Wall clock time and date at job start Sat Apr 11 2020 06:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46506 * 119.99487 * 2 1 4 4 S 1.65592 * 120.00134 * 180.02562 * 2 1 3 5 5 O 1.42100 * 106.40183 * 203.53888 * 4 2 1 6 6 O 1.42101 * 106.40364 * 336.46129 * 4 2 1 7 7 C 1.76205 * 107.21892 * 89.99912 * 4 2 1 8 8 C 1.38299 * 119.96671 * 269.72696 * 7 4 2 9 9 C 1.38263 * 120.13841 * 179.72495 * 8 7 4 10 10 C 1.38134 * 120.07100 * 0.54695 * 9 8 7 11 11 C 1.38846 * 119.92880 * 359.72870 * 10 9 8 12 12 N 1.39938 * 120.07131 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00227 * 213.24469 * 12 11 10 14 14 O 1.21581 * 119.99885 * 5.31824 * 13 12 11 15 15 N 1.34779 * 119.99960 * 185.31182 * 13 12 11 16 16 C 1.46503 * 119.99434 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.46755 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47314 * 179.97438 * 17 16 15 19 19 H 1.08009 * 119.99932 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00383 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99746 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00212 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47094 * 89.99920 * 22 20 18 24 24 H 1.48506 * 109.46941 * 209.99819 * 22 20 18 25 25 H 1.48500 * 109.47097 * 329.99939 * 22 20 18 26 26 C 1.38094 * 119.96267 * 89.99915 * 7 4 2 27 27 H 1.09000 * 109.47102 * 89.99943 * 1 2 3 28 28 H 1.08998 * 109.47501 * 330.00179 * 1 2 3 29 29 H 1.08997 * 109.46787 * 209.99599 * 1 2 3 30 30 H 1.09003 * 109.46612 * 90.00328 * 3 2 1 31 31 H 1.09000 * 109.46706 * 209.99832 * 3 2 1 32 32 H 1.09000 * 109.47330 * 329.99933 * 3 2 1 33 33 H 1.08001 * 119.92933 * 0.02562 * 8 7 4 34 34 H 1.08005 * 119.96369 * 180.27627 * 9 8 7 35 35 H 1.07994 * 120.03868 * 179.75195 * 10 9 8 36 36 H 0.97008 * 120.00000 * 33.24316 * 12 11 10 37 37 H 0.96996 * 120.00292 * 0.02562 * 15 13 12 38 38 H 1.09004 * 109.47390 * 299.99863 * 16 15 13 39 39 H 1.08995 * 109.47528 * 60.00713 * 16 15 13 40 40 H 1.08996 * 109.46891 * 300.00224 * 17 16 15 41 41 H 1.09003 * 109.47356 * 59.99680 * 17 16 15 42 42 H 0.97002 * 119.99937 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.03632 * 359.97438 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4340 -0.0006 5 8 3.5760 -1.1569 0.5439 6 8 1.4114 -2.4067 0.5433 7 6 2.5539 -1.8850 -1.6839 8 6 1.6213 -2.6656 -2.3424 9 6 1.8196 -3.0168 -3.6649 10 6 2.9560 -2.5982 -4.3293 11 6 3.8969 -1.8192 -3.6693 12 7 5.0489 -1.3930 -4.3397 13 6 6.2086 -1.2564 -3.6667 14 8 6.2786 -1.5949 -2.5011 15 7 7.2909 -0.7446 -4.2859 16 6 8.5513 -0.5957 -3.5541 17 6 9.6109 0.0045 -4.4804 18 6 10.9072 0.1584 -3.7276 19 1 10.9693 -0.1423 -2.6921 20 6 12.0143 0.6820 -4.3609 21 7 11.9389 1.0476 -5.6219 22 14 13.6214 0.8720 -3.4279 23 1 14.4295 -0.3649 -3.5768 24 1 14.3781 2.0265 -3.9755 25 1 13.3342 1.1056 -1.9898 26 6 3.6920 -1.4633 -2.3425 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 2.3791 1.5834 1.0277 31 1 3.1499 1.1385 -0.5138 32 1 1.6084 2.0285 -0.5138 33 1 0.7339 -2.9975 -1.8239 34 1 1.0872 -3.6228 -4.1777 35 1 3.1122 -2.8762 -5.3611 36 1 5.0129 -1.1959 -5.2889 37 1 7.2351 -0.4743 -5.2158 38 1 8.3998 0.0645 -2.7001 39 1 8.8856 -1.5721 -3.2038 40 1 9.7624 -0.6553 -5.3347 41 1 9.2764 0.9811 -4.8306 42 1 12.7179 1.4156 -6.0677 43 1 4.4219 -0.8571 -1.8266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273116659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:57 Heat of formation + Delta-G solvation = -69.378640 kcal Electronic energy + Delta-G solvation = -27078.837554 eV Core-core repulsion = 23058.527583 eV Total energy + Delta-G solvation = -4020.309971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64261 -38.79135 -37.43589 -36.45119 -35.97001 -35.27970 -34.63219 -32.91432 -31.49955 -30.37642 -28.93863 -28.42605 -24.99923 -24.92978 -23.65137 -22.99887 -21.11871 -20.73067 -19.42456 -18.57848 -18.12465 -17.63751 -16.61900 -16.37127 -16.34597 -16.10254 -15.66438 -15.04039 -14.82542 -14.56817 -14.53648 -14.35888 -14.04355 -13.76118 -13.49933 -13.30992 -12.99807 -12.92247 -12.63262 -12.56307 -12.31807 -12.26012 -12.01750 -11.90210 -11.78837 -11.24535 -11.14010 -11.05259 -10.69284 -10.65770 -10.36063 -10.08804 -9.63845 -9.56304 -9.40721 -9.31055 -8.71293 -8.45540 -8.22261 -6.12620 -4.15384 0.13601 0.59980 1.07290 2.62087 2.72065 3.11960 3.28525 3.34735 3.39617 3.46446 3.61663 4.07166 4.31942 4.45730 4.46400 4.57648 4.73190 4.83806 4.96296 5.01585 5.19903 5.21636 5.24897 5.26646 5.39862 5.46903 5.50949 5.59369 5.78456 5.95544 5.97454 6.14167 6.18466 6.21679 6.31170 6.68304 6.75356 6.80081 6.96256 7.49213 7.56409 7.85992 8.08917 8.25853 8.69043 8.90712 9.49821 10.99025 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.002333 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.862595 B =11996.570740 C =12977.958689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -1.006 6.006 3 C 0.091 3.909 4 S 2.692 3.308 5 O -0.942 6.942 6 O -0.957 6.957 7 C -0.657 4.657 8 C -0.048 4.048 9 C -0.118 4.118 10 C -0.100 4.100 11 C 0.161 3.839 12 N -0.693 5.693 13 C 0.692 3.308 14 O -0.572 6.572 15 N -0.729 5.729 16 C 0.137 3.863 17 C 0.013 3.987 18 C -0.521 4.521 19 H 0.061 0.939 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.024 4.024 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.133 0.867 36 H 0.408 0.592 37 H 0.396 0.604 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.022 0.978 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.981 -2.125 2.557 28.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.846 5.846 3 C -0.054 4.054 4 S 2.782 3.218 5 O -0.932 6.932 6 O -0.947 6.947 7 C -0.744 4.744 8 C -0.069 4.069 9 C -0.138 4.138 10 C -0.121 4.121 11 C 0.064 3.936 12 N -0.342 5.342 13 C 0.392 3.608 14 O -0.449 6.449 15 N -0.382 5.382 16 C 0.015 3.985 17 C -0.024 4.024 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.196 1.196 26 C -0.045 4.045 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.151 0.849 36 H 0.243 0.757 37 H 0.229 0.771 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -27.401 -2.726 4.219 27.857 hybrid contribution 0.918 0.411 -1.555 1.852 sum -26.483 -2.315 2.664 26.717 Atomic orbital electron populations 1.21627 0.78159 1.04337 1.02159 1.57361 1.15391 1.21786 1.90039 1.21551 0.96431 0.84757 1.02683 1.02111 0.73225 0.72427 0.74075 1.93646 1.39490 1.84004 1.76044 1.93555 1.66333 1.58397 1.76453 1.30876 1.03533 1.13587 1.26445 1.20809 0.97301 0.94270 0.94494 1.21028 0.97547 1.00619 0.94573 1.21200 0.94612 0.95459 1.00837 1.17548 0.87017 0.96265 0.92819 1.42772 1.07309 1.71223 1.12859 1.16133 0.80077 0.79259 0.85286 1.90977 1.83572 1.55255 1.15069 1.45593 1.11052 1.65830 1.15722 1.21724 0.80322 1.00802 0.95697 1.19331 0.92149 0.96199 0.94732 1.21039 0.94803 1.42197 0.97974 0.92125 1.24992 0.99180 0.95162 0.94945 1.69951 1.30342 1.42687 1.10397 0.86495 0.83110 0.77708 0.80158 1.20545 1.21171 1.19642 1.21012 0.94064 0.95850 0.93615 0.92607 0.90436 0.89800 0.91917 0.90678 0.90757 0.84400 0.84723 0.84875 0.75654 0.77086 0.92285 0.92387 0.95946 0.95896 0.92831 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 10.66 59.85 0.64 1.13 16 2 N -1.01 -8.89 3.58 -129.19 -0.46 -9.36 16 3 C 0.09 0.70 10.29 59.85 0.62 1.32 16 4 S 2.69 33.22 5.65 -107.50 -0.61 32.61 16 5 O -0.94 -15.27 16.35 -57.17 -0.93 -16.21 16 6 O -0.96 -12.95 15.87 -57.17 -0.91 -13.85 16 7 C -0.66 -8.01 5.97 -39.61 -0.24 -8.24 16 8 C -0.05 -0.48 9.52 -39.55 -0.38 -0.86 16 9 C -0.12 -1.01 10.04 -39.61 -0.40 -1.41 16 10 C -0.10 -0.94 9.96 -39.39 -0.39 -1.33 16 11 C 0.16 2.01 6.28 -83.69 -0.53 1.48 16 12 N -0.69 -8.52 5.35 -14.23 -0.08 -8.59 16 13 C 0.69 11.66 8.30 -86.91 -0.72 10.94 16 14 O -0.57 -12.03 14.03 5.29 0.07 -11.96 16 15 N -0.73 -12.17 5.56 -65.22 -0.36 -12.53 16 16 C 0.14 2.85 5.61 -4.04 -0.02 2.83 16 17 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 18 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 22 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.02 -0.33 8.13 -39.39 -0.32 -0.65 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 29 H 0.08 0.52 7.02 -51.93 -0.36 0.16 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.65 7.79 -51.93 -0.40 0.24 16 32 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.14 1.08 7.61 -52.49 -0.40 0.68 16 34 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.41 3.44 8.83 -40.82 -0.36 3.08 16 37 H 0.40 5.46 8.49 -40.82 -0.35 5.12 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.16 2.53 5.97 -52.49 -0.31 2.22 16 LS Contribution 377.84 15.07 5.69 5.69 Total: -1.00 -36.98 377.84 -10.11 -47.09 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.95 Total: 3.62 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.29 Total: -7.68 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.17 Total: -55.57 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.77 Total: -42.02 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 33.22 SS G_CDS: -0.61 Total: 32.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.98 -10.11 -47.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273116659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.288 kcal (2) G-P(sol) polarization free energy of solvation -36.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds