Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35536 * 125.67938 * 2 1 4 4 C 1.35452 * 108.87232 * 180.30745 * 3 2 1 5 5 S 1.76191 * 126.06710 * 179.76923 * 4 3 2 6 6 N 1.65604 * 107.21733 * 269.95401 * 5 4 3 7 7 O 1.42101 * 106.40564 * 23.49377 * 5 4 3 8 8 O 1.42102 * 106.40173 * 156.41996 * 5 4 3 9 9 C 1.39841 * 107.86342 * 359.73069 * 4 3 2 10 10 C 1.37653 * 125.67661 * 179.84851 * 2 1 3 11 11 C 1.46677 * 126.23292 * 359.96241 * 10 2 1 12 12 O 1.21696 * 120.00394 * 25.66932 * 11 10 2 13 13 N 1.34774 * 119.99920 * 205.66719 * 11 10 2 14 14 C 1.46934 * 120.62991 * 0.91554 * 13 11 10 15 15 C 1.53622 * 108.54056 * 126.36574 * 14 13 11 16 16 C 1.53043 * 109.24041 * 54.86010 * 15 14 13 17 17 C 1.50708 * 109.44964 * 178.49443 * 16 15 14 18 18 H 1.08001 * 119.99476 * 120.05755 * 17 16 15 19 19 C 1.37877 * 119.99883 * 300.06167 * 17 16 15 20 20 N 1.31510 * 119.99690 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99940 * 0.02562 * 19 17 16 22 22 H 1.48493 * 109.47180 * 90.00135 * 21 19 17 23 23 H 1.48504 * 109.46610 * 210.00098 * 21 19 17 24 24 H 1.48499 * 109.46986 * 329.99675 * 21 19 17 25 25 C 1.53039 * 109.53890 * 298.50834 * 16 15 14 26 26 C 1.46921 * 120.63284 * 181.19310 * 13 11 10 27 27 H 1.09000 * 109.46887 * 264.59172 * 1 2 3 28 28 H 1.08997 * 109.47020 * 24.59234 * 1 2 3 29 29 H 1.09004 * 109.47472 * 144.59333 * 1 2 3 30 30 H 1.08003 * 125.55884 * 0.02562 * 3 2 1 31 31 H 0.97003 * 120.00087 * 0.02562 * 6 5 4 32 32 H 0.97001 * 119.99809 * 180.02562 * 6 5 4 33 33 H 1.07995 * 126.45644 * 180.02562 * 9 4 3 34 34 H 1.08996 * 109.58849 * 246.20311 * 14 13 11 35 35 H 1.08996 * 109.58322 * 6.62849 * 14 13 11 36 36 H 1.08997 * 109.64134 * 294.86546 * 15 14 13 37 37 H 1.09001 * 109.43241 * 174.72487 * 15 14 13 38 38 H 1.08999 * 109.45902 * 58.52895 * 16 15 14 39 39 H 0.97006 * 119.99842 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.49534 * 301.41182 * 25 16 15 41 41 H 1.08997 * 109.52683 * 181.33739 * 25 16 15 42 42 H 1.09006 * 109.58720 * 353.38173 * 26 13 11 43 43 H 1.09007 * 109.58561 * 113.65881 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7093 -0.0069 5 16 4.9569 1.7727 -0.0154 6 7 5.3398 2.0664 -1.5996 7 8 4.5254 3.0121 0.5295 8 8 6.0339 1.0192 0.5245 9 6 3.5780 -0.6889 -0.0051 10 6 2.2678 -1.1182 0.0030 11 6 1.8124 -2.5124 0.0074 12 8 0.7202 -2.7973 -0.4477 13 7 2.6034 -3.4781 0.5155 14 6 3.9161 -3.1471 1.0866 15 6 3.9894 -3.7233 2.5088 16 6 3.6847 -5.2223 2.4619 17 6 3.7916 -5.7998 3.8499 18 1 2.9347 -6.2743 4.3047 19 6 4.9833 -5.7221 4.5389 20 7 5.0767 -6.2264 5.7499 21 14 6.4652 -4.9005 3.7524 22 1 6.4642 -3.4536 4.0863 23 1 7.7095 -5.5265 4.2673 24 1 6.3999 -5.0685 2.2784 25 6 2.2675 -5.4401 1.9269 26 6 2.1721 -4.8826 0.5033 27 1 -0.3633 -0.0969 1.0231 28 1 -0.3633 0.9344 -0.4277 29 1 -0.3634 -0.8376 -0.5954 30 1 1.9082 2.1236 0.0004 31 1 4.8107 1.6681 -2.3083 32 1 6.0931 2.6368 -1.8188 33 1 4.4583 -1.3145 -0.0089 34 1 4.7029 -3.5837 0.4714 35 1 4.0363 -2.0644 1.1229 36 1 3.2590 -3.2233 3.1448 37 1 4.9902 -3.5680 2.9118 38 1 4.4005 -5.7181 1.8063 39 1 5.9151 -6.1715 6.2349 40 1 1.5532 -4.9239 2.5684 41 1 2.0420 -6.5064 1.9160 42 1 1.1413 -4.9453 0.1545 43 1 2.8181 -5.4574 -0.1604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771648300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -39.711134 kcal Electronic energy + Delta-G solvation = -28541.478962 eV Core-core repulsion = 24522.455470 eV Total energy + Delta-G solvation = -4019.023492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.93911 -39.52491 -37.17102 -37.14264 -35.87092 -34.05901 -33.38139 -33.16947 -31.75998 -30.96990 -29.43472 -27.21493 -26.62192 -23.76739 -23.03660 -21.89308 -21.65556 -20.21325 -19.42129 -19.06816 -17.72271 -17.45671 -17.00714 -16.77688 -16.47443 -15.92717 -15.79375 -15.43086 -15.17654 -14.86208 -14.62801 -14.12734 -13.66760 -13.62244 -13.30262 -12.99331 -12.83337 -12.81404 -12.63923 -12.38968 -12.26228 -12.15517 -12.05431 -12.02909 -11.61826 -11.37195 -10.99885 -10.79955 -10.68783 -10.24209 -10.19329 -9.88179 -9.76519 -9.58386 -9.33926 -9.10988 -8.74445 -8.55645 -8.28336 -6.09781 -4.09779 0.35510 1.21480 1.64279 2.21240 3.05531 3.18070 3.23794 3.28091 3.35768 3.39943 3.60081 4.21301 4.36656 4.38633 4.49876 4.62238 4.89923 4.99500 5.15496 5.18962 5.27091 5.35402 5.47921 5.51523 5.61225 5.72518 5.76684 5.84926 5.91271 6.07965 6.15761 6.24240 6.36851 6.54348 6.60979 6.65784 6.70792 6.78624 6.82343 7.13346 7.44127 7.50926 7.72018 8.13100 8.48568 8.93667 9.52158 11.03407 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011463 B = 0.004143 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.125914 B = 6757.357028 C = 8543.549166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.398 5.398 3 C 0.136 3.864 4 C -0.753 4.753 5 S 2.729 3.271 6 N -1.253 6.253 7 O -0.973 6.973 8 O -0.962 6.962 9 C -0.068 4.068 10 C -0.037 4.037 11 C 0.584 3.416 12 O -0.557 6.557 13 N -0.581 5.581 14 C 0.065 3.935 15 C -0.134 4.134 16 C 0.014 3.986 17 C -0.515 4.515 18 H 0.073 0.927 19 C 0.070 3.930 20 N -0.900 5.900 21 Si 0.882 3.118 22 H -0.275 1.275 23 H -0.296 1.296 24 H -0.264 1.264 25 C -0.113 4.113 26 C 0.111 3.889 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.190 0.810 31 H 0.416 0.584 32 H 0.417 0.583 33 H 0.176 0.824 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.794 17.030 -17.790 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.068 5.068 3 C -0.008 4.008 4 C -0.847 4.847 5 S 2.816 3.184 6 N -0.927 5.927 7 O -0.962 6.962 8 O -0.951 6.951 9 C -0.093 4.093 10 C -0.149 4.149 11 C 0.372 3.628 12 O -0.438 6.438 13 N -0.311 5.311 14 C -0.056 4.056 15 C -0.172 4.172 16 C -0.005 4.005 17 C -0.553 4.553 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.538 5.538 21 Si 0.712 3.288 22 H -0.202 1.202 23 H -0.224 1.224 24 H -0.189 1.189 25 C -0.151 4.151 26 C -0.011 4.011 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.207 0.793 31 H 0.242 0.758 32 H 0.247 0.753 33 H 0.193 0.807 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.268 17.010 -16.903 24.552 hybrid contribution 0.476 0.139 -0.786 0.930 sum -4.791 17.148 -17.689 25.099 Atomic orbital electron populations 1.22492 0.75106 1.05825 1.05095 1.44237 1.07535 1.05047 1.49975 1.21853 0.88525 0.92296 0.98127 1.30558 1.14322 1.09131 1.30712 1.00623 0.72839 0.73011 0.71879 1.53135 1.45642 1.66956 1.26954 1.93578 1.82736 1.43303 1.76612 1.93615 1.52601 1.72408 1.76490 1.21449 0.96072 0.92185 0.99575 1.20366 0.90194 0.88150 1.16184 1.16858 0.84212 0.83139 0.78552 1.90750 1.21272 1.83020 1.48758 1.47867 1.18740 1.07465 1.57072 1.22979 0.83244 1.02584 0.96840 1.22458 1.01641 1.00092 0.93048 1.19153 0.92667 0.90932 0.97760 1.21016 0.98603 1.37535 0.98169 0.90879 1.25037 0.98599 0.94964 0.94601 1.69896 1.26575 1.45748 1.11583 0.86925 0.82173 0.79415 0.80260 1.20161 1.22365 1.18883 1.21830 0.99792 1.00431 0.93009 1.21868 1.00819 0.79044 0.99354 0.89807 0.89008 0.87180 0.79329 0.75764 0.75285 0.80723 0.90968 0.87916 0.91598 0.92056 0.95253 0.92608 0.92286 0.91070 0.89646 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.74 59.85 0.64 1.10 16 2 N -0.40 -4.36 3.16 -120.23 -0.38 -4.74 16 3 C 0.14 1.27 11.11 -16.91 -0.19 1.08 16 4 C -0.75 -8.04 6.14 -39.98 -0.25 -8.29 16 5 S 2.73 27.66 6.43 -107.50 -0.69 26.97 16 6 N -1.25 -7.20 9.55 60.35 0.58 -6.62 16 7 O -0.97 -12.21 17.85 -57.17 -1.02 -13.23 16 8 O -0.96 -13.72 17.87 -57.17 -1.02 -14.74 16 9 C -0.07 -0.86 8.34 -39.12 -0.33 -1.19 16 10 C -0.04 -0.50 6.52 -81.98 -0.53 -1.04 16 11 C 0.58 9.32 7.55 -12.85 -0.10 9.22 16 12 O -0.56 -9.68 14.48 5.19 0.08 -9.60 16 13 N -0.58 -9.51 2.97 -174.04 -0.52 -10.02 16 14 C 0.07 1.08 5.39 -3.48 -0.02 1.06 16 15 C -0.13 -2.77 4.86 -26.39 -0.13 -2.89 16 16 C 0.01 0.31 1.65 -91.73 -0.15 0.15 16 17 C -0.52 -14.06 9.14 -34.44 -0.31 -14.38 16 18 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 19 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 20 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 21 Si 0.88 21.46 24.38 -169.99 -4.14 17.32 16 22 H -0.27 -6.56 6.86 56.52 0.39 -6.17 16 23 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.26 -5.98 6.53 56.52 0.37 -5.61 16 25 C -0.11 -2.13 5.30 -26.62 -0.14 -2.27 16 26 C 0.11 1.79 6.43 -3.72 -0.02 1.77 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.11 1.08 6.44 -51.93 -0.33 0.75 16 30 H 0.19 1.08 8.06 -52.48 -0.42 0.65 16 31 H 0.42 1.48 8.92 -34.48 -0.31 1.18 16 32 H 0.42 1.72 8.96 -34.47 -0.31 1.41 16 33 H 0.18 2.11 5.78 -52.49 -0.30 1.81 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.10 1.55 3.40 -51.93 -0.18 1.38 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.06 1.35 3.24 -51.93 -0.17 1.18 16 38 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 352.04 15.07 5.31 5.31 Total: -1.00 -37.70 352.04 -7.99 -45.69 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.32 Total: 4.00 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -1.62 Total: -13.79 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.45 Total: -47.92 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.97 Total: -37.57 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Atomic # 16 Polarization: 27.66 SS G_CDS: -0.69 Total: 26.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.70 -7.99 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771648300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.974 kcal (2) G-P(sol) polarization free energy of solvation -37.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds