Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47293 * 2 1 4 4 C 1.46498 * 119.99987 * 266.71680 * 3 2 1 5 5 C 1.52999 * 109.47351 * 270.00294 * 4 3 2 6 6 N 1.46498 * 109.47351 * 180.02562 * 5 4 3 7 7 C 1.34771 * 120.00061 * 179.97438 * 6 5 4 8 8 O 1.21285 * 120.00507 * 0.02562 * 7 6 5 9 9 C 1.50708 * 120.00090 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.47077 * 180.02562 * 9 7 6 11 11 C 1.76205 * 99.99670 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00270 * 359.97438 * 11 10 9 13 13 C 1.38797 * 119.99643 * 180.02562 * 11 10 9 14 14 N 1.31626 * 120.00412 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99765 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47194 * 59.99438 * 15 13 11 17 17 H 1.48500 * 109.47143 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46961 * 299.99748 * 15 13 11 19 19 C 1.34771 * 120.00020 * 86.72194 * 3 2 1 20 20 O 1.21578 * 120.00365 * 174.68963 * 19 3 2 21 21 C 1.47522 * 119.99908 * 354.40585 * 19 3 2 22 22 C 1.36817 * 126.94139 * 174.47068 * 21 19 3 23 23 C 1.41271 * 103.84621 * 179.97438 * 22 21 19 24 24 C 1.50687 * 126.70616 * 180.08362 * 23 22 21 25 25 N 1.30133 * 106.58556 * 0.33574 * 23 22 21 26 26 O 1.20888 * 111.98285 * 359.78252 * 25 23 22 27 27 H 1.08997 * 109.47022 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46601 * 299.99802 * 1 2 3 29 29 H 1.08994 * 109.47014 * 59.99873 * 1 2 3 30 30 H 1.09003 * 109.46946 * 239.99970 * 2 1 3 31 31 H 1.08998 * 109.47397 * 120.00424 * 2 1 3 32 32 H 1.09003 * 109.47279 * 30.00260 * 4 3 2 33 33 H 1.08998 * 109.46804 * 149.99954 * 4 3 2 34 34 H 1.09003 * 109.46901 * 300.00197 * 5 4 3 35 35 H 1.08998 * 109.47445 * 60.00052 * 5 4 3 36 36 H 0.97000 * 119.99796 * 0.02562 * 6 5 4 37 37 H 1.08994 * 109.47283 * 300.00795 * 9 7 6 38 38 H 1.08998 * 109.46684 * 60.00372 * 9 7 6 39 39 H 0.97000 * 120.00596 * 179.97438 * 14 13 11 40 40 H 1.08001 * 128.07968 * 0.02562 * 22 21 19 41 41 H 1.08998 * 109.47288 * 270.27549 * 24 23 22 42 42 H 1.09002 * 109.47599 * 30.27795 * 24 23 22 43 43 H 1.09004 * 109.47390 * 150.27311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3311 2.0475 -1.2666 5 6 3.7977 1.7994 -1.6251 6 7 4.1105 2.4663 -2.8914 7 6 5.3531 2.3848 -3.4069 8 8 6.2123 1.7591 -2.8227 9 6 5.6748 3.0704 -4.7099 10 16 7.4098 2.7769 -5.1337 11 6 7.5080 3.6647 -6.6526 12 1 6.6368 4.1735 -7.0381 13 6 8.7047 3.7092 -7.3543 14 7 9.7664 3.0887 -6.8848 15 14 8.8091 4.6510 -8.9642 16 1 8.4803 6.0792 -8.7244 17 1 10.1857 4.5454 -9.5111 18 1 7.8443 4.0775 -9.9365 19 6 2.1801 2.0387 1.1652 20 8 2.6757 3.1489 1.1731 21 6 1.7500 1.4140 2.4306 22 6 1.9398 1.9019 3.6946 23 6 1.3428 0.9282 4.5260 24 6 1.2590 0.9572 6.0303 25 7 0.8841 -0.0013 3.7392 26 8 1.0975 0.2452 2.5751 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6921 1.6487 -2.0545 33 1 2.1579 3.1190 -1.1659 34 1 4.4367 2.1983 -0.8372 35 1 3.9709 0.7280 -1.7258 36 1 3.4235 2.9671 -3.3584 37 1 5.0361 2.6714 -5.4978 38 1 5.5012 4.1418 -4.6092 39 1 10.6027 3.1195 -7.3753 40 1 2.4306 2.8181 3.9883 41 1 2.1377 0.4697 6.4526 42 1 1.2178 1.9914 6.3721 43 1 0.3608 0.4315 6.3544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758990325.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -6.481369 kcal Electronic energy + Delta-G solvation = -26238.635392 eV Core-core repulsion = 22221.052851 eV Total energy + Delta-G solvation = -4017.582541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.49557 -40.47582 -39.09052 -36.93347 -35.34796 -34.72388 -32.61527 -32.42018 -31.49960 -29.97618 -29.21144 -28.13369 -25.50698 -24.86755 -23.95113 -23.38418 -22.26843 -20.53354 -19.81870 -18.42198 -18.05203 -17.84001 -17.02353 -16.80636 -16.31558 -15.95518 -15.42259 -15.14084 -14.81529 -14.79046 -14.53299 -14.10446 -14.00834 -13.90490 -13.81270 -13.52299 -13.34371 -13.22565 -13.09952 -12.57975 -12.42257 -12.32862 -12.13719 -11.84982 -11.62911 -11.43130 -11.03894 -11.03011 -10.78009 -10.74008 -10.55477 -10.17957 -9.82651 -9.50471 -9.26778 -9.05796 -8.92790 -8.23292 -6.49306 -6.20602 -3.91417 0.33015 1.55851 1.98906 2.45260 2.58458 3.08538 3.09667 3.24264 3.28640 3.33401 3.57418 3.72303 3.81461 4.21297 4.28090 4.46080 4.54937 4.56227 4.66674 4.80298 4.82668 4.95740 4.96704 5.09206 5.11174 5.14418 5.17285 5.21720 5.28602 5.39154 5.54049 5.60038 5.62385 5.75671 5.76942 5.89708 5.99542 6.14225 6.55438 6.65673 7.36445 7.59966 7.64260 7.66810 8.35809 8.59709 9.24460 10.86748 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.001711 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.790656 B =16364.122840 C =16727.262927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.596 5.596 4 C 0.107 3.893 5 C 0.106 3.894 6 N -0.737 5.737 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.604 3.396 20 O -0.502 6.502 21 C -0.082 4.082 22 C -0.148 4.148 23 C 0.011 3.989 24 C -0.077 4.077 25 N -0.349 5.349 26 O 0.121 5.879 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.184 0.816 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.855 -5.093 20.758 32.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.026 4.026 3 N -0.329 5.329 4 C -0.015 4.015 5 C -0.019 4.019 6 N -0.392 5.392 7 C 0.319 3.681 8 O -0.390 6.390 9 C -0.303 4.303 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.091 0.909 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C 0.389 3.611 20 O -0.377 6.377 21 C -0.148 4.148 22 C -0.171 4.171 23 C -0.146 4.146 24 C -0.135 4.135 25 N -0.051 5.051 26 O 0.049 5.951 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.202 0.798 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.586 -6.738 21.940 32.201 hybrid contribution -0.881 2.180 -1.841 2.986 sum -23.467 -4.559 20.099 31.233 Atomic orbital electron populations 1.22194 0.94913 1.03038 1.02466 1.21878 0.95274 0.81016 1.04404 1.47734 1.64687 1.14962 1.05485 1.21704 0.95764 0.99640 0.84436 1.21566 0.95101 0.98307 0.86969 1.45819 1.12915 1.56276 1.24230 1.20314 0.81213 0.80177 0.86374 1.90712 1.46311 1.40817 1.61118 1.23527 1.07635 1.02983 0.96199 1.85415 1.00212 1.69572 1.28154 1.22831 0.99677 1.37970 1.07999 0.90945 1.24989 0.94684 0.95543 0.98330 1.70005 1.01096 1.40551 1.38634 0.86224 0.77406 0.79950 0.81911 1.19938 1.20816 1.19945 1.16642 0.78697 0.84678 0.81076 1.90920 1.42937 1.18544 1.85260 1.24114 1.03502 0.89965 0.97201 1.22918 1.01929 1.02190 0.90031 1.23668 0.99813 0.91692 0.99447 1.20228 1.03882 1.04133 0.85235 1.73722 1.18892 1.22734 0.89730 1.85164 1.55864 1.32653 1.21450 0.90786 0.92321 0.92072 0.88884 0.89512 0.88991 0.88721 0.91020 0.91350 0.76738 0.89139 0.89111 0.92125 0.79829 0.89730 0.89597 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 9.69 37.16 0.36 -0.50 16 2 C 0.10 0.58 5.67 -4.04 -0.02 0.56 16 3 N -0.60 -4.90 2.48 -174.93 -0.43 -5.33 16 4 C 0.11 0.86 5.47 -4.04 -0.02 0.83 16 5 C 0.11 1.23 6.00 -4.04 -0.02 1.21 16 6 N -0.74 -9.51 5.56 -60.29 -0.33 -9.85 16 7 C 0.53 9.93 7.85 -10.98 -0.09 9.84 16 8 O -0.52 -11.87 15.86 5.55 0.09 -11.78 16 9 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 15 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.60 6.23 7.64 -12.48 -0.10 6.14 16 20 O -0.50 -6.72 16.55 5.30 0.09 -6.63 16 21 C -0.08 -0.75 6.65 -36.31 -0.24 -0.99 16 22 C -0.15 -1.20 10.92 -38.94 -0.43 -1.63 16 23 C 0.01 0.09 7.31 -82.17 -0.60 -0.51 16 24 C -0.08 -0.33 10.47 36.00 0.38 0.04 16 25 N -0.35 -3.21 12.04 33.52 0.40 -2.80 16 26 O 0.12 1.04 6.49 15.56 0.10 1.15 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.45 8.05 -51.93 -0.42 0.04 16 31 H 0.09 0.55 5.84 -51.93 -0.30 0.25 16 32 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 33 H 0.09 0.80 7.50 -51.93 -0.39 0.41 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.40 3.75 8.47 -40.82 -0.35 3.41 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 384.41 15.07 5.79 5.79 Total: -1.00 -37.28 384.41 -7.15 -44.43 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.99 Total: -1.17 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.36 Total: -0.83 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.37 Total: -43.47 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.28 Total: -17.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.28 -7.15 -44.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758990325.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.947 kcal (2) G-P(sol) polarization free energy of solvation -37.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds