Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35759 * 116.99704 * 2 1 4 4 C 1.38913 * 119.60016 * 179.97438 * 3 2 1 5 5 C 1.38318 * 119.18402 * 179.97438 * 4 3 2 6 6 C 1.39396 * 118.42220 * 359.97438 * 5 4 3 7 7 N 1.40070 * 120.42696 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99617 * 34.70348 * 7 6 5 9 9 O 1.21567 * 120.00407 * 5.33910 * 8 7 6 10 10 C 1.47835 * 119.99761 * 185.34317 * 8 7 6 11 11 C 1.39668 * 120.10780 * 359.97438 * 10 8 7 12 12 C 1.38025 * 120.02093 * 180.02562 * 11 10 8 13 13 C 1.38209 * 120.23866 * 0.02562 * 12 11 10 14 14 C 1.39099 * 120.21172 * 359.97246 * 13 12 11 15 15 N 1.39562 * 120.01110 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00351 * 145.19567 * 15 14 13 17 17 O 1.21743 * 119.99880 * 354.63451 * 16 15 14 18 18 C 1.46178 * 120.00334 * 174.63434 * 16 15 14 19 19 H 1.08008 * 119.99644 * 359.97438 * 18 16 15 20 20 C 1.40114 * 120.00386 * 180.02562 * 18 16 15 21 21 N 1.30648 * 120.00060 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 120.00361 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46663 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46921 * 119.99935 * 22 20 18 25 25 H 1.48501 * 109.47154 * 240.00076 * 22 20 18 26 26 C 1.38793 * 119.97810 * 0.02562 * 14 13 12 27 27 C 1.38680 * 119.14905 * 0.27780 * 6 5 4 28 28 N 1.31941 * 120.73179 * 359.42689 * 27 6 5 29 29 H 1.08999 * 109.47055 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46727 * 300.00238 * 1 2 3 31 31 H 1.08998 * 109.46915 * 60.00309 * 1 2 3 32 32 H 1.07995 * 120.41343 * 0.02562 * 4 3 2 33 33 H 1.07990 * 120.78979 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00036 * 214.70423 * 7 6 5 35 35 H 1.07995 * 119.98722 * 0.02562 * 11 10 8 36 36 H 1.07998 * 119.87692 * 179.97438 * 12 11 10 37 37 H 1.07997 * 119.89298 * 180.02562 * 13 12 11 38 38 H 0.97003 * 119.99854 * 325.19473 * 15 14 13 39 39 H 0.96993 * 120.00135 * 180.02562 * 21 20 18 40 40 H 1.07992 * 120.11925 * 179.72304 * 26 14 13 41 41 H 1.07998 * 119.63325 * 179.70453 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 3.4330 1.2727 0.0005 5 6 4.0519 2.5097 0.0000 6 6 3.2524 3.6516 -0.0016 7 7 3.8350 4.9255 -0.0017 8 6 4.9887 5.1387 -0.6650 9 8 5.4730 4.2532 -1.3425 10 6 5.6652 6.4496 -0.5686 11 6 5.1106 7.4688 0.2088 12 6 5.7435 8.6922 0.2972 13 6 6.9264 8.9146 -0.3821 14 6 7.4875 7.9064 -1.1591 15 7 8.6824 8.1353 -1.8429 16 6 9.5756 7.1371 -1.9918 17 8 9.3862 6.0646 -1.4476 18 6 10.7717 7.3420 -2.8067 19 1 10.9395 8.2933 -3.2898 20 6 11.7000 6.3040 -2.9620 21 7 11.4968 5.1531 -2.3780 22 14 13.2289 6.5661 -4.0028 23 1 13.2242 7.9464 -4.5503 24 1 14.4384 6.3698 -3.1639 25 1 13.2391 5.5901 -5.1220 26 6 6.8586 6.6728 -1.2542 27 6 1.8728 3.5104 0.0032 28 7 1.3176 2.3135 -0.0020 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 4.0214 0.3672 0.0005 33 1 5.1289 2.5890 0.0008 34 1 3.4081 5.6540 0.4756 35 1 4.1862 7.2996 0.7409 36 1 5.3123 9.4788 0.8986 37 1 7.4171 9.8738 -0.3087 38 1 8.8701 9.0130 -2.2110 39 1 12.1395 4.4347 -2.4851 40 1 7.2899 5.8900 -1.8604 41 1 1.2460 4.3898 0.0069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184499326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -65.094271 kcal Electronic energy + Delta-G solvation = -27697.471283 eV Core-core repulsion = 23541.903145 eV Total energy + Delta-G solvation = -4155.568138 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.16243 -41.22764 -40.39064 -38.94075 -38.44514 -36.08784 -35.32670 -34.55552 -33.45131 -32.23658 -31.06110 -30.21118 -28.29265 -28.08154 -25.52870 -24.76970 -23.97245 -23.55920 -21.98318 -21.33616 -19.84364 -19.44752 -19.16955 -18.38288 -17.93179 -17.57294 -17.10855 -16.94581 -16.93626 -16.25466 -16.06291 -15.70551 -15.56431 -15.34529 -15.22538 -14.82274 -14.56759 -14.49542 -14.43155 -14.25546 -13.76939 -13.48251 -13.21458 -12.84698 -12.78972 -12.78050 -12.69319 -12.49426 -12.40269 -12.01403 -11.65575 -11.40714 -11.13844 -10.94657 -10.87633 -10.55027 -10.06417 -9.81735 -9.06638 -8.85619 -8.39238 -6.97585 -0.29333 0.04642 0.15896 0.50887 1.37035 1.37552 1.56204 1.72012 1.76180 2.14092 2.18789 2.36705 2.65660 2.87794 2.97711 3.25882 3.50741 3.56538 3.76875 3.91429 4.02288 4.04145 4.19166 4.33789 4.46100 4.46245 4.52399 4.57413 4.60448 4.71162 4.79495 4.91649 4.99835 5.08372 5.22890 5.33832 5.42255 5.43926 5.47477 5.76763 5.82343 6.14198 6.16919 6.29854 6.33673 6.67377 6.75308 6.98829 7.31728 8.33628 8.54954 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.002383 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.076558 B =11746.096464 C =13520.374775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.320 6.320 3 C 0.295 3.705 4 C -0.176 4.176 5 C -0.060 4.060 6 C 0.055 3.945 7 N -0.640 5.640 8 C 0.559 3.441 9 O -0.565 6.565 10 C -0.135 4.135 11 C -0.104 4.104 12 C -0.090 4.090 13 C -0.131 4.131 14 C 0.146 3.854 15 N -0.694 5.694 16 C 0.526 3.474 17 O -0.608 6.608 18 C -0.564 4.564 19 H 0.096 0.904 20 C 0.025 3.975 21 N -0.816 5.816 22 Si 1.003 2.997 23 H -0.242 1.242 24 H -0.267 1.267 25 H -0.271 1.271 26 C -0.103 4.103 27 C 0.133 3.867 28 N -0.525 5.525 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.152 0.848 33 H 0.126 0.874 34 H 0.433 0.567 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.154 0.846 38 H 0.410 0.590 39 H 0.276 0.724 40 H 0.085 0.915 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.708 3.757 7.693 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.228 6.228 3 C 0.116 3.884 4 C -0.197 4.197 5 C -0.087 4.087 6 C -0.041 4.041 7 N -0.289 5.289 8 C 0.350 3.650 9 O -0.443 6.443 10 C -0.139 4.139 11 C -0.123 4.123 12 C -0.108 4.108 13 C -0.152 4.152 14 C 0.048 3.952 15 N -0.339 5.339 16 C 0.333 3.667 17 O -0.494 6.494 18 C -0.600 4.600 19 H 0.114 0.886 20 C -0.191 4.191 21 N -0.445 5.445 22 Si 0.822 3.178 23 H -0.164 1.164 24 H -0.191 1.191 25 H -0.196 1.196 26 C -0.126 4.126 27 C -0.026 4.026 28 N -0.249 5.249 29 H 0.139 0.861 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.170 0.830 33 H 0.144 0.856 34 H 0.275 0.725 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.172 0.828 38 H 0.246 0.754 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -22.163 1.860 7.595 23.502 hybrid contribution 1.902 0.222 -0.703 2.039 sum -20.262 2.082 6.892 21.503 Atomic orbital electron populations 1.23099 0.75568 1.04742 1.02489 1.86246 1.24616 1.23972 1.87917 1.19887 0.89354 0.85238 0.93908 1.21073 0.92378 0.99185 1.07034 1.21451 1.00853 0.91486 0.94925 1.18715 0.93710 0.85518 1.06180 1.42957 1.23505 1.10359 1.52074 1.18733 0.80457 0.87864 0.77957 1.90816 1.65625 1.46720 1.41143 1.19562 0.96373 0.94249 1.03677 1.21546 1.01097 0.91928 0.97766 1.21368 0.93620 0.97663 0.98137 1.21546 0.98388 0.99348 0.95927 1.18174 0.87219 0.94837 0.94922 1.43681 1.16867 1.15460 1.57918 1.18810 0.83858 0.82559 0.81522 1.90644 1.78499 1.27663 1.52551 1.21455 1.05353 1.01579 1.31607 0.88566 1.27093 1.02802 0.93457 0.95726 1.70186 1.34921 1.03838 1.35546 0.84889 0.75370 0.80162 0.77390 1.16414 1.19149 1.19631 1.21093 0.94054 0.97425 0.99992 1.22721 0.89899 0.95189 0.94771 1.67357 1.39951 0.98471 1.19079 0.86053 0.91938 0.92461 0.82984 0.85606 0.72511 0.80988 0.80105 0.82842 0.75352 0.91359 0.89697 0.77838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 113.37 1.18 1.70 16 2 O -0.32 -7.22 10.48 -90.85 -0.95 -8.17 16 3 C 0.30 7.36 7.49 84.80 0.63 8.00 16 4 C -0.18 -4.67 10.03 22.45 0.23 -4.44 16 5 C -0.06 -1.77 8.76 22.57 0.20 -1.57 16 6 C 0.06 1.36 6.27 38.21 0.24 1.60 16 7 N -0.64 -14.60 5.30 -305.69 -1.62 -16.22 16 8 C 0.56 19.45 7.52 86.78 0.65 20.10 16 9 O -0.56 -26.04 14.17 -3.93 -0.06 -26.09 16 10 C -0.13 -4.61 5.87 -20.10 -0.12 -4.73 16 11 C -0.10 -2.22 9.54 22.56 0.22 -2.00 16 12 C -0.09 -1.76 10.02 22.21 0.22 -1.54 16 13 C -0.13 -3.60 9.96 22.47 0.22 -3.38 16 14 C 0.15 5.92 6.24 38.25 0.24 6.16 16 15 N -0.69 -31.42 5.32 -307.63 -1.64 -33.05 16 16 C 0.53 30.75 7.46 86.30 0.64 31.39 16 17 O -0.61 -41.46 12.80 -4.49 -0.06 -41.52 16 18 C -0.56 -31.72 9.54 24.79 0.24 -31.48 16 19 H 0.10 4.74 7.85 -2.91 -0.02 4.72 16 20 C 0.03 1.40 5.50 85.32 0.47 1.87 16 21 N -0.82 -50.75 11.82 21.85 0.26 -50.49 16 22 Si 1.00 40.85 29.56 68.60 2.03 42.88 16 23 H -0.24 -8.90 7.11 99.48 0.71 -8.20 16 24 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 C -0.10 -4.72 8.18 22.69 0.19 -4.53 16 27 C 0.13 2.54 11.11 84.78 0.94 3.48 16 28 N -0.53 -11.80 9.20 -308.41 -2.84 -14.64 16 29 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 0.86 8.10 -2.38 -0.02 0.85 16 31 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 32 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.13 4.45 6.62 -2.92 -0.02 4.43 16 34 H 0.43 5.42 6.87 -92.71 -0.64 4.78 16 35 H 0.17 1.72 6.41 -2.91 -0.02 1.70 16 36 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.41 15.15 8.80 -92.71 -0.82 14.34 16 39 H 0.28 15.58 8.29 -92.71 -0.77 14.81 16 40 H 0.08 4.99 6.12 -2.91 -0.02 4.97 16 41 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -92.85 361.40 1.18 -91.67 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.33 Total: 35.03 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 6.39 Total: 20.62 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -5.83 Total: -114.41 kcal Atomic # 8 Polarization: -74.72 SS G_CDS: -1.07 Total: -75.79 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -92.85 1.18 -91.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184499326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.573 kcal (2) G-P(sol) polarization free energy of solvation -92.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds