Wall clock time and date at job start Sat Apr 11 2020 06:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00515 * 2 1 4 4 C 1.46902 * 111.00198 * 123.95524 * 2 1 3 5 5 C 1.53002 * 109.46918 * 66.04369 * 4 2 1 6 6 N 1.46498 * 109.47314 * 180.02562 * 5 4 2 7 7 S 1.65596 * 120.00423 * 165.00055 * 6 5 4 8 8 O 1.42103 * 106.40191 * 311.46261 * 7 6 5 9 9 O 1.42095 * 106.40399 * 178.54185 * 7 6 5 10 10 C 1.76199 * 107.21836 * 65.00135 * 7 6 5 11 11 C 1.38362 * 119.95621 * 270.25642 * 10 7 6 12 12 C 1.38309 * 120.16352 * 180.29938 * 11 10 7 13 13 C 1.38083 * 120.08139 * 359.44253 * 12 11 10 14 14 C 1.39008 * 119.91959 * 0.27876 * 13 12 11 15 15 N 1.39535 * 120.08373 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99879 * 33.38960 * 15 14 13 17 17 O 1.21742 * 120.00080 * 5.27877 * 16 15 14 18 18 C 1.46175 * 119.99906 * 185.27838 * 16 15 14 19 19 H 1.07998 * 119.99632 * 0.02562 * 18 16 15 20 20 C 1.40124 * 119.99671 * 180.02562 * 18 16 15 21 21 N 1.30633 * 120.00207 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99631 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47348 * 89.99615 * 22 20 18 24 24 H 1.48493 * 109.47231 * 209.99942 * 22 20 18 25 25 H 1.48502 * 109.47202 * 329.99843 * 22 20 18 26 26 C 1.38033 * 119.95992 * 89.99875 * 10 7 6 27 27 H 1.08999 * 109.47103 * 296.04626 * 1 2 3 28 28 H 1.09002 * 109.46546 * 56.04485 * 1 2 3 29 29 H 1.09001 * 109.47303 * 176.04072 * 1 2 3 30 30 H 1.08989 * 109.47507 * 183.95339 * 3 2 1 31 31 H 1.09004 * 109.46907 * 303.95700 * 3 2 1 32 32 H 1.08999 * 109.46775 * 63.95235 * 3 2 1 33 33 H 1.09000 * 109.46699 * 306.05182 * 4 2 1 34 34 H 1.08996 * 109.47430 * 186.04360 * 4 2 1 35 35 H 1.09003 * 109.47317 * 60.00358 * 5 4 2 36 36 H 1.08996 * 109.47064 * 300.00216 * 5 4 2 37 37 H 0.97008 * 119.99959 * 345.00421 * 6 5 4 38 38 H 1.07997 * 119.91823 * 0.04402 * 11 10 7 39 39 H 1.08001 * 119.95298 * 179.72412 * 12 11 10 40 40 H 1.08003 * 120.03582 * 180.25486 * 13 12 11 41 41 H 0.97001 * 120.00038 * 213.39565 * 15 14 13 42 42 H 0.96999 * 119.99523 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.04142 * 0.02562 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9703 6 7 2.1559 -3.0065 2.1050 7 16 1.6107 -4.5437 2.3912 8 8 0.1920 -4.4828 2.3379 9 8 2.3262 -5.0190 3.5232 10 6 2.1175 -5.5391 1.0285 11 6 1.2949 -5.6679 -0.0766 12 6 1.6857 -6.4531 -1.1461 13 6 2.9041 -7.1023 -1.1193 14 6 3.7357 -6.9706 -0.0133 15 7 4.9674 -7.6256 0.0176 16 6 5.6656 -7.8020 -1.1217 17 8 5.2695 -7.3071 -2.1611 18 6 6.8983 -8.5874 -1.1093 19 1 7.2493 -9.0267 -0.1873 20 6 7.6244 -8.7704 -2.2937 21 7 7.1994 -8.2394 -3.4090 22 14 9.2001 -9.7735 -2.2777 23 1 8.8820 -11.1992 -2.5452 24 1 10.1204 -9.2664 -3.3268 25 1 9.8504 -9.6526 -0.9481 26 6 3.3369 -6.1850 1.0624 27 1 -0.3633 0.4512 0.9233 28 1 -0.3632 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0710 30 1 3.0828 1.3432 -0.0708 31 1 1.5899 1.9164 -0.8524 32 1 1.7045 1.8723 0.9233 33 1 1.5610 -0.3873 2.0627 34 1 3.0797 -0.6612 1.1756 35 1 2.0658 -2.6214 0.0450 36 1 0.5472 -2.3475 0.9322 37 1 2.8226 -2.6118 2.6888 38 1 0.3435 -5.1574 -0.1024 39 1 1.0389 -6.5548 -2.0050 40 1 3.2103 -7.7119 -1.9566 41 1 5.3212 -7.9540 0.8589 42 1 7.7019 -8.3663 -4.2289 43 1 3.9800 -6.0810 1.9237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274719977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:09 Heat of formation + Delta-G solvation = -106.177067 kcal Electronic energy + Delta-G solvation = -27171.829865 eV Core-core repulsion = 23149.924194 eV Total energy + Delta-G solvation = -4021.905671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94223 -38.90704 -38.80790 -38.31714 -36.99407 -35.86883 -35.40422 -34.56367 -32.21689 -30.80727 -29.80611 -28.44626 -28.27385 -24.89662 -24.54378 -23.77202 -22.19506 -22.03953 -20.43844 -19.54848 -19.01932 -18.46967 -17.68892 -17.42875 -17.12095 -16.74278 -16.46984 -16.40739 -16.03167 -15.85888 -15.64437 -15.02117 -14.91241 -14.81537 -14.66406 -14.48452 -13.84856 -13.49127 -13.35107 -13.30815 -13.24332 -13.20342 -13.15957 -13.00171 -12.82370 -12.76534 -12.61288 -12.56496 -12.37570 -12.09509 -12.05782 -11.87496 -11.25140 -10.94165 -10.53179 -10.32038 -9.91306 -9.31958 -8.95645 -8.40614 -6.98444 -0.66554 -0.13065 0.33481 1.39181 1.39442 1.55647 1.93030 2.18296 2.28418 2.53322 2.78201 2.81997 3.07615 3.37661 3.52517 3.82083 3.86399 4.06948 4.10700 4.19657 4.30270 4.40447 4.45834 4.49951 4.54345 4.56442 4.69724 4.76473 4.79232 4.96581 4.97991 5.05301 5.05914 5.11088 5.22616 5.31664 5.37446 5.65416 5.76340 5.98456 6.07354 6.09980 6.10666 6.25461 6.74719 7.25108 8.28548 8.52506 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013367 B = 0.002705 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.146128 B =10347.389346 C =11276.420160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.563 5.563 3 C 0.025 3.975 4 C 0.051 3.949 5 C 0.112 3.888 6 N -1.105 6.105 7 S 2.733 3.267 8 O -0.973 6.973 9 O -0.982 6.982 10 C -0.656 4.656 11 C -0.056 4.056 12 C -0.116 4.116 13 C -0.099 4.099 14 C 0.143 3.857 15 N -0.695 5.695 16 C 0.530 3.470 17 O -0.605 6.605 18 C -0.564 4.564 19 H 0.092 0.908 20 C 0.031 3.969 21 N -0.810 5.810 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.249 1.249 26 C -0.075 4.075 27 H 0.033 0.967 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.429 0.571 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.108 0.892 41 H 0.409 0.591 42 H 0.279 0.721 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.791 14.797 9.594 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.288 5.288 3 C -0.123 4.123 4 C -0.079 4.079 5 C -0.014 4.014 6 N -0.868 5.868 7 S 2.821 3.179 8 O -0.963 6.963 9 O -0.973 6.973 10 C -0.743 4.743 11 C -0.076 4.076 12 C -0.135 4.135 13 C -0.121 4.121 14 C 0.044 3.956 15 N -0.339 5.339 16 C 0.337 3.663 17 O -0.490 6.490 18 C -0.600 4.600 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.439 5.439 22 Si 0.819 3.181 23 H -0.186 1.186 24 H -0.197 1.197 25 H -0.172 1.172 26 C -0.097 4.097 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.266 0.734 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.126 0.874 41 H 0.244 0.756 42 H 0.089 0.911 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.422 14.548 8.808 20.486 hybrid contribution 1.359 -0.389 0.200 1.427 sum -10.063 14.159 9.007 19.567 Atomic orbital electron populations 1.22570 0.86490 1.03050 1.01313 1.61868 1.09038 1.15023 1.42902 1.22415 1.01015 0.87641 1.01225 1.22241 1.01480 0.91732 0.92437 1.21400 0.99805 0.92315 0.87889 1.55165 1.58816 1.31515 1.41297 1.00667 0.72886 0.72140 0.72193 1.93545 1.29401 1.86519 1.86827 1.93552 1.74574 1.80305 1.48833 1.30770 1.04363 1.19228 1.19916 1.21062 0.98907 0.96800 0.90867 1.21394 0.95325 0.96988 0.99805 1.21580 0.93478 0.99189 0.97842 1.18243 0.86766 0.94650 0.95904 1.43771 1.18391 1.59604 1.12177 1.18718 0.85089 0.80980 0.81485 1.90593 1.72057 1.53961 1.32431 1.21400 1.07494 1.33717 0.97347 0.88944 1.26979 1.02420 0.95322 0.93866 1.70127 1.37924 1.35328 1.00493 0.84969 0.75525 0.77985 0.79586 1.18608 1.19657 1.17187 1.20701 0.95901 0.94465 0.98645 0.94856 0.90453 0.90840 0.91129 0.90545 0.94867 0.92875 0.89393 0.91056 0.89541 0.73413 0.81810 0.82837 0.87366 0.75566 0.91139 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.32 127.69 1.19 1.37 16 2 N -0.56 -8.68 5.02 -948.85 -4.76 -13.44 16 3 C 0.02 0.30 9.57 127.69 1.22 1.52 16 4 C 0.05 0.73 5.10 86.30 0.44 1.17 16 5 C 0.11 1.90 6.15 86.38 0.53 2.43 16 6 N -1.10 -19.43 6.00 -187.49 -1.12 -20.55 16 7 S 2.73 66.20 5.74 -56.49 -0.32 65.87 16 8 O -0.97 -26.47 16.75 -128.00 -2.14 -28.62 16 9 O -0.98 -28.68 17.28 -128.00 -2.21 -30.89 16 10 C -0.66 -19.10 5.94 22.25 0.13 -18.97 16 11 C -0.06 -1.57 9.52 22.32 0.21 -1.36 16 12 C -0.12 -3.75 10.04 22.25 0.22 -3.53 16 13 C -0.10 -4.18 8.65 22.42 0.19 -3.99 16 14 C 0.14 5.94 6.28 38.29 0.24 6.18 16 15 N -0.69 -31.39 5.32 -307.53 -1.64 -33.03 16 16 C 0.53 29.64 7.47 86.30 0.65 30.28 16 17 O -0.60 -38.33 12.70 -4.48 -0.06 -38.39 16 18 C -0.56 -30.59 9.54 24.79 0.24 -30.35 16 19 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 20 C 0.03 1.65 5.50 85.33 0.47 2.12 16 21 N -0.81 -47.35 11.82 21.85 0.26 -47.09 16 22 Si 1.00 39.11 29.56 68.60 2.03 41.14 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 25 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 26 C -0.07 -2.54 9.44 22.42 0.21 -2.33 16 27 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.08 0.87 8.12 -2.39 -0.02 0.86 16 29 H 0.07 0.96 6.47 -2.39 -0.02 0.94 16 30 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.08 0.82 8.12 -2.39 -0.02 0.81 16 32 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.05 0.66 8.12 -2.39 -0.02 0.64 16 34 H 0.09 1.18 8.06 -2.39 -0.02 1.16 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.39 6.16 -2.39 -0.01 1.37 16 37 H 0.43 5.65 8.65 -96.74 -0.84 4.81 16 38 H 0.16 3.49 7.62 -2.91 -0.02 3.47 16 39 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.11 5.34 6.42 -2.91 -0.02 5.32 16 41 H 0.41 15.65 8.79 -92.71 -0.82 14.84 16 42 H 0.28 14.71 8.29 -92.71 -0.77 13.94 16 43 H 0.15 4.49 7.61 -2.91 -0.02 4.47 16 Total: -1.00 -78.91 374.92 -4.62 -83.53 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: -0.60 Total: 36.92 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 5.95 Total: -15.45 kcal Atomic # 7 Polarization: -106.85 SS G_CDS: -7.26 Total: -114.11 kcal Atomic # 8 Polarization: -93.48 SS G_CDS: -4.41 Total: -97.90 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 16 Polarization: 66.20 SS G_CDS: -0.32 Total: 65.87 kcal Total: -78.91 -4.62 -83.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274719977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.646 kcal (2) G-P(sol) polarization free energy of solvation -78.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds