Wall clock time and date at job start Sat Apr 11 2020 06:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65600 * 120.00245 * 2 1 4 4 O 1.42098 * 106.39962 * 311.46194 * 3 2 1 5 5 O 1.42100 * 106.40111 * 178.54466 * 3 2 1 6 6 C 1.76199 * 107.21677 * 65.00229 * 3 2 1 7 7 C 1.38253 * 120.00077 * 269.95135 * 6 3 2 8 8 C 1.38204 * 119.99863 * 179.97438 * 7 6 3 9 9 C 1.38261 * 120.00515 * 0.07163 * 8 7 6 10 10 C 1.38208 * 119.99533 * 359.95684 * 9 8 7 11 11 C 1.50701 * 119.99804 * 180.02562 * 10 9 8 12 12 N 1.46504 * 109.46856 * 270.01572 * 11 10 9 13 13 C 1.34781 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21590 * 119.99689 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99955 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00043 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47207 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46994 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99898 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99866 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00023 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00166 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46882 * 89.99812 * 22 20 18 24 24 H 1.48495 * 109.47093 * 210.00290 * 22 20 18 25 25 H 1.48504 * 109.46991 * 329.99962 * 22 20 18 26 26 C 1.38220 * 119.99875 * 90.00339 * 6 3 2 27 27 H 1.08999 * 109.46431 * 299.99770 * 1 2 3 28 28 H 1.08994 * 109.47148 * 59.99555 * 1 2 3 29 29 H 1.09003 * 109.47564 * 180.02562 * 1 2 3 30 30 H 0.97009 * 119.99640 * 180.02562 * 2 1 3 31 31 H 1.08005 * 119.99943 * 0.04961 * 7 6 3 32 32 H 1.08004 * 120.00227 * 180.02562 * 8 7 6 33 33 H 1.07992 * 120.00025 * 179.97438 * 9 8 7 34 34 H 1.08990 * 109.47415 * 30.02092 * 11 10 9 35 35 H 1.09006 * 109.46768 * 150.01991 * 11 10 9 36 36 H 0.97001 * 120.00118 * 0.02562 * 12 11 10 37 37 H 0.97001 * 120.00017 * 0.02562 * 15 13 12 38 38 H 1.09000 * 109.47040 * 299.99968 * 16 15 13 39 39 H 1.08997 * 109.47093 * 59.99675 * 16 15 13 40 40 H 1.08997 * 109.46833 * 299.99394 * 17 16 15 41 41 H 1.08997 * 109.47211 * 59.99929 * 17 16 15 42 42 H 0.97003 * 119.99639 * 179.97438 * 21 20 18 43 43 H 1.08000 * 119.99660 * 0.26988 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1002 0.0346 6 6 1.9379 2.2414 1.5254 7 6 0.8594 3.1015 1.6176 8 6 0.5806 3.7343 2.8142 9 6 1.3810 3.5084 3.9187 10 6 2.4594 2.6490 3.8264 11 6 3.3315 2.4023 5.0304 12 7 4.4237 3.3786 5.0505 13 6 5.3346 3.3503 6.0435 14 8 5.2501 2.5142 6.9223 15 7 6.3390 4.2487 6.0624 16 6 7.3294 4.2177 7.1414 17 6 8.3529 5.3345 6.9266 18 6 9.3720 5.3021 8.0363 19 1 9.2970 4.5595 8.8168 20 6 10.4002 6.2205 8.0549 21 7 10.4918 7.1245 7.1040 22 14 11.6632 6.1809 9.4307 23 1 12.7914 5.2972 9.0416 24 1 12.1718 7.5544 9.6755 25 1 11.0302 5.6595 10.6688 26 6 2.7382 2.0156 2.6295 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.9500 -0.8402 -0.0004 31 1 0.2341 3.2780 0.7548 32 1 -0.2621 4.4059 2.8864 33 1 1.1633 4.0032 4.8536 34 1 2.7360 2.5044 5.9375 35 1 3.7454 1.3951 4.9789 36 1 4.4908 4.0458 4.3497 37 1 6.4061 4.9159 5.3615 38 1 6.8285 4.3625 8.0986 39 1 7.8383 3.2538 7.1399 40 1 8.8537 5.1891 5.9695 41 1 7.8443 6.2985 6.9279 42 1 11.2150 7.7708 7.1174 43 1 3.5837 1.3477 2.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273111134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:55 Heat of formation + Delta-G solvation = -85.029650 kcal Electronic energy + Delta-G solvation = -26142.797238 eV Core-core repulsion = 22121.808588 eV Total energy + Delta-G solvation = -4020.988650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17002 -39.28286 -37.66249 -36.26765 -35.53145 -35.36549 -34.53540 -32.86130 -31.85463 -31.68123 -29.46407 -26.60204 -26.40368 -24.44747 -23.80672 -22.23738 -21.05800 -20.58089 -19.95723 -18.58908 -18.06075 -17.68857 -16.88126 -16.49892 -16.40311 -16.09182 -15.89568 -15.26596 -14.95657 -14.67868 -14.49641 -14.35258 -14.12864 -13.80923 -13.54202 -13.40988 -13.30359 -13.13809 -12.76998 -12.54939 -12.49079 -12.41462 -12.26794 -12.12204 -11.68576 -11.22649 -11.17685 -11.02045 -10.62182 -10.30967 -10.19210 -10.08582 -9.86408 -9.60410 -9.41842 -9.23210 -9.09401 -8.47771 -8.25482 -6.07749 -4.10393 -0.09117 0.31766 0.69913 2.48613 2.83433 3.22003 3.30873 3.36607 3.38190 3.42088 3.55918 3.84372 4.20745 4.32586 4.41123 4.45969 4.49414 4.68829 4.70845 4.82655 4.87001 4.98782 5.16998 5.19271 5.28512 5.29318 5.40487 5.52637 5.55065 5.73492 5.96255 6.27962 6.29871 6.36857 6.40552 6.49840 6.78378 6.99312 7.20332 7.57860 7.64753 7.91335 8.26541 8.41273 8.92901 8.98119 9.54252 11.03882 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.001805 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.653324 B =15507.590594 C =15975.052404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.121 6.121 3 S 2.697 3.303 4 O -0.955 6.955 5 O -0.954 6.954 6 C -0.680 4.680 7 C -0.018 4.018 8 C -0.141 4.141 9 C -0.042 4.042 10 C -0.123 4.123 11 C 0.181 3.819 12 N -0.752 5.752 13 C 0.699 3.301 14 O -0.598 6.598 15 N -0.737 5.737 16 C 0.140 3.860 17 C 0.012 3.988 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.001 3.999 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.420 0.580 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.396 0.604 37 H 0.394 0.606 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.934 -12.098 -15.994 33.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.785 3.215 4 O -0.945 6.945 5 O -0.944 6.944 6 C -0.767 4.767 7 C -0.037 4.037 8 C -0.160 4.160 9 C -0.061 4.061 10 C -0.124 4.124 11 C 0.056 3.944 12 N -0.410 5.410 13 C 0.399 3.601 14 O -0.477 6.477 15 N -0.391 5.391 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.019 4.019 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.255 0.745 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.229 0.771 37 H 0.227 0.773 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -26.465 -12.258 -15.850 33.195 hybrid contribution 0.608 0.497 0.774 1.103 sum -25.857 -11.760 -15.076 32.159 Atomic orbital electron populations 1.21510 0.78388 1.04434 1.02042 1.55331 1.16260 1.24481 1.92022 1.01872 0.72945 0.72749 0.73886 1.93594 1.78778 1.68444 1.53714 1.93631 1.30478 1.83243 1.87025 1.30902 1.07645 1.16530 1.21630 1.20990 0.93223 0.91299 0.98216 1.21329 1.00781 1.00990 0.92851 1.21523 0.92251 0.93291 0.98988 1.20115 0.97570 0.99244 0.95510 1.19952 0.86735 0.93180 0.94488 1.45169 1.29376 1.37227 1.29194 1.16040 0.79762 0.82342 0.81937 1.90893 1.77214 1.40352 1.39209 1.45544 1.28464 1.34302 1.30761 1.21605 0.88195 1.01066 0.87406 1.19331 0.92666 0.92478 0.98040 1.21048 1.09940 1.15493 1.09443 0.92210 1.25005 0.97919 0.95268 0.96180 1.69962 1.32430 1.17957 1.32964 0.86499 0.81464 0.77226 0.82274 1.20566 1.21203 1.19738 1.20917 0.95591 0.95022 0.90380 0.92142 0.91228 0.89762 0.74540 0.84126 0.84649 0.84674 0.90520 0.90528 0.77079 0.77316 0.92757 0.92727 0.95928 0.95976 0.92868 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.24 11.14 59.85 0.67 0.90 16 2 N -1.12 -5.24 6.19 -16.64 -0.10 -5.34 16 3 S 2.70 21.91 5.74 -107.50 -0.62 21.29 16 4 O -0.96 -10.13 17.01 -57.17 -0.97 -11.11 16 5 O -0.95 -10.93 17.28 -57.17 -0.99 -11.92 16 6 C -0.68 -5.31 5.95 -39.58 -0.24 -5.54 16 7 C -0.02 -0.12 9.52 -39.59 -0.38 -0.50 16 8 C -0.14 -0.86 10.05 -39.58 -0.40 -1.26 16 9 C -0.04 -0.29 9.70 -39.58 -0.38 -0.68 16 10 C -0.12 -1.04 5.25 -104.63 -0.55 -1.59 16 11 C 0.18 1.90 5.80 -5.19 -0.03 1.87 16 12 N -0.75 -9.45 5.55 -66.41 -0.37 -9.82 16 13 C 0.70 12.19 8.57 -86.92 -0.74 11.45 16 14 O -0.60 -12.73 16.34 5.29 0.09 -12.65 16 15 N -0.74 -13.18 5.56 -65.23 -0.36 -13.54 16 16 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.00 0.01 9.18 -39.58 -0.36 -0.36 16 27 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.07 0.21 8.10 -51.93 -0.42 -0.21 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.42 1.27 8.96 -34.47 -0.31 0.96 16 31 H 0.14 0.70 7.62 -52.48 -0.40 0.30 16 32 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 35 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.40 4.12 8.48 -40.82 -0.35 3.78 16 37 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 43 H 0.14 1.19 7.61 -52.49 -0.40 0.79 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -37.99 384.68 -10.79 -48.78 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.98 Total: 3.40 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.99 Total: -5.84 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.10 Total: -54.28 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.87 Total: -35.67 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 21.91 SS G_CDS: -0.62 Total: 21.29 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.99 -10.79 -48.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273111134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.253 kcal (2) G-P(sol) polarization free energy of solvation -37.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds