Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34220 * 117.00208 * 2 1 4 4 O 1.20830 * 120.00140 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00139 * 179.97438 * 3 2 1 6 6 N 1.46505 * 109.47442 * 180.02562 * 5 3 2 7 7 C 1.36855 * 120.00038 * 263.02238 * 6 5 3 8 8 H 1.08000 * 119.99238 * 214.12751 * 7 6 5 9 9 C 1.39055 * 120.00067 * 34.12059 * 7 6 5 10 10 N 1.31356 * 119.99993 * 5.15696 * 9 7 6 11 11 Si 1.86802 * 119.99965 * 185.15082 * 9 7 6 12 12 H 1.48499 * 109.47070 * 90.00551 * 11 9 7 13 13 H 1.48494 * 109.47241 * 210.00505 * 11 9 7 14 14 H 1.48502 * 109.46945 * 330.00323 * 11 9 7 15 15 C 1.34774 * 119.99732 * 83.01424 * 6 5 3 16 16 O 1.21606 * 120.00519 * 6.08241 * 15 6 5 17 17 C 1.47569 * 119.99762 * 186.07719 * 15 6 5 18 18 C 1.40173 * 120.86794 * 205.38389 * 17 15 6 19 19 N 1.31921 * 119.01040 * 179.97438 * 18 17 15 20 20 C 1.32736 * 120.90134 * 0.02562 * 19 18 17 21 21 C 1.48167 * 119.04243 * 179.97438 * 20 19 18 22 22 C 1.39461 * 120.13188 * 359.97438 * 21 20 19 23 23 C 1.37982 * 119.86154 * 180.02562 * 22 21 20 24 24 C 1.38349 * 120.13507 * 359.97306 * 23 22 21 25 25 C 1.38341 * 120.26884 * 0.02562 * 24 23 22 26 26 C 1.37984 * 120.13323 * 0.02562 * 25 24 23 27 27 N 1.32733 * 121.91174 * 0.25794 * 20 19 18 28 28 C 1.31928 * 120.90121 * 359.47286 * 27 20 19 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47454 * 300.00132 * 1 2 3 31 31 H 1.09007 * 109.46899 * 59.99982 * 1 2 3 32 32 H 1.09003 * 109.47453 * 59.99995 * 5 3 2 33 33 H 1.08998 * 109.47717 * 299.99895 * 5 3 2 34 34 H 0.97008 * 119.99691 * 179.97438 * 10 9 7 35 35 H 1.07998 * 120.49217 * 359.96413 * 18 17 15 36 36 H 1.07997 * 120.07008 * 0.03985 * 22 21 20 37 37 H 1.08001 * 119.93230 * 180.25258 * 23 22 21 38 38 H 1.07996 * 119.86511 * 179.97438 * 24 23 22 39 39 H 1.08001 * 119.93566 * 179.97438 * 25 24 23 40 40 H 1.08000 * 120.07118 * 179.97438 * 26 25 24 41 41 H 1.07998 * 120.49504 * 180.27723 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 7 3.9817 2.6796 0.0011 7 6 4.3143 3.2953 -1.1751 8 1 5.0899 4.0467 -1.1906 9 6 3.6537 2.9532 -2.3499 10 7 2.6432 2.1147 -2.3150 11 14 4.2033 3.6864 -3.9778 12 1 5.2314 2.8095 -4.5937 13 1 3.0366 3.7972 -4.8898 14 1 4.7787 5.0353 -3.7441 15 6 4.0363 3.3658 1.1598 16 8 3.8486 2.7922 2.2156 17 6 4.3238 4.8131 1.1474 18 6 4.8972 5.4420 2.2612 19 7 5.1392 6.7378 2.2101 20 6 4.8469 7.4436 1.1246 21 6 5.1356 8.8968 1.1121 22 6 5.7059 9.5069 2.2291 23 6 5.9719 10.8607 2.2116 24 6 5.6747 11.6126 1.0890 25 6 5.1089 11.0130 -0.0221 26 6 4.8373 9.6602 -0.0163 27 7 4.2984 6.8864 0.0520 28 6 4.0302 5.5950 0.0216 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.9564 0.7804 -0.8891 33 1 3.9557 0.7808 0.8908 34 1 2.1822 1.8764 -3.1346 35 1 5.1371 4.8742 3.1480 36 1 5.9390 8.9209 3.1058 37 1 6.4173 11.3336 3.0745 38 1 5.8843 12.6719 1.0802 39 1 4.8787 11.6052 -0.8954 40 1 4.3952 9.1933 -0.8840 41 1 3.5880 5.1476 -0.8562 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120576393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -22.196039 kcal Electronic energy + Delta-G solvation = -29060.950460 eV Core-core repulsion = 24907.242529 eV Total energy + Delta-G solvation = -4153.707931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.73379 -39.51719 -38.82786 -38.10392 -35.58700 -34.80886 -33.31425 -32.77432 -31.85578 -30.87154 -30.12283 -28.39996 -26.43058 -25.50842 -24.23622 -24.12157 -22.08213 -21.67502 -20.56034 -19.61374 -17.99181 -17.57101 -17.21336 -16.70726 -16.12893 -15.82874 -15.63027 -15.30596 -14.80340 -14.66387 -14.53888 -14.52073 -14.26759 -13.48735 -13.40237 -13.26131 -13.19714 -12.89318 -12.66405 -12.57001 -12.33246 -11.83043 -11.41360 -11.37141 -11.32385 -11.15506 -11.04144 -10.97395 -10.87603 -10.54700 -10.31744 -9.86972 -9.72774 -9.51676 -9.21234 -8.91766 -8.91681 -8.77589 -8.26603 -8.03421 -6.74254 -4.40039 0.53785 1.44718 1.59841 1.74253 2.97595 3.07073 3.10218 3.36985 3.61169 3.70577 3.88278 3.98300 4.02933 4.37406 4.45301 4.52086 4.79154 4.95287 5.03743 5.12272 5.19327 5.45627 5.55206 5.62877 5.63745 5.66051 5.72632 5.78923 5.88685 5.96013 6.08129 6.12262 6.27702 6.37641 6.43939 6.47865 6.49839 6.68628 6.88753 6.95721 7.06861 7.32585 7.41246 7.46862 7.96572 8.45387 8.68363 8.99756 9.09504 9.47304 10.30961 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.003327 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.349344 B = 8414.183902 C = 9593.709018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.377 6.377 3 C 0.484 3.516 4 O -0.492 6.492 5 C 0.157 3.843 6 N -0.416 5.416 7 C -0.353 4.353 8 H 0.102 0.898 9 C 0.050 3.950 10 N -0.852 5.852 11 Si 0.924 3.076 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.261 1.261 15 C 0.523 3.477 16 O -0.592 6.592 17 C -0.199 4.199 18 C 0.182 3.818 19 N -0.524 5.524 20 C 0.342 3.658 21 C -0.037 4.037 22 C -0.074 4.074 23 C -0.134 4.134 24 C -0.108 4.108 25 C -0.133 4.133 26 C -0.073 4.073 27 N -0.522 5.522 28 C 0.191 3.809 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.278 0.722 35 H 0.173 0.827 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.138 0.862 41 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 7.411 1.667 8.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.295 6.295 3 C 0.325 3.675 4 O -0.376 6.376 5 C 0.031 3.969 6 N -0.133 5.133 7 C -0.480 4.480 8 H 0.120 0.880 9 C -0.159 4.159 10 N -0.486 5.486 11 Si 0.749 3.251 12 H -0.198 1.198 13 H -0.204 1.204 14 H -0.185 1.185 15 C 0.312 3.688 16 O -0.478 6.478 17 C -0.206 4.206 18 C 0.015 3.985 19 N -0.237 5.237 20 C 0.078 3.922 21 C -0.039 4.039 22 C -0.094 4.094 23 C -0.152 4.152 24 C -0.127 4.127 25 C -0.151 4.151 26 C -0.092 4.092 27 N -0.236 5.236 28 C 0.025 3.975 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.190 0.810 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.156 0.844 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.897 8.237 2.012 8.961 hybrid contribution -0.358 -0.696 -1.061 1.318 sum 2.539 7.541 0.952 8.014 Atomic orbital electron populations 1.22925 0.78545 1.01799 1.01683 1.86434 1.21774 1.35404 1.85848 1.23671 0.92061 0.80699 0.71059 1.90517 1.66325 1.36265 1.44524 1.20406 0.87617 0.85277 1.03580 1.43017 1.56361 1.07867 1.06101 1.19634 1.19469 1.24460 0.84482 0.88026 1.25471 0.93873 0.96253 1.00289 1.69597 1.18005 1.31444 1.29583 0.85944 0.78547 0.80043 0.80594 1.19791 1.20365 1.18528 1.17668 0.81688 0.85224 0.84255 1.90657 1.56310 1.69788 1.31013 1.21808 1.04129 0.97480 0.97229 1.23261 0.88906 0.89301 0.97053 1.68269 1.20424 1.07802 1.27220 1.21368 0.91284 0.93987 0.85563 1.18165 1.01766 0.88539 0.95388 1.21355 0.95696 0.94528 0.97831 1.21081 1.01629 0.93871 0.98618 1.21278 0.98146 0.99768 0.93491 1.21099 1.00566 0.94694 0.98733 1.21407 0.96659 0.93385 0.97782 1.68510 1.14406 1.13274 1.27397 1.24936 0.87599 0.86738 0.98195 0.89616 0.93148 0.92579 0.86535 0.89589 0.91060 0.80990 0.84597 0.85798 0.86119 0.85739 0.84398 0.77456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.75 10.56 101.05 1.07 1.81 16 2 O -0.38 -7.70 10.56 -39.23 -0.41 -8.11 16 3 C 0.48 11.31 5.99 36.01 0.22 11.53 16 4 O -0.49 -12.97 15.03 -18.75 -0.28 -13.26 16 5 C 0.16 3.48 5.18 -5.19 -0.03 3.45 16 6 N -0.42 -9.77 2.15 -117.27 -0.25 -10.02 16 7 C -0.35 -8.06 6.18 -15.01 -0.09 -8.16 16 8 H 0.10 2.26 6.16 -52.49 -0.32 1.93 16 9 C 0.05 1.13 5.14 -17.45 -0.09 1.04 16 10 N -0.85 -20.33 8.70 55.50 0.48 -19.84 16 11 Si 0.92 17.93 29.56 -169.99 -5.02 12.91 16 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 13 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 14 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 15 C 0.52 12.37 7.20 -12.46 -0.09 12.28 16 16 O -0.59 -14.95 16.36 5.27 0.09 -14.86 16 17 C -0.20 -4.26 5.57 -104.64 -0.58 -4.84 16 18 C 0.18 3.48 10.88 -16.79 -0.18 3.30 16 19 N -0.52 -9.70 9.42 -10.81 -0.10 -9.80 16 20 C 0.34 6.36 7.55 -156.77 -1.18 5.17 16 21 C -0.04 -0.58 5.88 -104.91 -0.62 -1.19 16 22 C -0.07 -1.01 9.56 -39.22 -0.38 -1.38 16 23 C -0.13 -1.47 10.03 -39.63 -0.40 -1.86 16 24 C -0.11 -1.11 10.04 -39.50 -0.40 -1.51 16 25 C -0.13 -1.50 10.03 -39.64 -0.40 -1.90 16 26 C -0.07 -1.02 9.56 -39.22 -0.38 -1.40 16 27 N -0.52 -10.31 9.42 -10.81 -0.10 -10.41 16 28 C 0.19 4.01 9.08 -16.78 -0.15 3.86 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.12 2.51 7.11 -51.93 -0.37 2.14 16 33 H 0.09 1.79 7.56 -51.93 -0.39 1.39 16 34 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 35 H 0.17 2.97 7.93 -52.49 -0.42 2.55 16 36 H 0.14 1.80 7.50 -52.49 -0.39 1.41 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 40 H 0.14 1.97 7.50 -52.49 -0.39 1.58 16 41 H 0.21 4.59 5.35 -52.49 -0.28 4.31 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -29.51 356.94 -8.15 -37.65 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -4.24 Total: 10.16 kcal Atomic # 6 Polarization: 23.88 SS G_CDS: -3.68 Total: 20.21 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.03 Total: -50.07 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -0.61 Total: -36.23 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.51 -8.15 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120576393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.459 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds