Wall clock time and date at job start Sat Apr 11 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35533 * 125.67064 * 2 1 4 4 C 1.35452 * 108.86655 * 180.26012 * 3 2 1 5 5 C 1.39833 * 107.86942 * 359.76374 * 4 3 2 6 6 C 1.37645 * 125.68260 * 179.85886 * 2 1 3 7 7 C 1.46678 * 126.23419 * 0.02562 * 6 2 1 8 8 O 1.21700 * 119.99988 * 3.97182 * 7 6 2 9 9 N 1.34776 * 120.00348 * 183.97820 * 7 6 2 10 10 C 1.46498 * 120.00202 * 174.38409 * 9 7 6 11 11 H 1.09009 * 109.47347 * 324.99810 * 10 9 7 12 12 C 1.52999 * 109.47328 * 84.99697 * 10 9 7 13 13 O 1.42902 * 109.46913 * 65.00200 * 12 10 9 14 14 C 1.52998 * 109.47340 * 205.00011 * 10 9 7 15 15 N 1.46498 * 109.47033 * 54.99786 * 14 10 9 16 16 C 1.34780 * 120.00011 * 180.02562 * 15 14 10 17 17 O 1.21274 * 120.00095 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99813 * 179.97438 * 16 15 14 19 19 S 1.81007 * 109.46667 * 179.97438 * 18 16 15 20 20 C 1.76210 * 99.99809 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99786 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00071 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00092 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00224 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46883 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47278 * 119.99629 * 24 22 20 27 27 H 1.48499 * 109.47281 * 240.00210 * 24 22 20 28 28 H 1.08994 * 109.47379 * 264.35711 * 1 2 3 29 29 H 1.08993 * 109.47316 * 24.36488 * 1 2 3 30 30 H 1.09009 * 109.46641 * 144.36102 * 1 2 3 31 31 H 1.07999 * 125.57014 * 0.06114 * 3 2 1 32 32 H 1.08007 * 126.07122 * 179.74196 * 4 3 2 33 33 H 1.07999 * 126.46282 * 180.02562 * 5 4 3 34 34 H 0.96994 * 119.99853 * 354.38421 * 9 7 6 35 35 H 1.08998 * 109.46990 * 305.00120 * 12 10 9 36 36 H 1.09002 * 109.47187 * 185.00342 * 12 10 9 37 37 H 0.96695 * 114.00098 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.47201 * 174.99786 * 14 10 9 39 39 H 1.09004 * 109.46879 * 295.00251 * 14 10 9 40 40 H 0.97003 * 120.00392 * 0.02562 * 15 14 10 41 41 H 1.08998 * 109.47284 * 299.99794 * 18 16 15 42 42 H 1.09001 * 109.47385 * 60.00118 * 18 16 15 43 43 H 0.96999 * 120.00155 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5520 0.7095 -0.0058 5 6 3.5781 -0.6886 -0.0041 6 6 2.2679 -1.1180 0.0028 7 6 1.8126 -2.5124 0.0057 8 8 0.6243 -2.7646 -0.0672 9 7 2.7102 -3.5142 0.0892 10 6 2.2518 -4.8998 0.2161 11 1 1.3425 -4.9282 0.8166 12 6 1.9630 -5.4709 -1.1736 13 8 3.1787 -5.5420 -1.9214 14 6 3.3379 -5.7362 0.8956 15 7 3.6991 -5.1209 2.1751 16 6 4.6427 -5.6877 2.9528 17 8 5.1924 -6.7073 2.5937 18 6 5.0147 -5.0543 4.2687 19 16 6.2995 -6.0440 5.0727 20 6 6.5351 -5.1028 6.5436 21 1 5.9549 -4.2073 6.7104 22 6 7.4662 -5.5123 7.4879 23 7 8.1730 -6.6040 7.2848 24 14 7.7165 -4.5142 9.0469 25 1 6.8068 -3.3404 9.0345 26 1 7.4172 -5.3604 10.2298 27 1 9.1246 -4.0478 9.1154 28 1 -0.3634 -0.1010 1.0226 29 1 -0.3633 0.9361 -0.4239 30 1 -0.3633 -0.8353 -0.5989 31 1 1.9081 2.1237 0.0009 32 1 4.4132 1.3613 -0.0112 33 1 4.4584 -1.3142 -0.0072 34 1 3.6598 -3.3179 0.0652 35 1 1.2548 -4.8245 -1.6921 36 1 1.5382 -6.4699 -1.0749 37 1 3.0708 -5.8954 -2.8149 38 1 2.9636 -6.7449 1.0704 39 1 4.2171 -5.7811 0.2529 40 1 3.2592 -4.3055 2.4626 41 1 5.3888 -4.0457 4.0936 42 1 4.1357 -5.0093 4.9117 43 1 8.8240 -6.8900 7.9446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738864650.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:19 Heat of formation + Delta-G solvation = -71.354269 kcal Electronic energy + Delta-G solvation = -26747.627169 eV Core-core repulsion = 22727.231528 eV Total energy + Delta-G solvation = -4020.395641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.66725 -39.94165 -38.92541 -37.42806 -35.51850 -33.85322 -32.99173 -32.41551 -31.14382 -29.48539 -28.64896 -26.79316 -25.72144 -25.26662 -23.47683 -21.40590 -20.64399 -20.34511 -19.99158 -18.35807 -17.84031 -17.75145 -16.69179 -16.33447 -16.19032 -15.91579 -15.34485 -15.09112 -14.99771 -14.79287 -14.60353 -14.13995 -13.94666 -13.71347 -13.68829 -13.54415 -13.17021 -12.91446 -12.65447 -12.60836 -12.56485 -12.31715 -12.28450 -11.81618 -11.53716 -11.05936 -11.00512 -10.74657 -10.48677 -10.18922 -9.79638 -9.53098 -9.38026 -9.06667 -9.03229 -8.91014 -8.51826 -8.21791 -6.48430 -6.20543 -3.90811 1.16881 2.28350 2.45844 2.95027 3.06601 3.10452 3.11800 3.22710 3.29392 3.34190 3.71232 3.91565 4.21606 4.35588 4.47088 4.52550 4.68781 4.74545 4.90753 5.00103 5.10279 5.10933 5.14580 5.14886 5.15242 5.27122 5.30486 5.50394 5.65365 5.78825 5.87684 5.90164 5.92228 6.08748 6.15955 6.44958 6.56775 6.68074 6.88606 7.18850 7.29020 7.61340 7.67732 7.86268 8.36921 8.60656 9.25062 10.86956 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.002603 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.314451 B =10756.236207 C =12662.054483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.412 5.412 3 C 0.015 3.985 4 C -0.207 4.207 5 C -0.134 4.134 6 C -0.058 4.058 7 C 0.593 3.407 8 O -0.554 6.554 9 N -0.707 5.707 10 C 0.143 3.857 11 H 0.107 0.893 12 C 0.067 3.933 13 O -0.566 6.566 14 C 0.116 3.884 15 N -0.740 5.740 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.169 0.831 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.410 0.590 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.381 0.619 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.489 13.021 -19.835 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.085 5.085 3 C -0.121 4.121 4 C -0.230 4.230 5 C -0.161 4.161 6 C -0.171 4.171 7 C 0.382 3.618 8 O -0.434 6.434 9 N -0.359 5.359 10 C 0.038 3.962 11 H 0.125 0.875 12 C -0.013 4.013 13 O -0.372 6.372 14 C -0.008 4.008 15 N -0.396 5.396 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.186 0.814 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.443 11.196 -19.845 28.099 hybrid contribution -0.538 2.190 1.043 2.484 sum -16.980 13.385 -18.803 28.654 Atomic orbital electron populations 1.22237 0.76139 1.04663 1.04248 1.43841 1.06775 1.04973 1.52882 1.22059 0.90762 0.91486 1.07757 1.20873 0.96091 0.95100 1.10978 1.21430 0.94485 0.95663 1.04530 1.19961 0.90507 0.87442 1.19173 1.16995 0.85469 0.83609 0.75746 1.90779 1.16269 1.85016 1.51362 1.45625 1.10380 1.05405 1.74442 1.21374 0.98974 0.80436 0.95436 0.87518 1.22517 0.86928 0.99874 0.91938 1.86487 1.31984 1.88130 1.30578 1.21499 0.98154 0.96325 0.84859 1.46005 1.42516 1.30120 1.20952 1.20298 0.78255 0.84318 0.85244 1.90709 1.51674 1.23582 1.72920 1.23533 1.05836 1.04762 0.96284 1.85394 1.43555 1.33952 1.20417 1.22910 1.26601 1.13262 1.05476 0.90889 1.24991 0.94842 0.95343 0.98439 1.70027 1.22914 1.22058 1.35313 0.86117 0.78169 0.79638 0.81573 1.19617 1.20591 1.20562 0.90553 0.89907 0.88236 0.81400 0.83841 0.83706 0.75437 0.92507 0.92207 0.77220 0.90050 0.89583 0.76816 0.89182 0.89284 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.47 59.85 0.63 1.10 16 2 N -0.41 -3.79 3.16 -120.24 -0.38 -4.18 16 3 C 0.01 0.12 11.37 -16.91 -0.19 -0.08 16 4 C -0.21 -1.80 10.81 -39.98 -0.43 -2.23 16 5 C -0.13 -1.29 10.36 -39.12 -0.41 -1.69 16 6 C -0.06 -0.61 6.89 -81.98 -0.56 -1.17 16 7 C 0.59 6.48 7.73 -12.85 -0.10 6.38 16 8 O -0.55 -7.09 14.41 5.19 0.07 -7.02 16 9 N -0.71 -6.61 4.45 -55.11 -0.25 -6.86 16 10 C 0.14 1.31 2.48 -67.93 -0.17 1.15 16 11 H 0.11 1.00 7.66 -51.92 -0.40 0.60 16 12 C 0.07 0.53 6.85 37.16 0.25 0.79 16 13 O -0.57 -4.65 12.64 -35.23 -0.45 -5.10 16 14 C 0.12 1.32 5.12 -4.04 -0.02 1.30 16 15 N -0.74 -9.75 5.39 -60.30 -0.32 -10.08 16 16 C 0.53 9.85 7.85 -10.98 -0.09 9.77 16 17 O -0.51 -11.59 15.86 5.56 0.09 -11.50 16 18 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 24 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.10 0.83 6.57 -51.92 -0.34 0.48 16 31 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 33 H 0.15 1.17 7.45 -52.49 -0.39 0.78 16 34 H 0.41 3.64 7.50 -40.82 -0.31 3.34 16 35 H 0.06 0.48 8.05 -51.93 -0.42 0.07 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.38 1.58 9.12 45.56 0.42 2.00 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.10 7.39 -51.93 -0.38 0.72 16 40 H 0.40 4.45 8.14 -40.82 -0.33 4.12 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 384.59 15.07 5.80 5.80 Total: -1.00 -37.70 384.59 -7.69 -45.39 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.08 Total: 6.96 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.67 Total: -0.54 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.22 Total: -46.61 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.28 Total: -23.62 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.70 -7.69 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738864650.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.966 kcal (2) G-P(sol) polarization free energy of solvation -37.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds