Wall clock time and date at job start Sat Apr 11 2020 06:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65600 * 120.00245 * 2 1 4 4 O 1.42098 * 106.39962 * 311.46194 * 3 2 1 5 5 O 1.42100 * 106.40111 * 178.54466 * 3 2 1 6 6 C 1.76199 * 107.21677 * 65.00229 * 3 2 1 7 7 C 1.38253 * 120.00077 * 269.95135 * 6 3 2 8 8 C 1.38204 * 119.99863 * 179.97438 * 7 6 3 9 9 C 1.38261 * 120.00515 * 0.07163 * 8 7 6 10 10 C 1.38208 * 119.99533 * 359.95684 * 9 8 7 11 11 C 1.50701 * 119.99804 * 180.02562 * 10 9 8 12 12 N 1.46504 * 109.46856 * 270.01572 * 11 10 9 13 13 C 1.34781 * 119.99854 * 179.97438 * 12 11 10 14 14 O 1.21590 * 119.99689 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99955 * 180.02562 * 13 12 11 16 16 C 1.46499 * 120.00043 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47207 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46994 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99898 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99866 * 179.97438 * 18 17 16 21 21 N 1.31522 * 120.00023 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00166 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46882 * 89.99812 * 22 20 18 24 24 H 1.48495 * 109.47093 * 210.00290 * 22 20 18 25 25 H 1.48504 * 109.46991 * 329.99962 * 22 20 18 26 26 C 1.38220 * 119.99875 * 90.00339 * 6 3 2 27 27 H 1.08999 * 109.46431 * 299.99770 * 1 2 3 28 28 H 1.08994 * 109.47148 * 59.99555 * 1 2 3 29 29 H 1.09003 * 109.47564 * 180.02562 * 1 2 3 30 30 H 0.97009 * 119.99640 * 180.02562 * 2 1 3 31 31 H 1.08005 * 119.99943 * 0.04961 * 7 6 3 32 32 H 1.08004 * 120.00227 * 180.02562 * 8 7 6 33 33 H 1.07992 * 120.00025 * 179.97438 * 9 8 7 34 34 H 1.08990 * 109.47415 * 30.02092 * 11 10 9 35 35 H 1.09006 * 109.46768 * 150.01991 * 11 10 9 36 36 H 0.97001 * 120.00118 * 0.02562 * 12 11 10 37 37 H 0.97001 * 120.00017 * 0.02562 * 15 13 12 38 38 H 1.09000 * 109.47040 * 299.99968 * 16 15 13 39 39 H 1.08997 * 109.47093 * 59.99675 * 16 15 13 40 40 H 1.08997 * 109.46833 * 299.99394 * 17 16 15 41 41 H 1.08997 * 109.47211 * 59.99929 * 17 16 15 42 42 H 0.97003 * 119.99639 * 179.97438 * 21 20 18 43 43 H 1.08000 * 119.99660 * 0.26988 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2329 -1.0216 5 8 3.6738 1.1002 0.0346 6 6 1.9379 2.2414 1.5254 7 6 0.8594 3.1015 1.6176 8 6 0.5806 3.7343 2.8142 9 6 1.3810 3.5084 3.9187 10 6 2.4594 2.6490 3.8264 11 6 3.3315 2.4023 5.0304 12 7 4.4237 3.3786 5.0505 13 6 5.3346 3.3503 6.0435 14 8 5.2501 2.5142 6.9223 15 7 6.3390 4.2487 6.0624 16 6 7.3294 4.2177 7.1414 17 6 8.3529 5.3345 6.9266 18 6 9.3720 5.3021 8.0363 19 1 9.2970 4.5595 8.8168 20 6 10.4002 6.2205 8.0549 21 7 10.4918 7.1245 7.1040 22 14 11.6632 6.1809 9.4307 23 1 12.7914 5.2972 9.0416 24 1 12.1718 7.5544 9.6755 25 1 11.0302 5.6595 10.6688 26 6 2.7382 2.0156 2.6295 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.9500 -0.8402 -0.0004 31 1 0.2341 3.2780 0.7548 32 1 -0.2621 4.4059 2.8864 33 1 1.1633 4.0032 4.8536 34 1 2.7360 2.5044 5.9375 35 1 3.7454 1.3951 4.9789 36 1 4.4908 4.0458 4.3497 37 1 6.4061 4.9159 5.3615 38 1 6.8285 4.3625 8.0986 39 1 7.8383 3.2538 7.1399 40 1 8.8537 5.1891 5.9695 41 1 7.8443 6.2985 6.9279 42 1 11.2150 7.7708 7.1174 43 1 3.5837 1.3477 2.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273111134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:54 Heat of formation + Delta-G solvation = -115.842046 kcal Electronic energy + Delta-G solvation = -26144.133364 eV Core-core repulsion = 22121.808588 eV Total energy + Delta-G solvation = -4022.324776 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17788 -40.28470 -38.41078 -37.02525 -36.80794 -35.95682 -35.85782 -34.81621 -32.76968 -32.31517 -31.20846 -27.60279 -26.82522 -26.19397 -24.38761 -23.12104 -22.69799 -22.00132 -20.55412 -19.66780 -18.76080 -18.54221 -18.41504 -17.46664 -17.19831 -17.07336 -16.88527 -16.49385 -16.36512 -15.71058 -15.51674 -15.31120 -15.10940 -14.97226 -14.66314 -14.28518 -14.12393 -13.90243 -13.75802 -13.74096 -13.35028 -13.28025 -13.21014 -13.18853 -12.92710 -12.54056 -12.51920 -12.29980 -12.22791 -11.84096 -11.69706 -11.52419 -11.26913 -10.60492 -10.56920 -10.44702 -10.37875 -10.05722 -9.74975 -8.23600 -6.33910 -0.69149 -0.27309 0.10390 1.42215 1.42978 1.54282 1.74082 2.02497 2.14350 2.40226 2.46519 2.74445 3.11189 3.20125 3.42872 3.54275 3.77401 3.97867 4.13833 4.19013 4.23432 4.39765 4.46641 4.52841 4.61930 4.67900 4.72817 4.85057 4.87161 4.90092 4.97869 5.01845 5.20834 5.30515 5.34721 5.40391 5.51369 5.59744 5.74686 5.79032 6.00424 6.06693 6.17365 6.79409 7.08420 7.35343 7.56469 8.88281 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.020927 B = 0.001805 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.653324 B =15507.590594 C =15975.052404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.112 6.112 3 S 2.713 3.287 4 O -0.983 6.983 5 O -0.994 6.994 6 C -0.682 4.682 7 C -0.019 4.019 8 C -0.135 4.135 9 C -0.041 4.041 10 C -0.129 4.129 11 C 0.180 3.820 12 N -0.733 5.733 13 C 0.699 3.301 14 O -0.637 6.637 15 N -0.734 5.734 16 C 0.161 3.839 17 C 0.023 3.977 18 C -0.546 4.546 19 H 0.060 0.940 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.966 3.034 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.265 1.265 26 C -0.012 4.012 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.428 0.572 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.151 0.849 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.408 0.592 37 H 0.406 0.594 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.007 0.993 41 H 0.009 0.991 42 H 0.265 0.735 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.644 -12.104 -15.907 34.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.875 5.875 3 S 2.803 3.197 4 O -0.973 6.973 5 O -0.984 6.984 6 C -0.770 4.770 7 C -0.038 4.038 8 C -0.154 4.154 9 C -0.059 4.059 10 C -0.130 4.130 11 C 0.057 3.943 12 N -0.390 5.390 13 C 0.399 3.601 14 O -0.519 6.519 15 N -0.389 5.389 16 C 0.036 3.964 17 C -0.015 4.015 18 C -0.584 4.584 19 H 0.078 0.922 20 C -0.193 4.193 21 N -0.566 5.566 22 Si 0.791 3.209 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.190 1.190 26 C -0.032 4.032 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.265 0.735 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.169 0.831 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.242 0.758 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.074 0.926 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -28.210 -12.267 -15.830 34.596 hybrid contribution 1.007 0.475 0.683 1.306 sum -27.204 -11.791 -15.147 33.294 Atomic orbital electron populations 1.21794 0.76868 1.06204 1.02597 1.55048 1.17154 1.23551 1.91726 1.01111 0.72016 0.72981 0.73641 1.93554 1.79010 1.69632 1.55061 1.93574 1.33241 1.83952 1.87612 1.30766 1.08246 1.17225 1.20809 1.21319 0.92773 0.90488 0.99254 1.21668 1.01110 1.00647 0.91944 1.21749 0.91544 0.92550 1.00088 1.19890 0.98121 1.00536 0.94464 1.20042 0.86231 0.92217 0.95820 1.45052 1.28511 1.37513 1.27893 1.16121 0.80027 0.81563 0.82362 1.90866 1.78194 1.41804 1.41041 1.45246 1.28172 1.35110 1.30338 1.21080 0.88066 0.99025 0.88206 1.19136 0.92827 0.92927 0.96575 1.21468 1.10976 1.15713 1.10252 0.92193 1.25894 0.99979 0.94786 0.98673 1.70068 1.33301 1.18604 1.34670 0.85423 0.78747 0.77512 0.79226 1.19841 1.20521 1.18978 1.20929 0.95910 0.95493 0.90855 0.91033 0.91319 0.87442 0.73516 0.82375 0.81704 0.83110 0.90216 0.91232 0.75573 0.75846 0.93600 0.93829 0.97458 0.97251 0.92577 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.14 127.77 1.42 1.69 16 2 N -1.11 -9.28 6.19 -206.55 -1.28 -10.56 16 3 S 2.71 43.26 5.74 -56.49 -0.32 42.94 16 4 O -0.98 -20.40 17.01 -128.00 -2.18 -22.58 16 5 O -0.99 -23.39 17.28 -128.00 -2.21 -25.60 16 6 C -0.68 -9.89 5.95 22.27 0.13 -9.75 16 7 C -0.02 -0.21 9.52 22.27 0.21 0.00 16 8 C -0.14 -1.22 10.05 22.27 0.22 -0.99 16 9 C -0.04 -0.47 9.70 22.27 0.22 -0.25 16 10 C -0.13 -2.00 5.25 -19.87 -0.10 -2.10 16 11 C 0.18 3.65 5.80 85.63 0.50 4.15 16 12 N -0.73 -17.80 5.55 -482.29 -2.68 -20.48 16 13 C 0.70 24.20 8.57 179.05 1.53 25.73 16 14 O -0.64 -27.25 16.34 -4.00 -0.07 -27.32 16 15 N -0.73 -26.20 5.56 -478.54 -2.66 -28.86 16 16 C 0.16 7.06 5.61 86.38 0.48 7.55 16 17 C 0.02 1.17 5.09 29.85 0.15 1.32 16 18 C -0.55 -30.78 9.11 25.60 0.23 -30.55 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.01 0.30 5.46 84.65 0.46 0.76 16 21 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 22 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 C -0.01 -0.20 9.18 22.27 0.20 0.01 16 27 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.07 0.30 8.10 -2.39 -0.02 0.28 16 29 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.43 2.24 8.96 -96.73 -0.87 1.37 16 31 H 0.16 1.16 7.62 -2.91 -0.02 1.14 16 32 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 33 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 34 H 0.08 1.60 8.08 -2.39 -0.02 1.58 16 35 H 0.07 1.52 8.09 -2.38 -0.02 1.51 16 36 H 0.41 7.99 8.48 -92.71 -0.79 7.20 16 37 H 0.41 12.42 8.49 -92.71 -0.79 11.63 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.14 2.34 7.61 -2.91 -0.02 2.32 16 Total: -1.00 -81.69 384.68 -4.79 -86.48 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -1.38 Total: 16.92 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 5.67 Total: -2.43 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -6.33 Total: -114.42 kcal Atomic # 8 Polarization: -71.04 SS G_CDS: -4.45 Total: -75.50 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: 43.26 SS G_CDS: -0.32 Total: 42.94 kcal Total: -81.69 -4.79 -86.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273111134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.364 kcal (2) G-P(sol) polarization free energy of solvation -81.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds