Wall clock time and date at job start Sat Apr 11 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46506 * 119.99487 * 2 1 4 4 S 1.65592 * 120.00134 * 180.02562 * 2 1 3 5 5 O 1.42100 * 106.40183 * 203.53888 * 4 2 1 6 6 O 1.42101 * 106.40364 * 336.46129 * 4 2 1 7 7 C 1.76205 * 107.21892 * 89.99912 * 4 2 1 8 8 C 1.38299 * 119.96671 * 269.72696 * 7 4 2 9 9 C 1.38263 * 120.13841 * 179.72495 * 8 7 4 10 10 C 1.38134 * 120.07100 * 0.54695 * 9 8 7 11 11 C 1.38846 * 119.92880 * 359.72870 * 10 9 8 12 12 N 1.39938 * 120.07131 * 180.02562 * 11 10 9 13 13 C 1.34778 * 120.00227 * 213.24469 * 12 11 10 14 14 O 1.21581 * 119.99885 * 5.31824 * 13 12 11 15 15 N 1.34779 * 119.99960 * 185.31182 * 13 12 11 16 16 C 1.46503 * 119.99434 * 179.97438 * 15 13 12 17 17 C 1.53007 * 109.46755 * 180.02562 * 16 15 13 18 18 C 1.50696 * 109.47314 * 179.97438 * 17 16 15 19 19 H 1.08009 * 119.99932 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00383 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99746 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00212 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47094 * 89.99920 * 22 20 18 24 24 H 1.48506 * 109.46941 * 209.99819 * 22 20 18 25 25 H 1.48500 * 109.47097 * 329.99939 * 22 20 18 26 26 C 1.38094 * 119.96267 * 89.99915 * 7 4 2 27 27 H 1.09000 * 109.47102 * 89.99943 * 1 2 3 28 28 H 1.08998 * 109.47501 * 330.00179 * 1 2 3 29 29 H 1.08997 * 109.46787 * 209.99599 * 1 2 3 30 30 H 1.09003 * 109.46612 * 90.00328 * 3 2 1 31 31 H 1.09000 * 109.46706 * 209.99832 * 3 2 1 32 32 H 1.09000 * 109.47330 * 329.99933 * 3 2 1 33 33 H 1.08001 * 119.92933 * 0.02562 * 8 7 4 34 34 H 1.08005 * 119.96369 * 180.27627 * 9 8 7 35 35 H 1.07994 * 120.03868 * 179.75195 * 10 9 8 36 36 H 0.97008 * 120.00000 * 33.24316 * 12 11 10 37 37 H 0.96996 * 120.00292 * 0.02562 * 15 13 12 38 38 H 1.09004 * 109.47390 * 299.99863 * 16 15 13 39 39 H 1.08995 * 109.47528 * 60.00713 * 16 15 13 40 40 H 1.08996 * 109.46891 * 300.00224 * 17 16 15 41 41 H 1.09003 * 109.47356 * 59.99680 * 17 16 15 42 42 H 0.97002 * 119.99937 * 180.02562 * 21 20 18 43 43 H 1.07999 * 120.03632 * 359.97438 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4340 -0.0006 5 8 3.5760 -1.1569 0.5439 6 8 1.4114 -2.4067 0.5433 7 6 2.5539 -1.8850 -1.6839 8 6 1.6213 -2.6656 -2.3424 9 6 1.8196 -3.0168 -3.6649 10 6 2.9560 -2.5982 -4.3293 11 6 3.8969 -1.8192 -3.6693 12 7 5.0489 -1.3930 -4.3397 13 6 6.2086 -1.2564 -3.6667 14 8 6.2786 -1.5949 -2.5011 15 7 7.2909 -0.7446 -4.2859 16 6 8.5513 -0.5957 -3.5541 17 6 9.6109 0.0045 -4.4804 18 6 10.9072 0.1584 -3.7276 19 1 10.9693 -0.1423 -2.6921 20 6 12.0143 0.6820 -4.3609 21 7 11.9389 1.0476 -5.6219 22 14 13.6214 0.8720 -3.4279 23 1 14.4295 -0.3649 -3.5768 24 1 14.3781 2.0265 -3.9755 25 1 13.3342 1.1056 -1.9898 26 6 3.6920 -1.4633 -2.3425 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 2.3791 1.5834 1.0277 31 1 3.1499 1.1385 -0.5138 32 1 1.6084 2.0285 -0.5138 33 1 0.7339 -2.9975 -1.8239 34 1 1.0872 -3.6228 -4.1777 35 1 3.1122 -2.8762 -5.3611 36 1 5.0129 -1.1959 -5.2889 37 1 7.2351 -0.4743 -5.2158 38 1 8.3998 0.0645 -2.7001 39 1 8.8856 -1.5721 -3.2038 40 1 9.7624 -0.6553 -5.3347 41 1 9.2764 0.9811 -4.8306 42 1 12.7179 1.4156 -6.0677 43 1 4.4219 -0.8571 -1.8266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273116659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:56 Heat of formation + Delta-G solvation = -98.311489 kcal Electronic energy + Delta-G solvation = -27080.092176 eV Core-core repulsion = 23058.527583 eV Total energy + Delta-G solvation = -4021.564594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79722 -39.85163 -38.48896 -37.16976 -36.98326 -36.79790 -35.91270 -34.86273 -32.32997 -31.89928 -30.25357 -28.98916 -26.78779 -25.65642 -24.56276 -24.09840 -22.83945 -22.01327 -20.38679 -19.66373 -19.24073 -18.53528 -18.45963 -17.49385 -17.24185 -17.08641 -16.83345 -16.52048 -16.11064 -15.88462 -15.42742 -15.35658 -15.29374 -15.03223 -14.66978 -14.28730 -14.26378 -13.98731 -13.56603 -13.41478 -13.39483 -13.27754 -13.23760 -12.97259 -12.91219 -12.68071 -12.56066 -12.54254 -12.30123 -12.02522 -11.75256 -11.64929 -11.49106 -11.23647 -10.61588 -10.37645 -10.14917 -10.07201 -9.24890 -8.25408 -6.35189 -0.76198 -0.25872 0.19546 1.40899 1.41680 1.48331 1.54835 1.81784 1.98266 2.40194 2.48524 2.70067 3.08221 3.09797 3.26014 3.80931 3.82924 4.00182 4.07737 4.28451 4.39157 4.42120 4.47300 4.48317 4.53088 4.66374 4.76266 4.83957 4.90054 4.96229 4.96818 5.02655 5.10298 5.20863 5.21764 5.32659 5.46392 5.53300 5.57444 5.76143 5.84816 5.89445 6.15448 6.77501 6.92556 7.34044 7.38959 8.86412 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016794 B = 0.002333 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.862595 B =11996.570740 C =12977.958689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.001 6.001 3 C 0.084 3.916 4 S 2.699 3.301 5 O -0.993 6.993 6 O -0.974 6.974 7 C -0.664 4.664 8 C -0.047 4.047 9 C -0.108 4.108 10 C -0.084 4.084 11 C 0.134 3.866 12 N -0.672 5.672 13 C 0.693 3.307 14 O -0.618 6.618 15 N -0.722 5.722 16 C 0.158 3.842 17 C 0.025 3.975 18 C -0.547 4.547 19 H 0.057 0.943 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.268 1.268 26 C -0.054 4.054 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.428 0.572 37 H 0.411 0.589 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.011 0.989 41 H 0.012 0.988 42 H 0.266 0.734 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.281 -2.639 1.092 30.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.842 5.842 3 C -0.061 4.061 4 S 2.791 3.209 5 O -0.983 6.983 6 O -0.964 6.964 7 C -0.753 4.753 8 C -0.067 4.067 9 C -0.127 4.127 10 C -0.105 4.105 11 C 0.038 3.962 12 N -0.322 5.322 13 C 0.394 3.606 14 O -0.498 6.498 15 N -0.376 5.376 16 C 0.034 3.966 17 C -0.012 4.012 18 C -0.586 4.586 19 H 0.075 0.925 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.788 3.212 23 H -0.198 1.198 24 H -0.204 1.204 25 H -0.192 1.192 26 C -0.076 4.076 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.179 0.821 34 H 0.197 0.803 35 H 0.188 0.812 36 H 0.268 0.732 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -29.759 -3.238 2.717 30.058 hybrid contribution 1.460 0.559 -1.136 1.932 sum -28.300 -2.679 1.581 28.470 Atomic orbital electron populations 1.21934 0.76005 1.05333 1.03879 1.57127 1.16575 1.20658 1.89879 1.21716 0.96329 0.84895 1.03170 1.01521 0.72226 0.72915 0.74203 1.93579 1.42294 1.84904 1.77563 1.93517 1.66238 1.59525 1.77140 1.30713 1.03841 1.14763 1.25995 1.21249 0.97217 0.92860 0.95416 1.21570 0.97698 0.99574 0.93824 1.21625 0.93351 0.93229 1.02257 1.17807 0.87700 0.98028 0.92666 1.42403 1.05849 1.70383 1.13547 1.16205 0.80941 0.78744 0.84743 1.90960 1.84483 1.57043 1.17271 1.45193 1.09975 1.66210 1.16232 1.21165 0.81309 0.99391 0.94771 1.19121 0.92178 0.95427 0.94501 1.21453 0.96448 1.42424 0.98241 0.92466 1.25825 1.02615 0.94720 0.95828 1.70043 1.31480 1.43257 1.11687 0.85474 0.78885 0.77978 0.78897 1.19796 1.20391 1.19240 1.20818 0.94575 0.97342 0.94833 0.90540 0.88133 0.90160 0.91632 0.92456 0.87609 0.82127 0.80325 0.81201 0.73244 0.75225 0.93615 0.93644 0.97029 0.97002 0.92504 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 10.66 127.77 1.36 2.09 16 2 N -1.00 -17.43 3.58 -562.66 -2.02 -19.45 16 3 C 0.08 1.31 10.29 127.77 1.31 2.62 16 4 S 2.70 69.32 5.65 -56.49 -0.32 69.00 16 5 O -0.99 -35.14 16.35 -128.00 -2.09 -37.23 16 6 O -0.97 -26.55 15.87 -128.00 -2.03 -28.58 16 7 C -0.66 -16.16 5.97 22.25 0.13 -16.03 16 8 C -0.05 -0.82 9.52 22.29 0.21 -0.61 16 9 C -0.11 -1.37 10.04 22.25 0.22 -1.15 16 10 C -0.08 -1.27 9.96 22.39 0.22 -1.05 16 11 C 0.13 3.22 6.28 38.15 0.24 3.46 16 12 N -0.67 -15.97 5.35 -317.18 -1.70 -17.67 16 13 C 0.69 23.85 8.30 179.05 1.49 25.34 16 14 O -0.62 -27.35 14.03 -3.97 -0.06 -27.41 16 15 N -0.72 -24.48 5.56 -478.52 -2.66 -27.14 16 16 C 0.16 6.81 5.61 86.38 0.48 7.30 16 17 C 0.03 1.26 5.09 29.85 0.15 1.41 16 18 C -0.55 -30.56 9.11 25.60 0.23 -30.33 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.13 16 20 C 0.01 0.51 5.46 84.65 0.46 0.97 16 21 N -0.93 -53.71 13.29 21.44 0.28 -53.43 16 22 Si 0.96 43.74 29.54 68.60 2.03 45.77 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C -0.05 -1.57 8.13 22.39 0.18 -1.38 16 27 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.10 0.58 8.07 -2.39 -0.02 0.56 16 29 H 0.08 0.89 7.02 -2.39 -0.02 0.87 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.10 7.79 -2.39 -0.02 1.08 16 32 H 0.11 0.95 8.07 -2.39 -0.02 0.93 16 33 H 0.16 2.00 7.61 -2.91 -0.02 1.98 16 34 H 0.18 0.78 8.06 -2.91 -0.02 0.75 16 35 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 36 H 0.43 6.36 8.83 -92.70 -0.82 5.54 16 37 H 0.41 11.23 8.49 -92.71 -0.79 10.44 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.12 4.31 5.97 -2.91 -0.02 4.30 16 Total: -1.00 -83.85 377.84 -2.41 -86.26 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -0.56 Total: 17.23 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 6.71 Total: -7.37 kcal Atomic # 7 Polarization: -111.59 SS G_CDS: -6.09 Total: -117.68 kcal Atomic # 8 Polarization: -89.04 SS G_CDS: -4.18 Total: -93.22 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 69.32 SS G_CDS: -0.32 Total: 69.00 kcal Total: -83.85 -2.41 -86.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273116659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.049 kcal (2) G-P(sol) polarization free energy of solvation -83.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds