Wall clock time and date at job start Sat Apr 11 2020 06:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35956 * 116.99718 * 2 1 4 4 C 1.38074 * 120.00083 * 0.26043 * 3 2 1 5 5 C 1.39982 * 119.83668 * 180.22463 * 4 3 2 6 6 C 1.46952 * 120.07951 * 179.78815 * 5 4 3 7 7 C 1.35065 * 120.00289 * 317.90090 * 6 5 4 8 8 C 1.46197 * 119.99642 * 345.81729 * 7 6 5 9 9 O 1.21728 * 119.99879 * 352.73719 * 8 7 6 10 10 N 1.34773 * 119.99726 * 172.73610 * 8 7 6 11 11 C 1.39273 * 119.99960 * 185.12935 * 10 8 7 12 12 C 1.39267 * 120.08757 * 174.79920 * 11 10 8 13 13 N 1.31949 * 119.89427 * 180.02562 * 12 11 10 14 14 C 1.32252 * 120.08402 * 0.02562 * 13 12 11 15 15 C 1.38210 * 120.17260 * 359.95449 * 14 13 12 16 16 N 1.32217 * 120.10783 * 0.04880 * 15 14 13 17 17 C 1.40037 * 119.84584 * 359.51513 * 5 4 3 18 18 C 1.37644 * 119.99461 * 0.25343 * 17 5 4 19 19 C 1.39059 * 120.16419 * 359.97410 * 18 17 5 20 20 O 1.35618 * 119.92236 * 180.02562 * 19 18 17 21 21 C 1.34754 * 117.00006 * 6.38852 * 20 19 18 22 22 H 1.08000 * 119.99824 * 5.52187 * 21 20 19 23 23 C 1.38703 * 120.00293 * 185.52462 * 21 20 19 24 24 N 1.31521 * 120.00045 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00440 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46832 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47266 * 119.99702 * 25 23 21 28 28 H 1.48495 * 109.47541 * 240.00417 * 25 23 21 29 29 H 1.09003 * 109.46957 * 60.00449 * 1 2 3 30 30 H 1.08998 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47226 * 299.99808 * 1 2 3 32 32 H 1.07998 * 120.08043 * 359.97438 * 4 3 2 33 33 H 1.08005 * 120.00107 * 137.90175 * 6 5 4 34 34 H 1.07994 * 120.00367 * 165.80898 * 7 6 5 35 35 H 0.97002 * 120.00080 * 5.13542 * 10 8 7 36 36 H 1.07994 * 120.04957 * 359.74329 * 12 11 10 37 37 H 1.07995 * 119.91489 * 179.97438 * 14 13 12 38 38 H 1.08001 * 119.94816 * 180.02562 * 15 14 13 39 39 H 1.07995 * 120.00310 * 180.22564 * 17 5 4 40 40 H 1.07999 * 119.91997 * 179.97438 * 18 17 5 41 41 H 0.97000 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 0.0054 5 6 1.9331 3.6148 0.0007 6 6 1.1380 4.8506 0.0017 7 6 0.0395 4.9476 -0.7782 8 6 -0.1904 3.9710 -1.8416 9 8 0.6684 3.1516 -2.1115 10 7 -1.3532 3.9780 -2.5230 11 6 -1.6163 2.9832 -3.4616 12 6 -2.8588 2.9254 -4.0879 13 7 -3.1041 1.9810 -4.9762 14 6 -2.1722 1.0902 -5.2713 15 6 -0.9379 1.1450 -4.6519 16 7 -0.6843 2.0881 -3.7607 17 6 3.3320 3.6804 0.0007 18 6 4.0752 2.5219 0.0001 19 6 3.4405 1.2846 0.0000 20 8 4.1776 0.1462 0.0000 21 6 5.5117 0.2812 0.1336 22 1 5.9396 1.2544 0.3237 23 6 6.3353 -0.8297 0.0270 24 7 5.8143 -2.0148 -0.2050 25 14 8.1848 -0.6425 0.2115 26 1 8.5151 0.7829 0.4651 27 1 8.6547 -1.4695 1.3519 28 1 8.8547 -1.0921 -1.0352 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2156 2.3143 0.0093 33 1 1.4319 5.6814 0.6261 34 1 -0.6690 5.7463 -0.6162 35 1 -2.0068 4.6760 -2.3598 36 1 -3.6218 3.6495 -3.8436 37 1 -2.3761 0.3181 -5.9984 38 1 -0.1794 0.4159 -4.8959 39 1 3.8276 4.6400 0.0007 40 1 5.1539 2.5739 -0.0003 41 1 6.3903 -2.7917 -0.2799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255034490.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:50 Heat of formation + Delta-G solvation = 33.033044 kcal Electronic energy + Delta-G solvation = -29127.582831 eV Core-core repulsion = 24976.269812 eV Total energy + Delta-G solvation = -4151.313019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35858 -39.85572 -39.09935 -37.45694 -36.39970 -35.08522 -33.96759 -33.00147 -32.16143 -30.57007 -29.39976 -28.39977 -26.64869 -25.54195 -25.11936 -24.47247 -22.73606 -21.47400 -21.13902 -19.73730 -18.20321 -18.04897 -17.68991 -17.05096 -16.92489 -16.47019 -15.90231 -15.51665 -15.20204 -15.01347 -14.68876 -14.58242 -14.19545 -14.14687 -13.75371 -13.53101 -13.38123 -13.25217 -13.05317 -12.83786 -12.18036 -11.70527 -11.61931 -11.59527 -11.51387 -11.28452 -11.05195 -10.94637 -10.69037 -10.60021 -10.46691 -10.32391 -9.84548 -9.50107 -9.23204 -8.91394 -8.70533 -8.54976 -7.55344 -6.76269 -6.45910 -3.97953 0.61843 1.02924 1.23304 2.36857 2.57347 2.73786 3.13572 3.14195 3.20004 3.39166 3.79940 3.95681 4.13051 4.13890 4.17540 4.31887 4.60485 4.89760 5.03292 5.06379 5.09634 5.13669 5.19887 5.32244 5.45502 5.57740 5.66437 5.73988 5.78345 5.91018 5.91904 6.16357 6.23206 6.38723 6.46407 6.51823 6.68688 6.96786 7.02710 7.16814 7.25478 7.33826 7.38276 7.68453 7.81038 7.95791 8.28048 8.33992 8.98184 9.70993 10.71077 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.003256 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.338022 B = 8597.238384 C = 9685.072652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.303 6.303 3 C 0.051 3.949 4 C -0.087 4.087 5 C -0.163 4.163 6 C 0.037 3.963 7 C -0.273 4.273 8 C 0.523 3.477 9 O -0.438 6.438 10 N -0.659 5.659 11 C 0.321 3.679 12 C 0.009 3.991 13 N -0.415 5.415 14 C -0.001 4.001 15 C 0.093 3.907 16 N -0.429 5.429 17 C -0.061 4.061 18 C -0.229 4.229 19 C 0.154 3.846 20 O -0.155 6.155 21 C -0.388 4.388 22 H 0.095 0.905 23 C 0.039 3.961 24 N -0.851 5.851 25 Si 0.942 3.058 26 H -0.265 1.265 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.415 0.585 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.767 12.509 -3.696 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.217 6.217 3 C 0.006 3.994 4 C -0.106 4.106 5 C -0.164 4.164 6 C 0.018 3.982 7 C -0.295 4.295 8 C 0.313 3.687 9 O -0.306 6.306 10 N -0.307 5.307 11 C 0.086 3.914 12 C -0.157 4.157 13 N -0.128 5.128 14 C -0.161 4.161 15 C -0.068 4.068 16 N -0.150 5.150 17 C -0.080 4.080 18 C -0.249 4.249 19 C 0.098 3.902 20 O -0.057 6.057 21 C -0.464 4.464 22 H 0.112 0.888 23 C -0.166 4.166 24 N -0.484 5.484 25 Si 0.767 3.233 26 H -0.190 1.190 27 H -0.201 1.201 28 H -0.201 1.201 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.252 0.748 36 H 0.183 0.817 37 H 0.185 0.815 38 H 0.189 0.811 39 H 0.127 0.873 40 H 0.151 0.849 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.923 11.240 -3.841 19.074 hybrid contribution 0.199 0.743 0.004 0.770 sum -14.724 11.984 -3.837 19.368 Atomic orbital electron populations 1.22794 0.80749 1.02451 0.99939 1.86204 1.19077 1.26494 1.89916 1.17941 0.89275 0.84432 1.07745 1.20489 0.97411 0.90725 1.01995 1.18045 0.92824 0.91360 1.14208 1.22360 0.90268 0.94603 0.90989 1.22469 1.02789 1.03275 1.00933 1.18803 0.81216 0.85452 0.83263 1.91126 1.40396 1.35424 1.63622 1.43759 1.21358 1.27286 1.38284 1.19625 0.91212 0.90120 0.90402 1.23121 0.95417 0.99996 0.97172 1.68293 1.32502 1.01287 1.10757 1.23556 0.91368 0.99234 1.01906 1.23855 0.97023 0.95181 0.90745 1.68665 1.30513 1.02368 1.13412 1.20696 0.92150 0.97122 0.97993 1.20730 1.00396 0.90850 1.12902 1.18843 0.88246 0.87593 0.95515 1.84011 1.19598 1.25688 1.76409 1.21489 0.78813 0.96359 1.49739 0.88794 1.25355 1.00504 0.94317 0.96444 1.70065 1.36078 0.98750 1.43531 0.85627 0.80463 0.78916 0.78310 1.18961 1.20084 1.20071 0.93746 0.89398 0.94131 0.87420 0.85548 0.85701 0.74813 0.81749 0.81451 0.81068 0.87259 0.84894 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.81 101.05 0.99 1.63 16 2 O -0.30 -7.19 10.28 -34.21 -0.35 -7.54 16 3 C 0.05 1.21 6.70 -39.12 -0.26 0.95 16 4 C -0.09 -1.74 5.70 -38.99 -0.22 -1.96 16 5 C -0.16 -2.95 4.51 -105.04 -0.47 -3.42 16 6 C 0.04 0.49 9.80 -37.18 -0.36 0.13 16 7 C -0.27 -3.16 9.86 -37.52 -0.37 -3.53 16 8 C 0.52 7.48 6.66 -13.07 -0.09 7.39 16 9 O -0.44 -8.44 10.74 5.16 0.06 -8.39 16 10 N -0.66 -7.09 5.38 -12.65 -0.07 -7.16 16 11 C 0.32 4.03 7.42 -154.51 -1.15 2.88 16 12 C 0.01 0.09 11.09 -17.12 -0.19 -0.10 16 13 N -0.41 -4.69 10.49 -12.89 -0.14 -4.82 16 14 C 0.00 -0.01 11.21 -17.38 -0.19 -0.20 16 15 C 0.09 1.16 11.22 -17.40 -0.20 0.96 16 16 N -0.43 -6.64 8.06 -12.19 -0.10 -6.74 16 17 C -0.06 -1.16 9.78 -39.12 -0.38 -1.54 16 18 C -0.23 -5.18 9.10 -39.49 -0.36 -5.54 16 19 C 0.15 3.99 6.67 -38.76 -0.26 3.73 16 20 O -0.16 -4.66 9.52 -13.94 -0.13 -4.79 16 21 C -0.39 -11.06 9.43 30.90 0.29 -10.77 16 22 H 0.09 2.45 5.29 -52.49 -0.28 2.18 16 23 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 24 N -0.85 -25.39 13.67 55.48 0.76 -24.63 16 25 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 28 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 29 H 0.04 0.78 7.67 -51.93 -0.40 0.38 16 30 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 32 H 0.11 1.98 5.27 -52.49 -0.28 1.70 16 33 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.42 2.53 8.69 -40.82 -0.35 2.17 16 36 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.13 2.94 5.71 -52.49 -0.30 2.64 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 358.54 15.07 5.40 5.40 Total: -1.00 -37.95 358.54 -7.01 -44.96 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.10 Total: 6.49 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -3.32 Total: -8.40 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.46 Total: -43.35 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.43 Total: -20.72 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.95 -7.01 -44.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255034490.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.995 kcal (2) G-P(sol) polarization free energy of solvation -37.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds