Wall clock time and date at job start Sat Apr 11 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35543 * 117.00117 * 2 1 4 4 C 1.39000 * 120.47161 * 179.97438 * 3 2 1 5 5 C 1.39149 * 118.28433 * 180.02562 * 4 3 2 6 6 N 1.38965 * 120.48963 * 179.97438 * 5 4 3 7 7 C 1.34767 * 119.99921 * 185.17652 * 6 5 4 8 8 O 1.21717 * 120.00667 * 354.86224 * 7 6 5 9 9 C 1.46189 * 120.00069 * 174.86477 * 7 6 5 10 10 C 1.35063 * 120.00310 * 172.69196 * 9 7 6 11 11 C 1.46948 * 119.99926 * 345.83813 * 10 9 7 12 12 C 1.40032 * 120.10012 * 317.94430 * 11 10 9 13 13 C 1.37117 * 119.89107 * 179.71790 * 12 11 10 14 14 C 1.39178 * 120.10582 * 0.55444 * 13 12 11 15 15 O 1.35570 * 119.89968 * 179.73851 * 14 13 12 16 16 C 1.34776 * 116.99990 * 186.27985 * 15 14 13 17 17 H 1.08005 * 120.00243 * 5.59843 * 16 15 14 18 18 C 1.38722 * 120.00193 * 185.59646 * 16 15 14 19 19 N 1.31505 * 119.99605 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00244 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47235 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47083 * 120.00094 * 20 18 16 23 23 H 1.48503 * 109.47022 * 239.99670 * 20 18 16 24 24 C 1.39180 * 120.20188 * 359.72384 * 14 13 12 25 25 C 1.37117 * 120.10553 * 359.97438 * 24 14 13 26 26 N 1.33105 * 119.02384 * 0.25610 * 5 4 3 27 27 C 1.31716 * 120.84048 * 359.47873 * 26 5 4 28 28 N 1.31786 * 121.89382 * 0.53539 * 27 26 5 29 29 H 1.09003 * 109.47283 * 60.00442 * 1 2 3 30 30 H 1.09007 * 109.47241 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47519 * 300.00253 * 1 2 3 32 32 H 1.08002 * 120.85582 * 359.97438 * 4 3 2 33 33 H 0.97003 * 119.99612 * 5.45643 * 6 5 4 34 34 H 1.08002 * 119.99649 * 352.69788 * 9 7 6 35 35 H 1.07996 * 120.00188 * 165.83647 * 10 9 7 36 36 H 1.08000 * 120.05107 * 359.97438 * 12 11 10 37 37 H 1.08001 * 119.94981 * 180.27572 * 13 12 11 38 38 H 0.97003 * 120.00214 * 180.02562 * 19 18 16 39 39 H 1.08005 * 119.94499 * 179.97438 * 24 14 13 40 40 H 1.07998 * 120.05577 * 180.02562 * 25 24 14 41 41 H 1.08004 * 119.05078 * 180.24619 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4318 1.2918 0.0005 5 6 4.0157 2.5548 0.0011 6 7 5.3986 2.6923 0.0021 7 6 5.9541 3.9156 0.1079 8 8 5.2477 4.9069 0.1084 9 6 7.4051 4.0521 0.2222 10 6 7.9737 5.2765 0.1796 11 6 7.1952 6.4323 -0.2867 12 6 6.3571 6.3107 -1.4019 13 6 5.6282 7.3904 -1.8299 14 6 5.7291 8.6088 -1.1647 15 8 5.0106 9.6750 -1.5946 16 6 5.2489 10.8567 -0.9919 17 1 6.0466 10.9429 -0.2688 18 6 4.4699 11.9622 -1.3003 19 7 3.4984 11.8571 -2.1804 20 14 4.8007 13.6002 -0.4654 21 1 5.9391 13.4546 0.4769 22 1 5.1344 14.6204 -1.4917 23 1 3.5911 14.0278 0.2825 24 6 6.5653 8.7358 -0.0594 25 6 7.2933 7.6600 0.3796 26 7 3.2303 3.6295 0.0062 27 6 1.9189 3.5073 0.0005 28 7 1.3293 2.3287 0.0000 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0408 0.3999 0.0014 33 1 5.9639 1.9080 -0.0773 34 1 8.0224 3.1738 0.3405 35 1 9.0004 5.4061 0.4883 36 1 6.2818 5.3669 -1.9216 37 1 4.9781 7.2965 -2.6872 38 1 2.9538 12.6303 -2.3963 39 1 6.6407 9.6834 0.4535 40 1 7.9415 7.7594 1.2377 41 1 1.3091 4.3988 0.0009 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254982878.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:47 Heat of formation + Delta-G solvation = 27.159290 kcal Electronic energy + Delta-G solvation = -27971.772409 eV Core-core repulsion = 23820.204685 eV Total energy + Delta-G solvation = -4151.567724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43536 -39.91737 -38.92663 -38.38563 -36.65275 -35.18130 -33.16054 -32.43284 -32.13335 -31.34742 -30.20377 -28.23365 -27.58124 -25.54057 -24.56231 -24.49599 -22.55245 -21.79051 -21.11647 -19.72316 -18.97726 -17.97803 -17.84341 -17.21068 -16.59367 -16.42399 -16.16661 -15.56357 -15.23821 -15.02052 -14.62386 -14.59334 -14.40284 -14.14813 -14.00547 -13.66519 -13.54904 -13.30400 -13.00939 -12.63565 -12.31519 -12.22949 -11.94383 -11.71101 -11.45659 -11.24688 -11.04793 -10.80565 -10.75295 -10.59712 -10.40968 -9.95121 -9.50105 -9.47966 -9.19520 -9.03491 -8.87683 -8.72174 -8.00737 -6.89796 -6.48549 -4.03450 0.75807 1.05023 1.32871 2.39930 2.46339 2.65831 3.00439 3.12657 3.13532 3.19021 3.44690 3.87080 3.95245 3.99371 4.21625 4.67556 4.75035 4.88518 4.97163 5.02228 5.08412 5.10755 5.16734 5.24701 5.30406 5.33812 5.52014 5.70428 5.79706 5.81296 6.17422 6.23972 6.33542 6.42412 6.55824 6.68048 6.75187 6.91124 7.01470 7.10535 7.31119 7.36052 7.43294 7.48075 7.89574 7.98097 8.10435 8.36848 8.97028 9.68754 10.69147 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002584 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.780277 B =10834.544814 C =12585.040411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.378 3.622 4 C -0.295 4.295 5 C 0.438 3.562 6 N -0.656 5.656 7 C 0.527 3.473 8 O -0.433 6.433 9 C -0.276 4.276 10 C 0.041 3.959 11 C -0.197 4.197 12 C 0.006 3.994 13 C -0.196 4.196 14 C 0.173 3.827 15 O -0.169 6.169 16 C -0.389 4.389 17 H 0.095 0.905 18 C 0.039 3.961 19 N -0.857 5.857 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.248 4.248 25 C -0.037 4.037 26 N -0.524 5.524 27 C 0.366 3.634 28 N -0.601 5.601 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.149 0.851 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.271 0.729 39 H 0.126 0.874 40 H 0.106 0.894 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -22.206 5.079 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.209 6.209 3 C 0.193 3.807 4 C -0.322 4.322 5 C 0.199 3.801 6 N -0.303 5.303 7 C 0.316 3.684 8 O -0.301 6.301 9 C -0.298 4.298 10 C 0.022 3.978 11 C -0.198 4.198 12 C -0.013 4.013 13 C -0.215 4.215 14 C 0.118 3.882 15 O -0.071 6.071 16 C -0.465 4.465 17 H 0.112 0.888 18 C -0.166 4.166 19 N -0.491 5.491 20 Si 0.767 3.233 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.268 4.268 25 C -0.056 4.056 26 N -0.248 5.248 27 C 0.077 3.923 28 N -0.334 5.334 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.253 0.747 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.439 -20.721 4.821 21.323 hybrid contribution 0.628 -0.459 0.494 0.921 sum 2.067 -21.180 5.314 21.934 Atomic orbital electron populations 1.22934 0.76596 1.03122 1.02961 1.86198 1.23420 1.24218 1.87079 1.19640 0.88735 0.85012 0.87303 1.21006 0.93409 0.98399 1.19400 1.18405 0.85777 0.88452 0.87482 1.43789 1.02967 1.11701 1.71868 1.18797 0.89714 0.82153 0.77704 1.91120 1.62720 1.34778 1.41435 1.22437 0.92355 0.98621 1.16363 1.22375 0.97676 0.91564 0.86222 1.18300 1.06548 0.93334 1.01653 1.20331 0.91517 0.95575 0.93867 1.19884 1.05977 0.91770 1.03905 1.19564 0.89655 0.88066 0.90952 1.83924 1.53769 1.14857 1.54586 1.21453 1.17163 0.83578 1.24294 0.88800 1.25349 0.95105 0.99394 0.96750 1.70032 1.17825 1.31176 1.30058 0.85626 0.78686 0.80151 0.78859 1.19001 1.20082 1.20070 1.20857 1.04584 1.00114 1.01216 1.20636 0.96567 0.91428 0.96931 1.68640 1.05767 1.30819 1.19565 1.24784 0.87647 0.93671 0.86160 1.68157 1.41629 0.99157 1.24502 0.91895 0.88424 0.91953 0.83332 0.74682 0.85723 0.85746 0.88190 0.86807 0.91924 0.85603 0.87546 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.41 101.05 1.05 1.35 16 2 O -0.30 -3.19 10.49 -18.32 -0.19 -3.38 16 3 C 0.38 4.56 7.52 -16.78 -0.13 4.44 16 4 C -0.29 -3.25 9.99 -38.96 -0.39 -3.64 16 5 C 0.44 5.78 7.45 -154.45 -1.15 4.63 16 6 N -0.66 -7.37 5.37 -12.66 -0.07 -7.44 16 7 C 0.53 7.60 6.65 -13.07 -0.09 7.51 16 8 O -0.43 -8.34 10.75 5.17 0.06 -8.28 16 9 C -0.28 -3.21 9.86 -37.52 -0.37 -3.58 16 10 C 0.04 0.54 9.80 -37.18 -0.36 0.18 16 11 C -0.20 -3.53 4.51 -105.03 -0.47 -4.01 16 12 C 0.01 0.11 6.69 -39.32 -0.26 -0.15 16 13 C -0.20 -4.46 9.95 -39.64 -0.39 -4.85 16 14 C 0.17 4.35 6.66 -38.88 -0.26 4.09 16 15 O -0.17 -4.94 9.74 0.75 0.01 -4.93 16 16 C -0.39 -10.96 9.43 30.91 0.29 -10.67 16 17 H 0.09 2.45 5.29 -52.48 -0.28 2.17 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 20 Si 0.94 20.56 29.55 -169.99 -5.02 15.53 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.25 -5.59 9.09 -39.64 -0.36 -5.95 16 25 C -0.04 -0.71 9.77 -39.32 -0.38 -1.09 16 26 N -0.52 -8.35 8.04 -13.81 -0.11 -8.46 16 27 C 0.37 5.05 12.28 -92.23 -1.13 3.92 16 28 N -0.60 -7.77 9.38 -14.71 -0.14 -7.91 16 29 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.42 2.80 8.70 -40.82 -0.36 2.45 16 34 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.10 1.80 7.04 -52.49 -0.37 1.43 16 37 H 0.11 2.55 8.06 -52.49 -0.42 2.13 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.13 2.81 5.70 -52.48 -0.30 2.51 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.20 2.36 8.06 -52.48 -0.42 1.93 16 LS Contribution 361.64 15.07 5.45 5.45 Total: -1.00 -35.79 361.64 -8.01 -43.80 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.24 Total: 6.95 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -4.51 Total: -6.85 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.44 Total: -48.29 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.13 Total: -16.59 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.79 -8.01 -43.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254982878.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.956 kcal (2) G-P(sol) polarization free energy of solvation -35.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds