Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99907 * 2 1 4 4 S 1.65599 * 119.99981 * 180.02562 * 2 1 3 5 5 O 1.42101 * 106.40275 * 336.45997 * 4 2 1 6 6 O 1.42098 * 106.40133 * 203.53559 * 4 2 1 7 7 N 1.65607 * 107.21871 * 89.99726 * 4 2 1 8 8 C 1.36937 * 119.99782 * 264.72813 * 7 4 2 9 9 H 1.07999 * 120.00415 * 40.36639 * 8 7 4 10 10 C 1.38818 * 119.99377 * 220.36593 * 8 7 4 11 11 N 1.31615 * 120.00385 * 16.07949 * 10 8 7 12 12 Si 1.86798 * 119.99410 * 196.07346 * 10 8 7 13 13 H 1.48502 * 109.47096 * 90.00675 * 12 10 8 14 14 H 1.48508 * 109.47015 * 209.99818 * 12 10 8 15 15 H 1.48493 * 109.47586 * 330.00161 * 12 10 8 16 16 C 1.46504 * 119.99903 * 84.72551 * 7 4 2 17 17 C 1.50703 * 109.47012 * 265.00013 * 16 7 4 18 18 O 1.21282 * 119.99710 * 0.02562 * 17 16 7 19 19 N 1.34771 * 119.99757 * 180.02562 * 17 16 7 20 20 C 1.46503 * 120.00306 * 5.45403 * 19 17 16 21 21 C 1.39931 * 120.00079 * 185.45865 * 19 17 16 22 22 C 1.38869 * 120.06660 * 293.19717 * 21 19 17 23 23 C 1.38116 * 119.92598 * 179.97438 * 22 21 19 24 24 C 1.38285 * 120.06813 * 359.97438 * 23 22 21 25 25 C 1.38279 * 120.14197 * 0.27257 * 24 23 22 26 26 C 1.38109 * 120.07041 * 359.49653 * 25 24 23 27 27 H 1.09004 * 109.46986 * 269.99543 * 1 2 3 28 28 H 1.08995 * 109.47252 * 29.99649 * 1 2 3 29 29 H 1.09002 * 109.47007 * 149.99853 * 1 2 3 30 30 H 1.08996 * 109.47001 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47121 * 300.00148 * 3 2 1 32 32 H 1.08999 * 109.46733 * 60.00307 * 3 2 1 33 33 H 0.97000 * 119.99986 * 180.02562 * 11 10 8 34 34 H 1.08999 * 109.46894 * 145.00263 * 16 7 4 35 35 H 1.09000 * 109.46823 * 25.00013 * 16 7 4 36 36 H 1.08993 * 109.47184 * 270.00573 * 20 19 17 37 37 H 1.09004 * 109.46560 * 30.00120 * 20 19 17 38 38 H 1.09000 * 109.47014 * 150.00001 * 20 19 17 39 39 H 1.08000 * 120.03936 * 0.02562 * 22 21 19 40 40 H 1.07998 * 119.96181 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.92153 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.96038 * 179.72330 * 25 24 23 43 43 H 1.07999 * 120.03168 * 180.25176 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4113 -2.4068 0.5434 6 8 3.5759 -1.1570 0.5438 7 7 2.5380 -1.8580 -1.5827 8 6 1.6687 -2.7139 -2.2047 9 1 0.6066 -2.6267 -2.0292 10 6 2.1526 -3.6935 -3.0609 11 7 3.4290 -4.0142 -3.0396 12 14 0.9923 -4.5567 -4.2432 13 1 0.9462 -3.8094 -5.5257 14 1 1.4770 -5.9381 -4.4925 15 1 -0.3687 -4.6089 -3.6515 16 6 3.6849 -1.3173 -2.3167 17 6 3.2574 -0.0939 -3.0859 18 8 2.1081 0.2889 -3.0263 19 7 4.1523 0.5748 -3.8398 20 6 5.5085 0.0467 -4.0079 21 6 3.7862 1.7734 -4.4621 22 6 2.8398 1.7689 -5.4784 23 6 2.4801 2.9538 -6.0902 24 6 3.0610 4.1437 -5.6914 25 6 4.0074 4.1507 -4.6833 26 6 4.3679 2.9699 -4.0642 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2691 1.0696 -0.0005 31 1 1.9342 1.8403 -0.8899 32 1 1.9342 1.8402 0.8900 33 1 3.7671 -4.6985 -3.6382 34 1 4.0599 -2.0699 -3.0103 35 1 4.4722 -1.0473 -1.6128 36 1 6.1516 0.4399 -3.2206 37 1 5.4847 -1.0414 -3.9481 38 1 5.8981 0.3488 -4.9800 39 1 2.3848 0.8401 -5.7894 40 1 1.7439 2.9510 -6.8803 41 1 2.7783 5.0687 -6.1718 42 1 4.4625 5.0812 -4.3772 43 1 5.1041 2.9767 -3.2741 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283585811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = -50.454857 kcal Electronic energy + Delta-G solvation = -29651.654084 eV Core-core repulsion = 25632.164709 eV Total energy + Delta-G solvation = -4019.489374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.09307 -38.19688 -36.20902 -35.44305 -35.38043 -34.85349 -34.68421 -31.42618 -30.85969 -30.19189 -27.58465 -27.15172 -26.29897 -24.23281 -23.83713 -22.52952 -22.12795 -19.34571 -18.55939 -17.51239 -17.16347 -16.67269 -16.51615 -16.18527 -15.71052 -15.47904 -15.23764 -14.62297 -14.27061 -14.04562 -13.97977 -13.78029 -13.33863 -13.15911 -13.03001 -12.76093 -12.49138 -12.32767 -12.19453 -12.01881 -11.78421 -11.70863 -11.51448 -11.36623 -11.17356 -11.09805 -11.02230 -10.85742 -10.81156 -10.73221 -10.52475 -10.20146 -9.41564 -9.11669 -8.99765 -8.86634 -8.41642 -8.15986 -7.74327 -6.29118 -4.05396 1.36172 1.46704 1.67385 3.19063 3.26926 3.28166 3.28743 3.33299 3.83205 3.97410 4.26829 4.61494 4.96735 4.98465 5.00345 5.15054 5.27388 5.37982 5.41291 5.48015 5.51481 5.60159 5.68573 5.73466 5.83218 5.87415 5.90413 6.04764 6.07077 6.10824 6.19470 6.27376 6.39507 6.47849 6.55257 6.61839 6.72597 6.79327 7.10659 7.25594 7.32661 7.59562 7.75457 8.37504 8.82360 8.94907 9.35750 10.74853 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.005500 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.541514 B = 5089.512764 C = 6345.293779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -1.008 6.008 3 C 0.100 3.900 4 S 2.756 3.244 5 O -0.980 6.980 6 O -1.014 7.014 7 N -0.832 5.832 8 C -0.278 4.278 9 H 0.088 0.912 10 C 0.038 3.962 11 N -0.875 5.875 12 Si 0.917 3.083 13 H -0.280 1.280 14 H -0.284 1.284 15 H -0.268 1.268 16 C 0.100 3.900 17 C 0.494 3.506 18 O -0.506 6.506 19 N -0.592 5.592 20 C 0.080 3.920 21 C 0.155 3.845 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.130 4.130 25 C -0.114 4.114 26 C -0.126 4.126 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.268 0.732 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 13.385 -4.861 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.847 5.847 3 C -0.046 4.046 4 S 2.770 3.230 5 O -0.964 6.964 6 O -0.998 6.998 7 N -0.663 5.663 8 C -0.412 4.412 9 H 0.105 0.895 10 C -0.167 4.167 11 N -0.515 5.515 12 Si 0.744 3.256 13 H -0.206 1.206 14 H -0.209 1.209 15 H -0.192 1.192 16 C -0.032 4.032 17 C 0.282 3.718 18 O -0.378 6.378 19 N -0.325 5.325 20 C -0.062 4.062 21 C 0.064 3.936 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.148 4.148 25 C -0.133 4.133 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.841 12.952 -3.972 13.842 hybrid contribution -0.538 -0.106 -1.167 1.290 sum 2.303 12.846 -5.140 14.026 Atomic orbital electron populations 1.21204 0.79254 1.02859 1.00342 1.57751 1.14860 1.21998 1.90064 1.21298 0.96347 0.86126 1.00877 1.03210 0.72855 0.72326 0.74562 1.93485 1.67082 1.58015 1.77819 1.93448 1.41513 1.85801 1.79023 1.52642 1.34220 1.54084 1.25315 1.18987 0.89003 1.07951 1.25257 0.89479 1.25380 0.96397 0.95308 0.99651 1.69810 1.13581 1.30541 1.37595 0.86072 0.80768 0.78288 0.80430 1.20616 1.20933 1.19239 1.21350 0.90418 0.93084 0.98311 1.22592 0.85340 0.84960 0.78880 1.90640 1.17891 1.66808 1.62502 1.45812 1.13873 1.22025 1.50818 1.21867 0.81982 1.00839 1.01516 1.17688 0.96766 0.85997 0.93105 1.21341 0.97541 0.98802 0.94757 1.21024 0.99777 0.92235 1.00011 1.21098 0.97633 0.97876 0.98213 1.20953 0.98088 0.97458 0.96796 1.21236 1.01647 0.91593 1.00132 0.93851 0.92021 0.91033 0.90981 0.92564 0.93304 0.92226 0.83866 0.89375 0.92504 0.89554 0.91453 0.85905 0.86075 0.86304 0.86071 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.93 10.33 59.85 0.62 2.55 16 2 N -1.01 -20.13 3.64 -129.21 -0.47 -20.61 16 3 C 0.10 1.71 10.49 59.85 0.63 2.34 16 4 S 2.76 65.97 6.01 -107.50 -0.65 65.32 16 5 O -0.98 -26.05 16.35 -57.17 -0.93 -26.99 16 6 O -1.01 -24.93 15.37 -57.17 -0.88 -25.81 16 7 N -0.83 -20.54 2.38 -61.08 -0.15 -20.68 16 8 C -0.28 -7.36 8.70 -15.06 -0.13 -7.49 16 9 H 0.09 2.32 7.88 -52.49 -0.41 1.90 16 10 C 0.04 0.98 5.11 -17.43 -0.09 0.89 16 11 N -0.88 -22.66 11.28 55.49 0.63 -22.04 16 12 Si 0.92 20.50 29.58 -169.99 -5.03 15.47 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 16 C 0.10 2.19 4.47 -5.19 -0.02 2.16 16 17 C 0.49 9.98 7.59 -10.99 -0.08 9.90 16 18 O -0.51 -11.35 15.39 5.56 0.09 -11.26 16 19 N -0.59 -9.74 2.93 -120.82 -0.35 -10.09 16 20 C 0.08 1.03 10.10 59.85 0.60 1.64 16 21 C 0.16 2.39 4.84 -83.69 -0.40 1.99 16 22 C -0.10 -1.60 9.29 -39.39 -0.37 -1.96 16 23 C -0.11 -1.40 10.04 -39.61 -0.40 -1.80 16 24 C -0.13 -1.44 10.04 -39.55 -0.40 -1.83 16 25 C -0.11 -1.27 10.04 -39.61 -0.40 -1.67 16 26 C -0.13 -1.64 9.85 -39.40 -0.39 -2.03 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.07 1.35 7.79 -51.93 -0.40 0.95 16 30 H 0.07 1.26 6.91 -51.93 -0.36 0.90 16 31 H 0.06 0.96 7.83 -51.93 -0.41 0.55 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.27 6.52 8.31 -40.82 -0.34 6.19 16 34 H 0.14 3.28 4.57 -51.93 -0.24 3.05 16 35 H 0.09 1.82 6.99 -51.93 -0.36 1.46 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.17 6.48 -51.93 -0.34 0.83 16 38 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 39 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -32.73 372.73 -8.83 -41.56 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.88 Total: 4.81 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -0.83 Total: 4.69 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -0.34 Total: -73.41 kcal Atomic # 8 Polarization: -62.33 SS G_CDS: -1.73 Total: -64.06 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Atomic # 16 Polarization: 65.97 SS G_CDS: -0.65 Total: 65.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.73 -8.83 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283585811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.894 kcal (2) G-P(sol) polarization free energy of solvation -32.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds