Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42098 * 110.54070 * 2 1 4 4 O 1.42102 * 110.53840 * 223.24985 * 2 1 3 5 5 C 1.76196 * 104.45051 * 111.62483 * 2 1 3 6 6 C 1.38306 * 119.96202 * 270.29643 * 5 2 1 7 7 C 1.38265 * 120.14784 * 180.25385 * 6 5 2 8 8 C 1.38133 * 120.07407 * 359.44555 * 7 6 5 9 9 C 1.38886 * 119.92263 * 0.28038 * 8 7 6 10 10 N 1.39676 * 120.07159 * 179.97438 * 9 8 7 11 11 N 1.40101 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.34774 * 119.99853 * 180.02562 * 11 10 9 13 13 O 1.21594 * 119.99724 * 179.97438 * 12 11 10 14 14 N 1.34778 * 120.00321 * 359.97438 * 12 11 10 15 15 C 1.46493 * 119.99999 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47336 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47388 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47232 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99802 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00258 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99810 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99721 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47261 * 89.99465 * 22 20 18 24 24 H 1.48497 * 109.46748 * 209.99680 * 22 20 18 25 25 H 1.48502 * 109.47032 * 329.99555 * 22 20 18 26 26 C 1.38089 * 119.96058 * 89.99754 * 5 2 1 27 27 H 1.08999 * 109.47472 * 308.37788 * 1 2 3 28 28 H 1.09004 * 109.47300 * 68.37231 * 1 2 3 29 29 H 1.09000 * 109.47433 * 188.37462 * 1 2 3 30 30 H 1.08001 * 119.92834 * 359.97438 * 6 5 2 31 31 H 1.08002 * 119.96572 * 179.72711 * 7 6 5 32 32 H 1.07999 * 120.03792 * 180.25490 * 8 7 6 33 33 H 0.97003 * 119.99650 * 180.02562 * 10 9 8 34 34 H 0.96993 * 119.99584 * 359.97438 * 11 10 9 35 35 H 0.96994 * 119.99742 * 0.02562 * 14 12 11 36 36 H 1.09003 * 109.47608 * 299.99946 * 15 14 12 37 37 H 1.08999 * 109.47708 * 59.99727 * 15 14 12 38 38 H 1.09006 * 109.46898 * 300.00185 * 16 15 14 39 39 H 1.08999 * 109.47277 * 59.99056 * 16 15 14 40 40 H 1.08990 * 109.47463 * 299.99659 * 17 16 15 41 41 H 1.09002 * 109.47044 * 59.99894 * 17 16 15 42 42 H 0.97007 * 119.99906 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.03755 * 0.04352 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4200 0.2380 2.6509 7 6 2.7702 -0.2507 3.8960 8 6 2.9438 -1.6083 4.0830 9 6 2.7720 -2.4820 3.0172 10 7 2.9473 -3.8552 3.2026 11 7 3.2974 -4.3527 4.4647 12 6 3.4670 -5.6777 4.6434 13 8 3.7713 -6.1093 5.7387 14 7 3.2994 -6.5243 3.6082 15 6 3.4833 -7.9646 3.8027 16 6 3.2362 -8.6935 2.4804 17 6 3.4289 -10.1976 2.6834 18 6 3.1849 -10.9156 1.3810 19 1 2.9194 -10.3550 0.4968 20 6 3.3016 -12.2880 1.3179 21 7 3.0892 -12.9144 0.1813 22 14 3.7615 -13.2574 2.8470 23 1 2.5278 -13.6445 3.5773 24 1 4.5072 -14.4795 2.4525 25 1 4.6150 -12.4189 3.7266 26 6 2.4257 -1.9871 1.7661 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3788 -0.9553 29 1 -0.3634 -1.0167 0.1497 30 1 2.2806 1.2995 2.5085 31 1 2.9036 0.4292 4.7245 32 1 3.2133 -1.9898 5.0568 33 1 2.8274 -4.4645 2.4573 34 1 3.4184 -3.7433 5.2096 35 1 3.0570 -6.1799 2.7345 36 1 4.5017 -8.1587 4.1394 37 1 2.7782 -8.3229 4.5528 38 1 2.2179 -8.4994 2.1433 39 1 3.9415 -8.3350 1.7306 40 1 4.4472 -10.3913 3.0201 41 1 2.7237 -10.5563 3.4332 42 1 3.1710 -13.8800 0.1369 43 1 2.2916 -2.6637 0.9351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181665255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -29.492826 kcal Electronic energy + Delta-G solvation = -26021.998287 eV Core-core repulsion = 22003.417894 eV Total energy + Delta-G solvation = -4018.580393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.63278 -39.61920 -37.51624 -36.66517 -36.32580 -35.73151 -33.40085 -32.46449 -31.82153 -31.28814 -29.98128 -28.54350 -27.22245 -24.13121 -23.10169 -22.90067 -21.12507 -20.54033 -19.74774 -18.92858 -18.76934 -17.26086 -16.75940 -16.72936 -16.59271 -16.32802 -15.93988 -15.65596 -15.43040 -14.91529 -14.61807 -14.36677 -14.26514 -13.99540 -13.92784 -13.76578 -13.69034 -12.75968 -12.68945 -12.48641 -12.45683 -12.41467 -12.09816 -12.02740 -11.96990 -11.53558 -11.17176 -11.09996 -10.95350 -10.67115 -10.12148 -9.95766 -9.93025 -9.76533 -9.76006 -9.27976 -9.08888 -8.59454 -7.74842 -6.10016 -4.09188 -0.41115 0.36502 0.92545 1.55616 2.41095 2.88750 2.89719 3.05268 3.28267 3.36239 3.39847 3.51097 3.68030 4.20448 4.27774 4.31881 4.40827 4.44184 4.51526 4.69026 4.95363 5.12231 5.14120 5.18041 5.23892 5.39035 5.52650 5.56088 5.62675 5.82047 5.89408 5.95340 6.17259 6.25585 6.35356 6.51671 6.69104 6.82233 7.01344 7.16112 7.29680 7.70951 7.86667 8.29477 8.45776 8.93416 9.51911 11.03115 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.001975 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.921804 B =14177.093091 C =15883.124833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.500 3.500 3 O -0.937 6.937 4 O -0.934 6.934 5 C -0.606 4.606 6 C -0.083 4.083 7 C -0.084 4.084 8 C -0.145 4.145 9 C 0.204 3.796 10 N -0.546 5.546 11 N -0.539 5.539 12 C 0.710 3.290 13 O -0.575 6.575 14 N -0.736 5.736 15 C 0.130 3.870 16 C -0.114 4.114 17 C -0.010 4.010 18 C -0.523 4.523 19 H 0.072 0.928 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.264 1.264 26 C -0.096 4.096 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.427 0.573 34 H 0.430 0.570 35 H 0.391 0.609 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 31.389 4.632 32.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.679 3.321 3 O -0.934 6.934 4 O -0.931 6.931 5 C -0.693 4.693 6 C -0.105 4.105 7 C -0.104 4.104 8 C -0.169 4.169 9 C 0.100 3.900 10 N -0.276 5.276 11 N -0.294 5.294 12 C 0.410 3.590 13 O -0.449 6.449 14 N -0.392 5.392 15 C 0.007 3.993 16 C -0.152 4.152 17 C -0.048 4.048 18 C -0.561 4.561 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.541 5.541 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.120 4.120 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.270 0.730 34 H 0.275 0.725 35 H 0.226 0.774 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.259 30.831 4.824 31.646 hybrid contribution -0.350 -0.804 1.060 1.375 sum -5.608 30.027 5.884 31.108 Atomic orbital electron populations 1.30219 1.25482 1.12303 1.11941 1.05211 0.77931 0.74660 0.74268 1.93593 1.77362 1.36460 1.85993 1.93614 1.77249 1.61521 1.60730 1.30319 1.15533 1.01581 1.21840 1.20737 0.98621 0.99399 0.91699 1.21033 0.97390 0.94517 0.97461 1.20793 1.04498 0.93645 0.97950 1.17696 0.96100 0.81852 0.94347 1.43340 1.78255 1.03676 1.02360 1.44572 1.76717 1.05617 1.02517 1.15757 0.78830 0.79319 0.85138 1.91035 1.55881 1.73715 1.24297 1.45381 1.74537 1.08329 1.10967 1.21639 1.01840 0.75888 0.99971 1.21730 1.01542 0.97979 0.93954 1.19496 0.96834 0.90467 0.98042 1.21076 1.47722 0.92077 0.95260 0.90988 1.25029 0.94627 0.97846 0.95972 1.69908 1.49783 1.09025 1.25335 0.86773 0.79134 0.79652 0.83721 1.20241 1.21340 1.18899 1.20189 1.01974 0.94046 0.95806 0.84914 0.84919 0.84783 0.84199 0.84790 0.85609 0.72994 0.72489 0.77445 0.91514 0.91522 0.92056 0.91989 0.96220 0.96673 0.92649 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.37 10.80 101.05 1.09 -0.28 16 2 S 2.50 15.08 5.80 -107.50 -0.62 14.46 16 3 O -0.94 -8.51 17.13 -57.54 -0.99 -9.50 16 4 O -0.93 -9.08 17.12 -57.54 -0.99 -10.07 16 5 C -0.61 -4.06 5.65 -39.61 -0.22 -4.28 16 6 C -0.08 -0.52 9.47 -39.55 -0.37 -0.90 16 7 C -0.08 -0.50 10.04 -39.61 -0.40 -0.90 16 8 C -0.15 -0.99 9.48 -39.38 -0.37 -1.36 16 9 C 0.20 1.56 6.72 -83.79 -0.56 1.00 16 10 N -0.55 -4.32 6.45 32.41 0.21 -4.11 16 11 N -0.54 -5.20 6.22 27.64 0.17 -5.03 16 12 C 0.71 9.52 8.68 -86.92 -0.75 8.77 16 13 O -0.58 -10.01 17.18 5.28 0.09 -9.92 16 14 N -0.74 -9.32 5.52 -65.23 -0.36 -9.68 16 15 C 0.13 2.02 5.67 -4.05 -0.02 1.99 16 16 C -0.11 -2.01 5.27 -26.73 -0.14 -2.15 16 17 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 18 C -0.52 -14.44 9.66 -34.44 -0.33 -14.78 16 19 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 20 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 21 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 22 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 26 C -0.10 -0.69 9.32 -39.38 -0.37 -1.06 16 27 H 0.13 0.07 8.14 -51.92 -0.42 -0.35 16 28 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 29 H 0.13 0.14 8.14 -51.92 -0.42 -0.28 16 30 H 0.14 0.65 7.57 -52.49 -0.40 0.25 16 31 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 32 H 0.13 0.67 6.20 -52.49 -0.33 0.35 16 33 H 0.43 2.86 6.71 -182.59 -1.23 1.63 16 34 H 0.43 3.52 6.70 -182.60 -1.22 2.30 16 35 H 0.39 3.89 6.39 -40.82 -0.26 3.63 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.15 0.86 7.57 -52.49 -0.40 0.46 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -38.95 375.13 -10.96 -49.91 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -7.57 Total: 0.62 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.67 Total: -12.47 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.79 Total: -45.45 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.88 Total: -29.48 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 15.08 SS G_CDS: -0.62 Total: 14.46 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.95 -10.96 -49.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181665255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.417 kcal (2) G-P(sol) polarization free energy of solvation -38.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds