Wall clock time and date at job start Sat Apr 11 2020 06:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00515 * 2 1 4 4 C 1.46902 * 111.00198 * 123.95524 * 2 1 3 5 5 C 1.53002 * 109.46918 * 66.04369 * 4 2 1 6 6 N 1.46498 * 109.47314 * 180.02562 * 5 4 2 7 7 S 1.65596 * 120.00423 * 165.00055 * 6 5 4 8 8 O 1.42103 * 106.40191 * 311.46261 * 7 6 5 9 9 O 1.42095 * 106.40399 * 178.54185 * 7 6 5 10 10 C 1.76199 * 107.21836 * 65.00135 * 7 6 5 11 11 C 1.38362 * 119.95621 * 270.25642 * 10 7 6 12 12 C 1.38309 * 120.16352 * 180.29938 * 11 10 7 13 13 C 1.38083 * 120.08139 * 359.44253 * 12 11 10 14 14 C 1.39008 * 119.91959 * 0.27876 * 13 12 11 15 15 N 1.39535 * 120.08373 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99879 * 33.38960 * 15 14 13 17 17 O 1.21742 * 120.00080 * 5.27877 * 16 15 14 18 18 C 1.46175 * 119.99906 * 185.27838 * 16 15 14 19 19 H 1.07998 * 119.99632 * 0.02562 * 18 16 15 20 20 C 1.40124 * 119.99671 * 180.02562 * 18 16 15 21 21 N 1.30633 * 120.00207 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99631 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47348 * 89.99615 * 22 20 18 24 24 H 1.48493 * 109.47231 * 209.99942 * 22 20 18 25 25 H 1.48502 * 109.47202 * 329.99843 * 22 20 18 26 26 C 1.38033 * 119.95992 * 89.99875 * 10 7 6 27 27 H 1.08999 * 109.47103 * 296.04626 * 1 2 3 28 28 H 1.09002 * 109.46546 * 56.04485 * 1 2 3 29 29 H 1.09001 * 109.47303 * 176.04072 * 1 2 3 30 30 H 1.08989 * 109.47507 * 183.95339 * 3 2 1 31 31 H 1.09004 * 109.46907 * 303.95700 * 3 2 1 32 32 H 1.08999 * 109.46775 * 63.95235 * 3 2 1 33 33 H 1.09000 * 109.46699 * 306.05182 * 4 2 1 34 34 H 1.08996 * 109.47430 * 186.04360 * 4 2 1 35 35 H 1.09003 * 109.47317 * 60.00358 * 5 4 2 36 36 H 1.08996 * 109.47064 * 300.00216 * 5 4 2 37 37 H 0.97008 * 119.99959 * 345.00421 * 6 5 4 38 38 H 1.07997 * 119.91823 * 0.04402 * 11 10 7 39 39 H 1.08001 * 119.95298 * 179.72412 * 12 11 10 40 40 H 1.08003 * 120.03582 * 180.25486 * 13 12 11 41 41 H 0.97001 * 120.00038 * 213.39565 * 15 14 13 42 42 H 0.96999 * 119.99523 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.04142 * 0.02562 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 7 2.1559 -3.0065 2.1050 7 16 1.6107 -4.5437 2.3912 8 8 0.1920 -4.4828 2.3379 9 8 2.3262 -5.0190 3.5232 10 6 2.1175 -5.5391 1.0285 11 6 1.2949 -5.6679 -0.0766 12 6 1.6857 -6.4531 -1.1461 13 6 2.9041 -7.1023 -1.1193 14 6 3.7357 -6.9706 -0.0133 15 7 4.9674 -7.6256 0.0176 16 6 5.6656 -7.8020 -1.1217 17 8 5.2695 -7.3071 -2.1611 18 6 6.8983 -8.5874 -1.1093 19 1 7.2493 -9.0267 -0.1873 20 6 7.6244 -8.7704 -2.2937 21 7 7.1994 -8.2394 -3.4090 22 14 9.2001 -9.7735 -2.2777 23 1 8.8820 -11.1992 -2.5452 24 1 10.1204 -9.2664 -3.3268 25 1 9.8504 -9.6526 -0.9481 26 6 3.3369 -6.1850 1.0624 27 1 -0.3633 0.4512 0.9233 28 1 -0.3632 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0710 30 1 3.0828 1.3432 -0.0708 31 1 1.5899 1.9164 -0.8524 32 1 1.7045 1.8723 0.9233 33 1 1.5610 -0.3873 2.0627 34 1 3.0797 -0.6612 1.1756 35 1 2.0658 -2.6214 0.0450 36 1 0.5472 -2.3475 0.9322 37 1 2.8226 -2.6118 2.6888 38 1 0.3435 -5.1574 -0.1024 39 1 1.0389 -6.5548 -2.0050 40 1 3.2103 -7.7119 -1.9566 41 1 5.3212 -7.9540 0.8589 42 1 7.7019 -8.3663 -4.2289 43 1 3.9800 -6.0810 1.9237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274719977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:10 Heat of formation + Delta-G solvation = -76.847255 kcal Electronic energy + Delta-G solvation = -27170.558029 eV Core-core repulsion = 23149.924194 eV Total energy + Delta-G solvation = -4020.633835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.36234 -38.20851 -37.18277 -37.06039 -35.81188 -35.06471 -33.61853 -32.56118 -30.83324 -29.20876 -29.09146 -27.90001 -26.34684 -24.20555 -23.10344 -22.27464 -21.50302 -20.39565 -19.30502 -17.79789 -17.64550 -17.30034 -16.58131 -15.98279 -15.76773 -15.61482 -15.37032 -15.16604 -15.06838 -14.56704 -14.25176 -14.09631 -14.01358 -13.50088 -12.97485 -12.72116 -12.67292 -12.52178 -12.39140 -12.22207 -12.08084 -12.01824 -11.99297 -11.88969 -11.69596 -11.50760 -11.33947 -11.22045 -11.16388 -10.75813 -10.57423 -10.41151 -9.70332 -9.55045 -9.01559 -8.90541 -8.73175 -7.89515 -7.31216 -6.44168 -4.91701 0.45259 1.23637 1.74475 2.95499 3.02224 3.09672 3.12931 3.68052 3.68785 3.91690 4.01287 4.34113 4.40418 4.49673 4.59219 4.75062 4.87879 5.01524 5.13269 5.16737 5.20669 5.25566 5.31756 5.36019 5.52297 5.55812 5.65226 5.66114 5.67760 5.77910 5.82350 5.99954 6.13557 6.31732 6.60770 6.63963 6.77632 6.80687 6.82739 7.09970 7.20934 7.60358 7.89563 8.05010 8.76065 9.08209 10.26273 10.46293 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.002705 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.146128 B =10347.389346 C =11276.420160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.049 3.951 5 C 0.117 3.883 6 N -1.119 6.119 7 S 2.702 3.298 8 O -0.963 6.963 9 O -0.963 6.963 10 C -0.654 4.654 11 C -0.068 4.068 12 C -0.119 4.119 13 C -0.072 4.072 14 C 0.177 3.823 15 N -0.700 5.700 16 C 0.541 3.459 17 O -0.561 6.561 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.086 3.914 21 N -0.758 5.758 22 Si 0.914 3.086 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.079 4.079 27 H 0.027 0.973 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.417 0.583 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.396 0.604 42 H 0.273 0.727 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 13.746 8.034 19.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.081 4.081 5 C -0.009 4.009 6 N -0.879 5.879 7 S 2.794 3.206 8 O -0.953 6.953 9 O -0.953 6.953 10 C -0.744 4.744 11 C -0.089 4.089 12 C -0.139 4.139 13 C -0.094 4.094 14 C 0.076 3.924 15 N -0.343 5.343 16 C 0.349 3.651 17 O -0.443 6.443 18 C -0.572 4.572 19 H 0.092 0.908 20 C -0.136 4.136 21 N -0.385 5.385 22 Si 0.738 3.262 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.102 4.102 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.251 0.749 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.039 13.501 7.206 18.870 hybrid contribution 1.425 -0.201 0.629 1.571 sum -9.614 13.300 7.835 18.186 Atomic orbital electron populations 1.22530 0.87027 1.02968 1.00690 1.61866 1.08332 1.14112 1.42631 1.22390 1.01020 0.88303 1.00578 1.22272 1.01088 0.92765 0.91969 1.21279 0.99489 0.91478 0.88682 1.55478 1.58514 1.32981 1.40898 1.01490 0.73540 0.72095 0.73487 1.93557 1.28640 1.86149 1.86954 1.93578 1.74175 1.79413 1.48145 1.30271 1.05351 1.19732 1.19017 1.20628 0.98014 0.98258 0.91982 1.21120 0.96541 0.97930 0.98315 1.21720 0.91383 0.97739 0.98529 1.18010 0.87078 0.92843 0.94427 1.44226 1.17840 1.59294 1.12966 1.18420 0.84543 0.81223 0.80938 1.90637 1.70894 1.52289 1.30503 1.20862 1.07057 1.33223 0.96063 0.90841 1.25756 0.98512 0.94537 0.94754 1.69975 1.35784 1.33371 0.99418 0.86253 0.80940 0.80016 0.78953 1.19514 1.20244 1.18712 1.20564 0.94994 0.95318 0.99310 0.95412 0.91107 0.90635 0.91098 0.91091 0.95613 0.93893 0.89807 0.90207 0.90151 0.74935 0.85229 0.85523 0.83632 0.77006 0.91622 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.32 60.06 0.56 0.68 16 2 N -0.54 -4.73 5.02 -251.26 -1.26 -5.99 16 3 C 0.03 0.18 9.57 60.07 0.57 0.75 16 4 C 0.05 0.40 5.10 -3.82 -0.02 0.38 16 5 C 0.12 1.13 6.15 -4.04 -0.02 1.11 16 6 N -1.12 -11.27 6.00 -10.61 -0.06 -11.34 16 7 S 2.70 36.04 5.74 -107.50 -0.62 35.42 16 8 O -0.96 -14.53 16.75 -57.17 -0.96 -15.49 16 9 O -0.96 -15.10 17.28 -57.17 -0.99 -16.09 16 10 C -0.65 -10.09 5.94 -39.61 -0.24 -10.32 16 11 C -0.07 -1.02 9.52 -39.51 -0.38 -1.40 16 12 C -0.12 -1.96 10.04 -39.61 -0.40 -2.36 16 13 C -0.07 -1.46 8.65 -39.35 -0.34 -1.80 16 14 C 0.18 3.57 6.28 -83.77 -0.53 3.05 16 15 N -0.70 -15.22 5.32 -11.19 -0.06 -15.28 16 16 C 0.54 14.47 7.47 -13.08 -0.10 14.37 16 17 O -0.56 -16.78 12.70 5.15 0.07 -16.72 16 18 C -0.54 -14.19 9.54 -35.69 -0.34 -14.53 16 19 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 20 C 0.09 2.25 5.50 -17.35 -0.10 2.16 16 21 N -0.76 -21.35 11.82 55.55 0.66 -20.69 16 22 Si 0.91 19.02 29.56 -169.99 -5.02 14.00 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 26 C -0.08 -1.36 9.44 -39.36 -0.37 -1.73 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 29 H 0.07 0.57 6.47 -51.93 -0.34 0.23 16 30 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 31 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 34 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.76 6.16 -51.93 -0.32 0.44 16 37 H 0.42 3.30 8.65 -34.47 -0.30 3.00 16 38 H 0.13 1.62 7.62 -52.49 -0.40 1.22 16 39 H 0.13 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.15 3.30 6.42 -52.48 -0.34 2.97 16 41 H 0.40 7.39 8.79 -40.82 -0.36 7.03 16 42 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 43 H 0.13 2.08 7.61 -52.49 -0.40 1.68 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -35.34 374.92 -10.08 -45.42 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -5.79 Total: 10.75 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -1.69 Total: -9.64 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.73 Total: -53.30 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -1.88 Total: -48.30 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Atomic # 16 Polarization: 36.04 SS G_CDS: -0.62 Total: 35.42 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.34 -10.08 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274719977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.426 kcal (2) G-P(sol) polarization free energy of solvation -35.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds