Wall clock time and date at job start Sat Apr 11 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35759 * 116.99704 * 2 1 4 4 C 1.38913 * 119.60016 * 179.97438 * 3 2 1 5 5 C 1.38318 * 119.18402 * 179.97438 * 4 3 2 6 6 C 1.39396 * 118.42220 * 359.97438 * 5 4 3 7 7 N 1.40070 * 120.42696 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99617 * 34.70348 * 7 6 5 9 9 O 1.21567 * 120.00407 * 5.33910 * 8 7 6 10 10 C 1.47835 * 119.99761 * 185.34317 * 8 7 6 11 11 C 1.39668 * 120.10780 * 359.97438 * 10 8 7 12 12 C 1.38025 * 120.02093 * 180.02562 * 11 10 8 13 13 C 1.38209 * 120.23866 * 0.02562 * 12 11 10 14 14 C 1.39099 * 120.21172 * 359.97246 * 13 12 11 15 15 N 1.39562 * 120.01110 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00351 * 145.19567 * 15 14 13 17 17 O 1.21743 * 119.99880 * 354.63451 * 16 15 14 18 18 C 1.46178 * 120.00334 * 174.63434 * 16 15 14 19 19 H 1.08008 * 119.99644 * 359.97438 * 18 16 15 20 20 C 1.40114 * 120.00386 * 180.02562 * 18 16 15 21 21 N 1.30648 * 120.00060 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00361 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46663 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46921 * 119.99935 * 22 20 18 25 25 H 1.48501 * 109.47154 * 240.00076 * 22 20 18 26 26 C 1.38793 * 119.97810 * 0.02562 * 14 13 12 27 27 C 1.38680 * 119.14905 * 0.27780 * 6 5 4 28 28 N 1.31941 * 120.73179 * 359.42689 * 27 6 5 29 29 H 1.08999 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46727 * 300.00238 * 1 2 3 31 31 H 1.08998 * 109.46915 * 60.00309 * 1 2 3 32 32 H 1.07995 * 120.41343 * 0.02562 * 4 3 2 33 33 H 1.07990 * 120.78979 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00036 * 214.70423 * 7 6 5 35 35 H 1.07995 * 119.98722 * 0.02562 * 11 10 8 36 36 H 1.07998 * 119.87692 * 179.97438 * 12 11 10 37 37 H 1.07997 * 119.89298 * 180.02562 * 13 12 11 38 38 H 0.97003 * 119.99854 * 325.19473 * 15 14 13 39 39 H 0.96993 * 120.00135 * 180.02562 * 21 20 18 40 40 H 1.07992 * 120.11925 * 179.72304 * 26 14 13 41 41 H 1.07998 * 119.63325 * 179.70453 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.4330 1.2727 0.0005 5 6 4.0519 2.5097 0.0000 6 6 3.2524 3.6516 -0.0016 7 7 3.8350 4.9255 -0.0017 8 6 4.9887 5.1387 -0.6650 9 8 5.4730 4.2532 -1.3425 10 6 5.6652 6.4496 -0.5686 11 6 5.1106 7.4688 0.2088 12 6 5.7435 8.6922 0.2972 13 6 6.9264 8.9146 -0.3821 14 6 7.4875 7.9064 -1.1591 15 7 8.6824 8.1353 -1.8429 16 6 9.5756 7.1371 -1.9918 17 8 9.3862 6.0646 -1.4476 18 6 10.7717 7.3420 -2.8067 19 1 10.9395 8.2933 -3.2898 20 6 11.7000 6.3040 -2.9620 21 7 11.4968 5.1531 -2.3780 22 14 13.2289 6.5661 -4.0028 23 1 13.2242 7.9464 -4.5503 24 1 14.4384 6.3698 -3.1639 25 1 13.2391 5.5901 -5.1220 26 6 6.8586 6.6728 -1.2542 27 6 1.8728 3.5104 0.0032 28 7 1.3176 2.3135 -0.0020 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0214 0.3672 0.0005 33 1 5.1289 2.5890 0.0008 34 1 3.4081 5.6540 0.4756 35 1 4.1862 7.2996 0.7409 36 1 5.3123 9.4788 0.8986 37 1 7.4171 9.8738 -0.3087 38 1 8.8701 9.0130 -2.2110 39 1 12.1395 4.4347 -2.4851 40 1 7.2899 5.8900 -1.8604 41 1 1.2460 4.3898 0.0069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184499326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:37 Heat of formation + Delta-G solvation = -35.645570 kcal Electronic energy + Delta-G solvation = -27696.194292 eV Core-core repulsion = 23541.903145 eV Total energy + Delta-G solvation = -4154.291147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.09105 -40.02174 -38.95096 -37.82897 -36.85803 -34.88425 -33.59417 -32.54779 -32.40699 -30.98909 -29.79244 -28.92322 -27.36517 -26.27928 -24.33982 -23.79668 -22.58660 -22.32709 -20.55570 -19.81060 -18.65419 -18.35283 -17.45438 -17.21649 -16.85044 -16.16032 -15.82101 -15.56909 -15.51444 -15.05417 -14.64334 -14.46956 -14.30670 -14.11777 -13.91916 -13.56340 -13.43225 -13.39186 -12.82757 -12.69002 -12.57793 -12.06486 -11.98935 -11.63826 -11.55036 -11.32357 -11.14532 -11.09537 -10.66542 -10.64640 -10.34068 -10.13662 -9.89299 -9.52074 -9.44362 -8.95617 -8.68545 -8.06562 -7.82947 -7.28107 -6.37838 -4.85940 0.85220 1.06895 1.28814 1.80457 2.80845 2.98665 3.05426 3.06025 3.13069 3.17447 3.64127 3.95567 4.12693 4.13890 4.45805 4.47446 4.64243 4.73318 4.90405 5.00495 5.09435 5.09820 5.13192 5.29507 5.35678 5.48136 5.54288 5.59435 5.60343 5.84716 5.90615 5.98987 6.10864 6.23570 6.49391 6.59584 6.67026 6.85420 7.05761 7.11120 7.26047 7.32467 7.63439 7.65005 7.93393 8.09020 8.16566 8.81674 9.13143 10.33117 10.52837 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.002383 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.076558 B =11746.096464 C =13520.374775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.298 3.702 4 C -0.165 4.165 5 C -0.042 4.042 6 C 0.072 3.928 7 N -0.669 5.669 8 C 0.563 3.437 9 O -0.507 6.507 10 C -0.123 4.123 11 C -0.135 4.135 12 C -0.106 4.106 13 C -0.149 4.149 14 C 0.188 3.812 15 N -0.700 5.700 16 C 0.539 3.461 17 O -0.555 6.555 18 C -0.537 4.537 19 H 0.073 0.927 20 C 0.085 3.915 21 N -0.755 5.755 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.062 4.062 27 C 0.112 3.888 28 N -0.523 5.523 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.411 0.589 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.395 0.605 39 H 0.272 0.728 40 H 0.152 0.848 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.851 0.546 6.281 19.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.118 3.882 4 C -0.186 4.186 5 C -0.069 4.069 6 C -0.025 4.025 7 N -0.317 5.317 8 C 0.353 3.647 9 O -0.381 6.381 10 C -0.127 4.127 11 C -0.155 4.155 12 C -0.124 4.124 13 C -0.171 4.171 14 C 0.088 3.912 15 N -0.343 5.343 16 C 0.346 3.654 17 O -0.436 6.436 18 C -0.573 4.573 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.383 5.383 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.083 4.083 27 C -0.046 4.046 28 N -0.246 5.246 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.164 0.836 33 H 0.172 0.828 34 H 0.249 0.751 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.229 0.771 39 H 0.083 0.917 40 H 0.169 0.831 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -19.204 -1.417 6.139 20.211 hybrid contribution 1.294 1.214 -0.379 1.814 sum -17.910 -0.203 5.761 18.815 Atomic orbital electron populations 1.22825 0.77490 1.02768 1.02335 1.86253 1.22682 1.24454 1.88256 1.19777 0.89388 0.84557 0.94433 1.21017 0.91745 0.99314 1.06522 1.21551 1.01829 0.89905 0.93636 1.18594 0.92915 0.86046 1.04924 1.43338 1.25178 1.09757 1.53394 1.18589 0.79583 0.88373 0.78191 1.90834 1.63846 1.45073 1.38358 1.19467 0.97372 0.92865 1.03032 1.20917 1.00204 0.93544 1.00828 1.20686 0.95417 0.96685 0.99647 1.21147 0.97953 0.99887 0.98073 1.17888 0.87253 0.93670 0.92376 1.44259 1.16642 1.16111 1.57308 1.18467 0.82763 0.82309 0.81882 1.90683 1.77080 1.25276 1.50603 1.20872 1.04915 1.00314 1.31163 0.90870 1.25762 0.98863 0.94295 0.94728 1.69995 1.33005 1.02294 1.33035 0.86217 0.80890 0.79367 0.79784 1.18630 1.19984 1.19940 1.21464 0.91265 0.97851 0.97746 1.22125 0.90602 0.94289 0.97606 1.67226 1.40174 0.98274 1.18901 0.88791 0.92430 0.92395 0.83632 0.82751 0.75124 0.86638 0.85896 0.85881 0.77099 0.91668 0.83062 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.62 10.48 -18.99 -0.20 -3.82 16 3 C 0.30 3.79 7.49 -17.14 -0.13 3.67 16 4 C -0.16 -2.09 10.03 -39.30 -0.39 -2.49 16 5 C -0.04 -0.58 8.76 -39.12 -0.34 -0.93 16 6 C 0.07 0.91 6.27 -83.50 -0.52 0.39 16 7 N -0.67 -8.11 5.30 -10.59 -0.06 -8.17 16 8 C 0.56 9.40 7.52 -12.33 -0.09 9.31 16 9 O -0.51 -10.56 14.17 5.31 0.08 -10.48 16 10 C -0.12 -2.09 5.87 -104.99 -0.62 -2.71 16 11 C -0.13 -1.73 9.54 -39.13 -0.37 -2.10 16 12 C -0.11 -1.34 10.02 -39.67 -0.40 -1.73 16 13 C -0.15 -2.26 9.96 -39.27 -0.39 -2.65 16 14 C 0.19 3.69 6.24 -83.81 -0.52 3.17 16 15 N -0.70 -15.03 5.32 -11.23 -0.06 -15.09 16 16 C 0.54 14.66 7.46 -13.07 -0.10 14.57 16 17 O -0.56 -17.24 12.80 5.15 0.07 -17.17 16 18 C -0.54 -14.42 9.54 -35.69 -0.34 -14.76 16 19 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 20 C 0.09 2.28 5.50 -17.35 -0.10 2.19 16 21 N -0.76 -21.96 11.82 55.55 0.66 -21.31 16 22 Si 0.91 19.39 29.56 -169.99 -5.02 14.37 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 26 C -0.06 -1.30 8.18 -38.93 -0.32 -1.61 16 27 C 0.11 1.22 11.11 -17.34 -0.19 1.03 16 28 N -0.52 -6.38 9.20 -13.17 -0.12 -6.51 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 32 H 0.15 1.60 8.06 -52.49 -0.42 1.17 16 33 H 0.15 2.40 6.62 -52.49 -0.35 2.05 16 34 H 0.41 3.44 6.87 -40.82 -0.28 3.16 16 35 H 0.12 1.00 6.41 -52.49 -0.34 0.66 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.40 7.10 8.80 -40.82 -0.36 6.74 16 39 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 40 H 0.15 3.87 6.12 -52.49 -0.32 3.55 16 41 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -36.10 361.40 -7.14 -43.24 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -4.15 Total: 12.77 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -3.78 Total: 6.72 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.42 Total: -51.07 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.06 Total: -31.47 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.10 -7.14 -43.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184499326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.596 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds