Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00050 * 2 1 4 4 S 1.65599 * 119.99869 * 179.97438 * 2 1 3 5 5 O 1.42102 * 104.27732 * 333.92912 * 4 2 1 6 6 O 1.42098 * 104.27647 * 206.07542 * 4 2 1 7 7 C 1.81401 * 104.44760 * 90.00040 * 4 2 1 8 8 C 1.53002 * 109.46710 * 180.02562 * 7 4 2 9 9 N 1.46499 * 109.46861 * 180.02562 * 8 7 4 10 10 C 1.34781 * 119.99968 * 179.97438 * 9 8 7 11 11 O 1.21572 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.39236 * 119.99636 * 184.29090 * 12 10 9 14 14 C 1.39481 * 119.83681 * 324.69610 * 13 12 10 15 15 C 1.36376 * 120.17073 * 180.29622 * 14 13 12 16 16 C 1.40868 * 119.82553 * 359.49187 * 15 14 13 17 17 C 1.41155 * 120.15840 * 180.25124 * 16 15 14 18 18 H 1.08007 * 119.99826 * 215.00602 * 17 16 15 19 19 C 1.39895 * 120.00481 * 35.01331 * 17 16 15 20 20 N 1.30876 * 119.99949 * 355.53526 * 19 17 16 21 21 Si 1.86794 * 120.00004 * 175.54513 * 19 17 16 22 22 H 1.48500 * 109.47375 * 59.99379 * 21 19 17 23 23 H 1.48503 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47219 * 299.99325 * 21 19 17 25 25 C 1.40870 * 119.67277 * 0.50490 * 16 15 14 26 26 C 1.36365 * 119.82848 * 359.74277 * 25 16 15 27 27 H 1.08997 * 109.47533 * 240.00265 * 1 2 3 28 28 H 1.09008 * 109.46977 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47339 * 119.99981 * 1 2 3 30 30 H 1.08999 * 109.47217 * 269.99822 * 3 2 1 31 31 H 1.08999 * 109.47021 * 29.99929 * 3 2 1 32 32 H 1.08997 * 109.46889 * 149.99947 * 3 2 1 33 33 H 1.08996 * 109.47408 * 60.00025 * 7 4 2 34 34 H 1.09000 * 109.47213 * 299.99432 * 7 4 2 35 35 H 1.08995 * 109.47617 * 60.00207 * 8 7 4 36 36 H 1.09003 * 109.47473 * 299.99641 * 8 7 4 37 37 H 0.96998 * 119.99997 * 0.02562 * 9 8 7 38 38 H 0.96999 * 119.99776 * 4.28566 * 12 10 9 39 39 H 1.07999 * 119.91387 * 0.03109 * 14 13 12 40 40 H 1.08004 * 120.08495 * 179.69989 * 15 14 13 41 41 H 0.96992 * 120.00204 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.08147 * 179.71369 * 25 16 15 43 43 H 1.08001 * 119.91706 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3969 -2.3559 0.6063 6 8 3.5394 -1.1189 0.6058 7 6 2.5193 -1.8269 -1.7558 8 6 3.2808 -3.1472 -1.8891 9 7 3.4641 -3.4641 -3.3076 10 6 4.1134 -4.5888 -3.6684 11 8 4.5474 -5.3400 -2.8168 12 7 4.2825 -4.8800 -4.9735 13 6 4.8735 -6.0841 -5.3471 14 6 5.8962 -6.6261 -4.5688 15 6 6.4839 -7.8020 -4.9317 16 6 6.0483 -8.4748 -6.0901 17 6 6.6481 -9.6951 -6.4693 18 1 6.7759 -9.9318 -7.5153 19 6 7.0769 -10.5978 -5.4903 20 7 7.0023 -10.2744 -4.2243 21 14 7.7561 -12.2645 -5.9901 22 1 8.9512 -12.0742 -6.8509 23 1 8.1383 -13.0279 -4.7750 24 1 6.7194 -13.0164 -6.7419 25 6 5.0149 -7.9212 -6.8711 26 6 4.4402 -6.7420 -6.4982 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 2.3792 1.5834 -1.0276 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.0866 -1.0298 -2.2362 34 1 1.5451 -1.9198 -2.2358 35 1 2.7131 -3.9442 -1.4089 36 1 4.2550 -3.0549 -1.4090 37 1 3.1188 -2.8642 -3.9871 38 1 3.9924 -4.2509 -5.6524 39 1 6.2263 -6.1111 -3.6788 40 1 7.2790 -8.2180 -4.3306 41 1 7.2999 -10.9001 -3.5456 42 1 4.6789 -8.4291 -7.7630 43 1 3.6481 -6.3161 -7.0962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289602230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = -63.245516 kcal Electronic energy + Delta-G solvation = -26436.955279 eV Core-core repulsion = 22416.911260 eV Total energy + Delta-G solvation = -4020.044019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.96614 -37.55566 -37.54095 -36.72839 -36.25391 -35.50406 -34.33984 -32.92388 -31.05968 -29.44329 -28.69588 -28.60019 -25.41564 -24.97779 -23.54699 -21.52951 -21.06977 -20.15021 -19.29404 -18.20310 -18.03098 -17.24543 -16.84619 -16.70121 -16.66773 -15.82896 -15.26453 -15.08545 -14.88678 -14.65008 -14.28016 -14.15040 -13.86181 -13.56425 -13.21296 -13.04379 -12.76086 -12.70210 -12.62951 -12.45544 -12.21683 -12.07059 -12.06141 -12.00105 -11.68903 -11.42954 -11.40100 -11.11304 -10.92630 -10.46843 -10.00042 -9.86732 -9.64494 -9.55709 -9.14942 -8.98125 -8.74244 -7.48071 -6.83894 -6.54534 -4.28731 -0.26885 2.14650 2.69556 2.93352 3.08939 3.13368 3.14899 3.20257 3.42210 3.65974 3.67716 3.93675 4.02530 4.24197 4.30354 4.59577 4.77053 4.80467 4.86354 4.87924 5.05716 5.28208 5.28700 5.31218 5.36644 5.43201 5.69739 5.94369 6.15232 6.35080 6.43435 6.78249 6.84217 7.08386 7.18254 7.31110 7.39625 7.69003 7.84235 8.04556 8.13529 8.33212 8.45148 8.71913 8.94458 8.97976 9.09752 10.36561 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.001865 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.354558 B =15010.712302 C =15536.232090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.009 6.009 3 C 0.080 3.920 4 S 2.621 3.379 5 O -0.943 6.943 6 O -0.945 6.945 7 C -0.649 4.649 8 C 0.153 3.847 9 N -0.748 5.748 10 C 0.693 3.307 11 O -0.569 6.569 12 N -0.666 5.666 13 C 0.021 3.979 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.099 3.901 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.808 5.808 21 Si 0.916 3.084 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.267 1.267 25 C -0.204 4.204 26 C -0.115 4.115 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.395 0.605 38 H 0.391 0.609 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.123 23.541 4.679 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.848 5.848 3 C -0.065 4.065 4 S 2.711 3.289 5 O -0.934 6.934 6 O -0.935 6.935 7 C -0.777 4.777 8 C 0.027 3.973 9 N -0.407 5.407 10 C 0.393 3.607 11 O -0.445 6.445 12 N -0.312 5.312 13 C -0.071 4.071 14 C -0.114 4.114 15 C -0.163 4.163 16 C 0.096 3.904 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.147 4.147 20 N -0.435 5.435 21 Si 0.741 3.259 22 H -0.191 1.191 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.224 4.224 26 C -0.136 4.136 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.228 0.772 38 H 0.224 0.776 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.418 22.289 6.494 25.872 hybrid contribution -0.405 0.119 -1.629 1.683 sum -11.823 22.408 4.865 25.799 Atomic orbital electron populations 1.21574 0.77986 1.03720 1.02364 1.57385 1.15402 1.21848 1.90156 1.21684 0.97793 0.84934 1.02077 1.04865 0.74026 0.73118 0.76872 1.93624 1.64525 1.62349 1.72852 1.93614 1.44104 1.82817 1.72973 1.30992 1.10545 1.07269 1.28889 1.20652 1.00162 0.92414 0.84082 1.44966 1.63320 1.25481 1.06901 1.16027 0.79610 0.81330 0.83735 1.90961 1.54093 1.49719 1.49722 1.42068 1.63784 1.20626 1.04700 1.17084 1.00782 0.89160 1.00100 1.20682 0.94796 0.97369 0.98540 1.21309 1.01791 0.93406 0.99796 1.17724 0.89569 0.91711 0.91372 1.19426 1.34924 1.01151 0.93998 0.90731 1.25890 0.93593 1.00595 0.94603 1.69780 1.36800 1.36108 1.00777 0.86258 0.79778 0.81222 0.78673 1.19113 1.20455 1.19186 1.20664 1.00711 0.97792 1.03201 1.20038 1.00045 0.96268 0.97228 0.91157 0.90111 0.92213 0.92671 0.90487 0.89552 0.84326 0.84353 0.90052 0.90079 0.77160 0.77603 0.87299 0.85198 0.91022 0.88557 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.26 59.85 0.61 0.99 16 2 N -1.01 -5.88 3.52 -129.20 -0.45 -6.34 16 3 C 0.08 0.33 10.61 59.85 0.64 0.97 16 4 S 2.62 22.69 5.43 -107.50 -0.58 22.11 16 5 O -0.94 -11.39 17.10 -57.54 -0.98 -12.38 16 6 O -0.94 -11.19 16.57 -57.54 -0.95 -12.15 16 7 C -0.65 -4.16 6.29 37.16 0.23 -3.93 16 8 C 0.15 1.73 5.68 -4.04 -0.02 1.71 16 9 N -0.75 -9.16 5.56 -65.23 -0.36 -9.53 16 10 C 0.69 12.52 8.40 -86.91 -0.73 11.79 16 11 O -0.57 -13.16 13.76 5.30 0.07 -13.09 16 12 N -0.67 -11.66 5.31 -14.10 -0.07 -11.74 16 13 C 0.02 0.48 6.31 -83.57 -0.53 -0.05 16 14 C -0.09 -2.38 8.61 -39.79 -0.34 -2.72 16 15 C -0.14 -3.90 8.61 -39.26 -0.34 -4.24 16 16 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 17 C -0.46 -12.54 9.02 -37.86 -0.34 -12.88 16 18 H 0.07 1.91 7.85 -52.48 -0.41 1.50 16 19 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 20 N -0.81 -21.97 10.61 55.54 0.59 -21.38 16 21 Si 0.92 19.43 29.56 -169.99 -5.03 14.41 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.20 -4.96 9.74 -39.26 -0.38 -5.34 16 26 C -0.12 -2.53 9.90 -39.79 -0.39 -2.92 16 27 H 0.07 0.37 7.90 -51.93 -0.41 -0.04 16 28 H 0.08 0.17 7.80 -51.92 -0.40 -0.23 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 0.20 7.92 -51.93 -0.41 -0.21 16 32 H 0.09 0.46 6.91 -51.93 -0.36 0.10 16 33 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.14 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.39 3.24 8.49 -40.82 -0.35 2.89 16 38 H 0.39 5.10 8.83 -40.82 -0.36 4.74 16 39 H 0.11 2.81 6.22 -52.49 -0.33 2.48 16 40 H 0.13 3.71 6.15 -52.48 -0.32 3.39 16 41 H 0.28 6.99 8.30 -40.82 -0.34 6.66 16 42 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -37.61 374.46 -10.28 -47.90 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.87 Total: 9.37 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.28 Total: -12.84 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.30 Total: -48.98 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -1.86 Total: -37.61 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Atomic # 16 Polarization: 22.69 SS G_CDS: -0.58 Total: 22.11 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.61 -10.28 -47.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289602230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.349 kcal (2) G-P(sol) polarization free energy of solvation -37.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds