Wall clock time and date at job start Sat Apr 11 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42106 * 110.53714 * 2 1 4 4 O 1.42100 * 110.54202 * 223.25182 * 2 1 3 5 5 N 1.65598 * 104.45006 * 111.62170 * 2 1 3 6 6 C 1.46498 * 119.99998 * 65.00418 * 5 2 1 7 7 C 1.52998 * 109.47375 * 164.99752 * 6 5 2 8 8 C 1.50702 * 109.47215 * 180.02562 * 7 6 5 9 9 O 1.21282 * 120.00036 * 5.23182 * 8 7 6 10 10 N 1.34775 * 119.99767 * 185.23796 * 8 7 6 11 11 C 1.46495 * 120.00058 * 4.91802 * 10 8 7 12 12 C 1.50702 * 109.47450 * 84.49774 * 11 10 8 13 13 H 1.08000 * 119.99423 * 354.80751 * 12 11 10 14 14 C 1.37876 * 119.99865 * 174.81033 * 12 11 10 15 15 N 1.31516 * 119.99723 * 185.34444 * 14 12 11 16 16 Si 1.86801 * 120.00284 * 5.34715 * 14 12 11 17 17 H 1.48496 * 109.47219 * 84.71347 * 16 14 12 18 18 H 1.48497 * 109.47094 * 204.71624 * 16 14 12 19 19 H 1.48500 * 109.46834 * 324.71070 * 16 14 12 20 20 C 1.46501 * 119.99611 * 184.91084 * 10 8 7 21 21 C 1.50693 * 109.47602 * 269.99918 * 20 10 8 22 22 C 1.38674 * 120.42282 * 269.72266 * 21 20 10 23 23 C 1.38623 * 118.42226 * 179.78142 * 22 21 20 24 24 C 1.38232 * 119.16118 * 0.51362 * 23 22 21 25 25 N 1.31851 * 120.76286 * 359.73115 * 24 23 22 26 26 C 1.31886 * 121.72405 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47456 * 308.37277 * 1 2 3 28 28 H 1.08996 * 109.47400 * 68.37589 * 1 2 3 29 29 H 1.09004 * 109.47102 * 188.37611 * 1 2 3 30 30 H 0.96999 * 120.00461 * 245.00153 * 5 2 1 31 31 H 1.09006 * 109.47142 * 44.99497 * 6 5 2 32 32 H 1.09000 * 109.47167 * 284.99903 * 6 5 2 33 33 H 1.08995 * 109.46748 * 59.99777 * 7 6 5 34 34 H 1.09000 * 109.47096 * 300.00195 * 7 6 5 35 35 H 1.09003 * 109.47224 * 324.49173 * 11 10 8 36 36 H 1.09004 * 109.46727 * 204.49318 * 11 10 8 37 37 H 0.97002 * 120.00076 * 179.97438 * 15 14 12 38 38 H 1.09007 * 109.47314 * 30.00742 * 20 10 8 39 39 H 1.09001 * 109.46829 * 150.00121 * 20 10 8 40 40 H 1.08000 * 120.78444 * 0.02597 * 22 21 20 41 41 H 1.08002 * 120.41973 * 180.21968 * 23 22 21 42 42 H 1.07995 * 119.61498 * 179.74504 * 24 23 22 43 43 H 1.08006 * 119.61808 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 7 2.2272 -0.5909 1.4908 6 6 1.8909 -1.9705 1.8508 7 6 2.6876 -2.3829 3.0902 8 6 2.3421 -3.8024 3.4602 9 8 1.6113 -4.4547 2.7451 10 7 2.8451 -4.3468 4.5858 11 6 3.6391 -3.5273 5.5044 12 6 2.7187 -2.7816 6.4359 13 1 1.6490 -2.8397 6.2990 14 6 3.2422 -2.0252 7.4629 15 7 2.4399 -1.4602 8.3385 16 14 5.0911 -1.8028 7.6107 17 1 5.5253 -0.6783 6.7434 18 1 5.4424 -1.5037 9.0221 19 1 5.7752 -3.0498 7.1840 20 6 2.5976 -5.7582 4.8906 21 6 1.3307 -5.8834 5.6970 22 6 1.3730 -5.8403 7.0824 23 6 0.1822 -5.9548 7.7827 24 6 -0.9982 -6.1180 7.0822 25 7 -1.0001 -6.1596 5.7643 26 6 0.1128 -6.0481 5.0654 27 1 -0.3634 0.6379 0.8057 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3633 -1.0167 0.1497 30 1 2.6920 -0.0236 2.1256 31 1 2.1395 -2.6333 1.0219 32 1 0.8244 -2.0405 2.0647 33 1 2.4390 -1.7202 3.9190 34 1 3.7542 -2.3129 2.8763 35 1 4.2340 -2.8143 4.9335 36 1 4.3009 -4.1700 6.0850 37 1 2.8082 -0.9283 9.0613 38 1 2.4935 -6.3180 3.9610 39 1 3.4340 -6.1582 5.4638 40 1 2.3110 -5.7163 7.6032 41 1 0.1773 -5.9219 8.8622 42 1 -1.9297 -6.2121 7.6205 43 1 0.0718 -6.0865 3.9868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195359801.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:44 Heat of formation + Delta-G solvation = -95.345329 kcal Electronic energy + Delta-G solvation = -27915.014215 eV Core-core repulsion = 23893.578244 eV Total energy + Delta-G solvation = -4021.435971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32511 -40.40940 -38.15444 -37.10974 -36.98262 -36.45475 -34.66543 -33.57978 -32.64762 -31.08317 -30.25131 -29.87096 -27.38832 -24.83923 -24.38548 -23.99292 -22.80871 -20.62214 -19.80049 -19.04267 -18.57621 -18.10642 -17.88209 -17.33641 -17.18751 -16.94432 -16.78908 -16.71790 -16.01935 -15.90730 -15.50401 -14.91087 -14.77597 -14.62346 -14.17328 -14.09459 -13.97098 -13.91013 -13.86061 -13.73032 -13.38138 -13.24665 -13.18788 -13.06061 -12.74778 -12.62273 -12.53915 -12.42049 -12.25576 -11.99202 -11.93713 -11.64180 -10.85410 -10.73344 -10.53569 -10.40017 -10.38027 -9.86728 -9.41006 -8.21670 -6.26746 -0.64180 0.22937 0.47046 1.44453 1.47297 1.53326 1.71478 1.78680 2.37167 2.39364 2.89588 3.03025 3.13614 3.30038 3.61777 3.70205 3.84449 3.99139 4.04377 4.07634 4.18216 4.19289 4.21263 4.23267 4.51903 4.58357 4.66587 4.67835 4.77225 4.85072 4.89405 4.94630 4.96734 5.00868 5.18119 5.30951 5.45145 5.51541 5.68393 5.88313 6.08702 6.27353 6.61468 6.79961 7.08589 7.28035 7.40537 8.93579 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.003838 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.559529 B = 7293.949928 C = 9074.869915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.657 4.657 2 S 2.630 3.370 3 O -0.996 6.996 4 O -0.998 6.998 5 N -1.118 6.118 6 C 0.136 3.864 7 C -0.146 4.146 8 C 0.519 3.481 9 O -0.579 6.579 10 N -0.591 5.591 11 C 0.211 3.789 12 C -0.519 4.519 13 H 0.029 0.971 14 C 0.026 3.974 15 N -0.939 5.939 16 Si 0.930 3.070 17 H -0.265 1.265 18 H -0.296 1.296 19 H -0.238 1.238 20 C 0.161 3.839 21 C -0.150 4.150 22 C -0.047 4.047 23 C -0.179 4.179 24 C 0.083 3.917 25 N -0.517 5.517 26 C 0.100 3.900 27 H 0.146 0.854 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.424 0.576 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.136 0.864 41 H 0.150 0.850 42 H 0.177 0.823 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -3.186 -7.988 8.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.810 4.810 2 S 2.726 3.274 3 O -0.987 6.987 4 O -0.988 6.988 5 N -0.878 5.878 6 C 0.009 3.991 7 C -0.187 4.187 8 C 0.308 3.692 9 O -0.461 6.461 10 N -0.320 5.320 11 C 0.089 3.911 12 C -0.558 4.558 13 H 0.048 0.952 14 C -0.173 4.173 15 N -0.579 5.579 16 Si 0.754 3.246 17 H -0.190 1.190 18 H -0.223 1.223 19 H -0.161 1.161 20 C 0.038 3.962 21 C -0.153 4.153 22 C -0.074 4.074 23 C -0.198 4.198 24 C -0.073 4.073 25 N -0.226 5.226 26 C -0.057 4.057 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.259 0.741 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.154 0.846 41 H 0.168 0.832 42 H 0.194 0.806 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.170 -3.391 -9.460 10.117 hybrid contribution 0.855 0.810 1.852 2.194 sum -0.315 -2.581 -7.608 8.040 Atomic orbital electron populations 1.30355 1.23908 1.13291 1.13451 1.04006 0.78911 0.72193 0.72286 1.93568 1.79886 1.39108 1.86146 1.93561 1.79046 1.62562 1.63628 1.55386 1.74923 1.21091 1.36392 1.20943 0.99446 0.81332 0.97385 1.21802 1.03492 0.93776 0.99594 1.20691 0.79071 0.89212 0.80257 1.90599 1.37976 1.64305 1.53224 1.47980 1.52088 1.10698 1.21244 1.19768 0.91078 0.91314 0.88959 1.21319 0.93311 1.28666 1.12464 0.95217 1.25619 1.02011 0.94995 0.94672 1.70061 1.37297 1.34786 1.15733 0.86015 0.80723 0.80577 0.77304 1.19021 1.22295 1.16076 1.20343 0.94028 0.82411 0.99385 1.21270 0.97587 1.01364 0.95080 1.21635 0.99490 0.92555 0.93712 1.22359 0.93455 1.01564 1.02439 1.23130 0.99045 0.95304 0.89862 1.67657 1.31196 1.14260 1.09467 1.22748 0.87679 0.94991 1.00235 0.83556 0.83276 0.84113 0.74092 0.89926 0.90767 0.87790 0.86704 0.93263 0.93180 0.92697 0.88846 0.87750 0.84649 0.83224 0.80645 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -8.13 10.89 113.37 1.23 -6.90 16 2 S 2.63 53.77 6.10 -56.49 -0.34 53.43 16 3 O -1.00 -26.77 18.08 -127.65 -2.31 -29.08 16 4 O -1.00 -27.98 17.50 -127.65 -2.23 -30.22 16 5 N -1.12 -23.56 5.89 -187.49 -1.10 -24.67 16 6 C 0.14 3.37 5.44 86.38 0.47 3.84 16 7 C -0.15 -4.17 4.33 29.85 0.13 -4.04 16 8 C 0.52 17.68 7.60 87.66 0.67 18.34 16 9 O -0.58 -21.36 14.87 -3.04 -0.05 -21.41 16 10 N -0.59 -20.07 2.45 -830.50 -2.04 -22.11 16 11 C 0.21 7.66 4.02 85.63 0.34 8.01 16 12 C -0.52 -24.12 9.33 25.60 0.24 -23.88 16 13 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 14 C 0.03 1.28 5.47 84.65 0.46 1.74 16 15 N -0.94 -51.70 13.96 21.45 0.30 -51.40 16 16 Si 0.93 36.43 27.48 68.60 1.88 38.31 16 17 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.30 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.24 -8.18 6.58 99.48 0.65 -7.52 16 20 C 0.16 4.87 5.56 85.63 0.48 5.35 16 21 C -0.15 -5.04 5.48 -19.78 -0.11 -5.15 16 22 C -0.05 -1.58 9.86 22.47 0.22 -1.36 16 23 C -0.18 -5.56 10.11 22.36 0.23 -5.33 16 24 C 0.08 2.60 11.18 84.69 0.95 3.55 16 25 N -0.52 -18.46 10.36 -195.84 -2.03 -20.49 16 26 C 0.10 3.56 10.76 84.67 0.91 4.47 16 27 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.42 8.23 8.62 -96.74 -0.83 7.40 16 31 H 0.08 2.14 7.59 -2.38 -0.02 2.12 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 3.28 7.38 -2.39 -0.02 3.26 16 34 H 0.11 2.84 7.82 -2.39 -0.02 2.82 16 35 H 0.05 1.65 6.34 -2.39 -0.02 1.63 16 36 H 0.05 1.72 6.80 -2.39 -0.02 1.71 16 37 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.09 2.66 7.45 -2.38 -0.02 2.64 16 39 H 0.10 2.63 7.81 -2.39 -0.02 2.61 16 40 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.18 4.24 8.06 -2.91 -0.02 4.22 16 43 H 0.15 5.31 7.41 -2.91 -0.02 5.29 16 Total: -1.00 -73.17 377.84 -1.55 -74.72 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.15 Total: 34.26 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.22 Total: -1.36 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -4.87 Total: -118.66 kcal Atomic # 8 Polarization: -76.12 SS G_CDS: -4.59 Total: -80.70 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 1.88 Total: 38.31 kcal Atomic # 16 Polarization: 53.77 SS G_CDS: -0.34 Total: 53.43 kcal Total: -73.17 -1.55 -74.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195359801.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.626 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds