Wall clock time and date at job start Sat Apr 11 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42098 * 110.54070 * 2 1 4 4 O 1.42102 * 110.53840 * 223.24985 * 2 1 3 5 5 C 1.76196 * 104.45051 * 111.62483 * 2 1 3 6 6 C 1.38306 * 119.96202 * 270.29643 * 5 2 1 7 7 C 1.38265 * 120.14784 * 180.25385 * 6 5 2 8 8 C 1.38133 * 120.07407 * 359.44555 * 7 6 5 9 9 C 1.38886 * 119.92263 * 0.28038 * 8 7 6 10 10 N 1.39676 * 120.07159 * 179.97438 * 9 8 7 11 11 N 1.40101 * 120.00179 * 359.97438 * 10 9 8 12 12 C 1.34774 * 119.99853 * 180.02562 * 11 10 9 13 13 O 1.21594 * 119.99724 * 179.97438 * 12 11 10 14 14 N 1.34778 * 120.00321 * 359.97438 * 12 11 10 15 15 C 1.46493 * 119.99999 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47336 * 180.02562 * 15 14 12 17 17 C 1.52996 * 109.47388 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47232 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99802 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00258 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99810 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99721 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47261 * 89.99465 * 22 20 18 24 24 H 1.48497 * 109.46748 * 209.99680 * 22 20 18 25 25 H 1.48502 * 109.47032 * 329.99555 * 22 20 18 26 26 C 1.38089 * 119.96058 * 89.99754 * 5 2 1 27 27 H 1.08999 * 109.47472 * 308.37788 * 1 2 3 28 28 H 1.09004 * 109.47300 * 68.37231 * 1 2 3 29 29 H 1.09000 * 109.47433 * 188.37462 * 1 2 3 30 30 H 1.08001 * 119.92834 * 359.97438 * 6 5 2 31 31 H 1.08002 * 119.96572 * 179.72711 * 7 6 5 32 32 H 1.07999 * 120.03792 * 180.25490 * 8 7 6 33 33 H 0.97003 * 119.99650 * 180.02562 * 10 9 8 34 34 H 0.96993 * 119.99584 * 359.97438 * 11 10 9 35 35 H 0.96994 * 119.99742 * 0.02562 * 14 12 11 36 36 H 1.09003 * 109.47608 * 299.99946 * 15 14 12 37 37 H 1.08999 * 109.47708 * 59.99727 * 15 14 12 38 38 H 1.09006 * 109.46898 * 300.00185 * 16 15 14 39 39 H 1.08999 * 109.47277 * 59.99056 * 16 15 14 40 40 H 1.08990 * 109.47463 * 299.99659 * 17 16 15 41 41 H 1.09002 * 109.47044 * 59.99894 * 17 16 15 42 42 H 0.97007 * 119.99906 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.03755 * 0.04352 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4200 0.2380 2.6509 7 6 2.7702 -0.2507 3.8960 8 6 2.9438 -1.6083 4.0830 9 6 2.7720 -2.4820 3.0172 10 7 2.9473 -3.8552 3.2026 11 7 3.2974 -4.3527 4.4647 12 6 3.4670 -5.6777 4.6434 13 8 3.7713 -6.1093 5.7387 14 7 3.2994 -6.5243 3.6082 15 6 3.4833 -7.9646 3.8027 16 6 3.2362 -8.6935 2.4804 17 6 3.4289 -10.1976 2.6834 18 6 3.1849 -10.9156 1.3810 19 1 2.9194 -10.3550 0.4968 20 6 3.3016 -12.2880 1.3179 21 7 3.0892 -12.9144 0.1813 22 14 3.7615 -13.2574 2.8470 23 1 2.5278 -13.6445 3.5773 24 1 4.5072 -14.4795 2.4525 25 1 4.6150 -12.4189 3.7266 26 6 2.4257 -1.9871 1.7661 27 1 -0.3634 0.6380 0.8056 28 1 -0.3634 0.3788 -0.9553 29 1 -0.3634 -1.0167 0.1497 30 1 2.2806 1.2995 2.5085 31 1 2.9036 0.4292 4.7245 32 1 3.2133 -1.9898 5.0568 33 1 2.8274 -4.4645 2.4573 34 1 3.4184 -3.7433 5.2096 35 1 3.0570 -6.1799 2.7345 36 1 4.5017 -8.1587 4.1394 37 1 2.7782 -8.3229 4.5528 38 1 2.2179 -8.4994 2.1433 39 1 3.9415 -8.3350 1.7306 40 1 4.4472 -10.3913 3.0201 41 1 2.7237 -10.5563 3.4332 42 1 3.1710 -13.8800 0.1369 43 1 2.2916 -2.6637 0.9351 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181665255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:31 Heat of formation + Delta-G solvation = -60.290870 kcal Electronic energy + Delta-G solvation = -26023.333790 eV Core-core repulsion = 22003.417894 eV Total energy + Delta-G solvation = -4019.915896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50532 -40.31333 -38.10324 -37.44412 -37.08175 -36.92160 -35.15704 -33.50494 -32.82607 -32.24551 -30.21254 -29.23701 -28.82017 -25.10615 -24.26839 -23.48408 -22.29232 -21.97277 -20.32890 -19.93008 -19.33482 -18.88587 -17.88642 -17.26593 -17.10074 -17.03591 -16.85837 -16.57289 -16.28413 -16.13079 -15.85491 -15.53167 -15.14404 -14.77145 -14.71585 -14.70612 -13.98774 -13.88589 -13.82419 -13.72623 -13.21457 -13.10139 -13.04412 -12.90881 -12.74789 -12.69366 -12.58732 -12.04503 -11.99948 -11.81375 -11.61415 -11.58216 -11.52160 -11.32648 -10.75791 -10.69516 -10.29823 -10.14733 -8.39547 -8.28900 -6.32778 -0.82722 -0.14554 0.41072 0.81579 1.37394 1.39393 1.50769 1.88498 1.92305 1.98216 2.36740 2.51723 3.07071 3.08779 3.24889 3.60481 3.85152 3.94167 4.03838 4.15761 4.20100 4.22632 4.23569 4.48332 4.50028 4.58084 4.70418 4.87765 4.88737 5.01397 5.02149 5.03384 5.14068 5.23444 5.28489 5.36848 5.47300 5.55884 5.64595 5.70974 5.97786 6.27583 6.35014 6.75552 7.00807 7.31499 7.32078 8.87444 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014460 B = 0.001975 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.921804 B =14177.093091 C =15883.124833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.626 4.626 2 S 2.504 3.496 3 O -0.974 6.974 4 O -0.980 6.980 5 C -0.610 4.610 6 C -0.089 4.089 7 C -0.086 4.086 8 C -0.153 4.153 9 C 0.190 3.810 10 N -0.546 5.546 11 N -0.524 5.524 12 C 0.710 3.290 13 O -0.617 6.617 14 N -0.729 5.729 15 C 0.143 3.857 16 C -0.101 4.101 17 C -0.012 4.012 18 C -0.530 4.530 19 H 0.038 0.962 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.247 1.247 26 C -0.106 4.106 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.138 0.862 33 H 0.431 0.569 34 H 0.438 0.562 35 H 0.405 0.595 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.266 0.734 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 32.995 6.295 34.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.780 4.780 2 S 2.688 3.312 3 O -0.972 6.972 4 O -0.977 6.977 5 C -0.697 4.697 6 C -0.110 4.110 7 C -0.106 4.106 8 C -0.176 4.176 9 C 0.087 3.913 10 N -0.278 5.278 11 N -0.278 5.278 12 C 0.409 3.591 13 O -0.495 6.495 14 N -0.386 5.386 15 C 0.019 3.981 16 C -0.139 4.139 17 C -0.050 4.050 18 C -0.568 4.568 19 H 0.056 0.944 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.771 3.229 23 H -0.192 1.192 24 H -0.212 1.212 25 H -0.170 1.170 26 C -0.131 4.131 27 H 0.175 0.825 28 H 0.169 0.831 29 H 0.169 0.831 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.275 0.725 34 H 0.285 0.715 35 H 0.242 0.758 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.075 0.925 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.122 32.518 6.465 33.715 hybrid contribution -0.173 -1.136 0.446 1.233 sum -6.295 31.382 6.911 32.745 Atomic orbital electron populations 1.30046 1.19624 1.14260 1.14065 1.04880 0.79923 0.73072 0.73340 1.93541 1.79615 1.37724 1.86297 1.93555 1.79670 1.62380 1.62113 1.30371 1.15780 1.01465 1.22096 1.21057 0.97979 1.00191 0.91764 1.21369 0.96463 0.94606 0.98126 1.21063 1.04194 0.94083 0.98297 1.17841 0.96956 0.81640 0.94884 1.43325 1.78907 1.04038 1.01527 1.44245 1.75328 1.04564 1.03640 1.15736 0.78699 0.80186 0.84443 1.91007 1.57769 1.74898 1.25828 1.45079 1.74520 1.07257 1.11722 1.21262 1.01335 0.77252 0.98229 1.21493 1.02022 0.95111 0.95283 1.19463 0.96918 0.93245 0.95406 1.21466 1.46632 0.92367 0.96319 0.94399 1.25993 0.94815 0.99256 0.99285 1.70060 1.51725 1.09466 1.27889 0.85698 0.79373 0.78071 0.79767 1.19207 1.21236 1.17008 1.20348 1.02200 0.94536 0.95999 0.82503 0.83108 0.83076 0.82766 0.82306 0.84415 0.72467 0.71507 0.75800 0.92181 0.91893 0.91492 0.91738 0.96016 0.95988 0.92549 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.78 10.80 113.37 1.22 0.45 16 2 S 2.50 28.41 5.80 -56.49 -0.33 28.08 16 3 O -0.97 -17.44 17.13 -127.65 -2.19 -19.63 16 4 O -0.98 -19.34 17.12 -127.65 -2.19 -21.53 16 5 C -0.61 -7.50 5.65 22.25 0.13 -7.38 16 6 C -0.09 -0.96 9.47 22.29 0.21 -0.75 16 7 C -0.09 -0.83 10.04 22.25 0.22 -0.61 16 8 C -0.15 -1.80 9.48 22.40 0.21 -1.59 16 9 C 0.19 2.65 6.72 38.21 0.26 2.90 16 10 N -0.55 -7.87 6.45 -51.37 -0.33 -8.21 16 11 N -0.52 -9.35 6.22 -184.74 -1.15 -10.50 16 12 C 0.71 18.18 8.68 179.05 1.55 19.73 16 13 O -0.62 -20.99 17.18 -4.01 -0.07 -21.06 16 14 N -0.73 -17.41 5.52 -478.54 -2.64 -20.05 16 15 C 0.14 4.25 5.67 86.38 0.49 4.74 16 16 C -0.10 -3.45 5.27 30.59 0.16 -3.29 16 17 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 18 C -0.53 -29.52 9.66 25.60 0.25 -29.27 16 19 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 20 C 0.00 0.19 5.47 84.66 0.46 0.65 16 21 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 22 Si 0.95 43.80 27.47 68.60 1.88 45.68 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 25 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 26 C -0.11 -1.44 9.32 22.40 0.21 -1.23 16 27 H 0.16 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.15 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.15 1.15 7.57 -2.91 -0.02 1.13 16 31 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.14 1.20 6.20 -2.91 -0.02 1.18 16 33 H 0.43 5.22 6.71 -213.32 -1.43 3.79 16 34 H 0.44 6.49 6.70 -213.33 -1.43 5.06 16 35 H 0.41 7.40 6.39 -92.71 -0.59 6.80 16 36 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 41 H 0.02 0.94 7.57 -2.39 -0.02 0.92 16 42 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 43 H 0.15 1.73 7.57 -2.91 -0.02 1.70 16 Total: -1.00 -85.52 375.13 -3.65 -89.17 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -2.44 Total: 12.78 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 5.50 Total: -16.06 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -3.82 Total: -97.43 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -4.44 Total: -62.22 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Atomic # 16 Polarization: 28.41 SS G_CDS: -0.33 Total: 28.08 kcal Total: -85.52 -3.65 -89.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181665255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.875 kcal (2) G-P(sol) polarization free energy of solvation -85.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds