411 3 C 0.015 3.985 4 C -0.206 4.206 5 C -0.135 4.135 6 C -0.058 4.058 7 C 0.593 3.407 8 O -0.554 6.554 9 N -0.707 5.707 10 C 0.143 3.857 11 H 0.108 0.892 12 C 0.067 3.933 13 O -0.567 6.567 14 C 0.116 3.884 15 N -0.738 5.738 16 C 0.532 3.468 17 O -0.517 6.517 18 C -0.124 4.124 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.169 0.831 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.410 0.590 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.381 0.619 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.399 0.601 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.851 9.191 23.430 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.084 5.084 3 C -0.120 4.120 4 C -0.230 4.230 5 C -0.161 4.161 6 C -0.171 4.171 7 C 0.382 3.618 8 O -0.434 6.434 9 N -0.359 5.359 10 C 0.038 3.962 11 H 0.125 0.875 12 C -0.013 4.013 13 O -0.372 6.372 14 C -0.008 4.008 15 N -0.394 5.394 16 C 0.318 3.682 17 O -0.391 6.391 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.234 0.766 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.848 7.520 23.321 28.651 hybrid contribution -0.232 1.045 -0.189 1.087 sum -15.080 8.566 23.132 28.912 Atomic orbital electron populations 1.22284 0.76143 1.05521 1.03647 1.43838 1.06781 1.04949 1.52864 1.22057 0.90754 0.91530 1.07672 1.20875 0.96106 0.95092 1.10927 1.21420 0.94456 0.95673 1.04571 1.19949 0.90530 0.87423 1.19223 1.16998 0.85424 0.83622 0.75719 1.90773 1.16403 1.84962 1.51246 1.45628 1.10415 1.05321 1.74538 1.21372 0.99109 0.80442 0.95319 0.87453 1.22520 0.86524 0.99916 0.92312 1.86484 1.31217 1.88341 1.31172 1.21512 0.98705 0.96410 0.84191 1.45963 1.43706 1.30335 1.19363 1.20268 0.78301 0.84255 0.85410 1.90706 1.50456 1.23746 1.74211 1.23280 1.04534 1.04056 0.95631 1.84779 1.48449 1.37515 1.20714 1.22319 1.28696 1.13981 1.01861 0.89399 1.24716 0.95736 0.96971 0.93906 1.69937 1.35582 1.38860 1.07365 0.86731 0.80290 0.83334 0.81474 1.19235 1.19958 1.15880 0.90695 0.89998 0.87763 0.81384 0.83822 0.83733 0.75433 0.92454 0.92201 0.77192 0.89534 0.90002 0.76643 0.88548 0.88412 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.64 59.85 0.64 1.09 16 2 N -0.41 -3.78 3.16 -120.24 -0.38 -4.16 16 3 C 0.02 0.12 11.38 -16.91 -0.19 -0.07 16 4 C -0.21 -1.78 10.81 -39.98 -0.43 -2.22 16 5 C -0.13 -1.27 10.35 -39.12 -0.41 -1.68 16 6 C -0.06 -0.60 6.88 -81.98 -0.56 -1.17 16 7 C 0.59 6.34 7.73 -12.85 -0.10 6.24 16 8 O -0.55 -6.96 14.31 5.19 0.07 -6.88 16 9 N -0.71 -6.34 4.45 -55.11 -0.25 -6.59 16 10 C 0.14 1.24 2.49 -67.93 -0.17 1.07 16 11 H 0.11 0.96 7.65 -51.93 -0.40 0.56 16 12 C 0.07 0.50 6.85 37.16 0.25 0.76 16 13 O -0.57 -4.41 12.64 -35.23 -0.45 -4.86 16 14 C 0.12 1.24 5.12 -4.04 -0.02 1.22 16 15 N -0.74 -9.14 5.39 -60.30 -0.32 -9.47 16 16 C 0.53 9.27 7.85 -10.98 -0.09 9.18 16 17 O -0.52 -10.97 15.86 5.57 0.09 -10.88 16 18 C -0.12 -2.40 6.16 36.00 0.22 -2.17 16 19 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 20 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 24 Si 0.86 21.82 27.74 -169.99 -4.72 17.11 16 25 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.23 -5.96 6.74 56.52 0.38 -5.58 16 28 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.90 6.22 -51.93 -0.32 0.57 16 31 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.14 7.45 -52.49 -0.39 0.75 16 34 H 0.41 3.47 7.50 -40.82 -0.31 3.16 16 35 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.38 1.45 9.12 45.56 0.42 1.86 16 38 H 0.09 1.05 7.39 -51.93 -0.38 0.66 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 4.20 8.14 -40.82 -0.33 3.87 16 41 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 42 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -37.31 381.68 -7.15 -44.46 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.10 Total: 6.73 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -0.64 Total: 0.24 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.18 Total: -46.11 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.28 Total: -22.63 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.31 -7.15 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738864649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.478 kcal (2) G-P(sol) polarization free energy of solvation -37.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds