Wall clock time and date at job start Sat Apr 11 2020 06:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46501 * 120.00050 * 2 1 4 4 S 1.65599 * 119.99869 * 179.97438 * 2 1 3 5 5 O 1.42102 * 104.27732 * 333.92912 * 4 2 1 6 6 O 1.42098 * 104.27647 * 206.07542 * 4 2 1 7 7 C 1.81401 * 104.44760 * 90.00040 * 4 2 1 8 8 C 1.53002 * 109.46710 * 180.02562 * 7 4 2 9 9 N 1.46499 * 109.46861 * 180.02562 * 8 7 4 10 10 C 1.34781 * 119.99968 * 179.97438 * 9 8 7 11 11 O 1.21572 * 120.00134 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99877 * 180.02562 * 10 9 8 13 13 C 1.39236 * 119.99636 * 184.29090 * 12 10 9 14 14 C 1.39481 * 119.83681 * 324.69610 * 13 12 10 15 15 C 1.36376 * 120.17073 * 180.29622 * 14 13 12 16 16 C 1.40868 * 119.82553 * 359.49187 * 15 14 13 17 17 C 1.41155 * 120.15840 * 180.25124 * 16 15 14 18 18 H 1.08007 * 119.99826 * 215.00602 * 17 16 15 19 19 C 1.39895 * 120.00481 * 35.01331 * 17 16 15 20 20 N 1.30876 * 119.99949 * 355.53526 * 19 17 16 21 21 Si 1.86794 * 120.00004 * 175.54513 * 19 17 16 22 22 H 1.48500 * 109.47375 * 59.99379 * 21 19 17 23 23 H 1.48503 * 109.47298 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47219 * 299.99325 * 21 19 17 25 25 C 1.40870 * 119.67277 * 0.50490 * 16 15 14 26 26 C 1.36365 * 119.82848 * 359.74277 * 25 16 15 27 27 H 1.08997 * 109.47533 * 240.00265 * 1 2 3 28 28 H 1.09008 * 109.46977 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47339 * 119.99981 * 1 2 3 30 30 H 1.08999 * 109.47217 * 269.99822 * 3 2 1 31 31 H 1.08999 * 109.47021 * 29.99929 * 3 2 1 32 32 H 1.08997 * 109.46889 * 149.99947 * 3 2 1 33 33 H 1.08996 * 109.47408 * 60.00025 * 7 4 2 34 34 H 1.09000 * 109.47213 * 299.99432 * 7 4 2 35 35 H 1.08995 * 109.47617 * 60.00207 * 8 7 4 36 36 H 1.09003 * 109.47473 * 299.99641 * 8 7 4 37 37 H 0.96998 * 119.99997 * 0.02562 * 9 8 7 38 38 H 0.96999 * 119.99776 * 4.28566 * 12 10 9 39 39 H 1.07999 * 119.91387 * 0.03109 * 14 13 12 40 40 H 1.08004 * 120.08495 * 179.69989 * 15 14 13 41 41 H 0.96992 * 120.00204 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.08147 * 179.71369 * 25 16 15 43 43 H 1.08001 * 119.91706 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3969 -2.3559 0.6063 6 8 3.5394 -1.1189 0.6058 7 6 2.5193 -1.8269 -1.7558 8 6 3.2808 -3.1472 -1.8891 9 7 3.4641 -3.4641 -3.3076 10 6 4.1134 -4.5888 -3.6684 11 8 4.5474 -5.3400 -2.8168 12 7 4.2825 -4.8800 -4.9735 13 6 4.8735 -6.0841 -5.3471 14 6 5.8962 -6.6261 -4.5688 15 6 6.4839 -7.8020 -4.9317 16 6 6.0483 -8.4748 -6.0901 17 6 6.6481 -9.6951 -6.4693 18 1 6.7759 -9.9318 -7.5153 19 6 7.0769 -10.5978 -5.4903 20 7 7.0023 -10.2744 -4.2243 21 14 7.7561 -12.2645 -5.9901 22 1 8.9512 -12.0742 -6.8509 23 1 8.1383 -13.0279 -4.7750 24 1 6.7194 -13.0164 -6.7419 25 6 5.0149 -7.9212 -6.8711 26 6 4.4402 -6.7420 -6.4982 27 1 -0.3634 -0.5138 0.8900 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 2.3792 1.5834 -1.0276 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.0866 -1.0298 -2.2362 34 1 1.5451 -1.9198 -2.2358 35 1 2.7131 -3.9442 -1.4089 36 1 4.2550 -3.0549 -1.4090 37 1 3.1188 -2.8642 -3.9871 38 1 3.9924 -4.2509 -5.6524 39 1 6.2263 -6.1111 -3.6788 40 1 7.2790 -8.2180 -4.3306 41 1 7.2999 -10.9001 -3.5456 42 1 4.6789 -8.4291 -7.7630 43 1 3.6481 -6.3161 -7.0962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289602230.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:25 Heat of formation + Delta-G solvation = -93.477079 kcal Electronic energy + Delta-G solvation = -26438.266218 eV Core-core repulsion = 22416.911260 eV Total energy + Delta-G solvation = -4021.354958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46424 -39.30053 -38.34960 -37.27421 -36.92686 -36.74096 -36.03976 -34.71798 -32.17991 -31.35973 -30.44769 -28.90380 -26.87308 -25.74404 -24.58120 -23.22320 -22.80175 -21.74996 -20.02534 -19.46582 -19.19446 -18.77074 -18.18139 -17.51774 -17.44549 -17.05057 -16.73714 -16.21741 -15.80928 -15.67402 -15.55908 -15.26484 -15.21231 -14.75881 -14.47759 -14.08054 -13.94579 -13.67574 -13.62625 -13.49292 -13.30218 -13.28428 -13.21793 -12.98011 -12.80034 -12.65644 -12.55056 -12.51875 -12.30734 -12.12699 -11.79065 -11.70863 -11.33770 -10.93355 -10.56678 -10.24619 -9.99396 -9.42593 -8.69953 -8.47231 -6.30343 -0.93333 0.87565 1.15920 1.39315 1.48735 1.52535 1.56304 1.72804 2.14363 2.25315 2.74407 2.84579 3.06563 3.25450 3.37867 3.71307 3.73277 3.86914 4.20923 4.42097 4.46061 4.50739 4.57441 4.58881 4.63858 4.80694 5.00319 5.01757 5.04436 5.05788 5.12917 5.17645 5.28065 5.35368 5.44242 5.57614 5.72004 5.80667 6.10406 6.16271 6.18551 6.39637 6.73783 6.98357 7.05530 7.12693 7.61307 8.45578 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.001865 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.354558 B =15010.712302 C =15536.232090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.003 6.003 3 C 0.071 3.929 4 S 2.624 3.376 5 O -0.987 6.987 6 O -0.986 6.986 7 C -0.624 4.624 8 C 0.139 3.861 9 N -0.718 5.718 10 C 0.688 3.312 11 O -0.625 6.625 12 N -0.653 5.653 13 C 0.038 3.962 14 C -0.111 4.111 15 C -0.168 4.168 16 C 0.063 3.937 17 C -0.496 4.496 18 H 0.081 0.919 19 C 0.020 3.980 20 N -0.849 5.849 21 Si 0.991 3.009 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.207 4.207 26 C -0.107 4.107 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.174 0.826 34 H 0.174 0.826 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.420 0.580 38 H 0.418 0.582 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.281 0.719 42 H 0.114 0.886 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 25.803 2.241 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.844 5.844 3 C -0.073 4.073 4 S 2.717 3.283 5 O -0.977 6.977 6 O -0.976 6.976 7 C -0.754 4.754 8 C 0.012 3.988 9 N -0.378 5.378 10 C 0.388 3.612 11 O -0.505 6.505 12 N -0.302 5.302 13 C -0.056 4.056 14 C -0.131 4.131 15 C -0.189 4.189 16 C 0.061 3.939 17 C -0.527 4.527 18 H 0.099 0.901 19 C -0.191 4.191 20 N -0.477 5.477 21 Si 0.812 3.188 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.227 4.227 26 C -0.127 4.127 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.192 0.808 34 H 0.191 0.809 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.259 0.741 38 H 0.256 0.744 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.132 0.868 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.680 24.658 4.045 28.487 hybrid contribution 0.165 -0.340 -0.849 0.929 sum -13.514 24.318 3.196 28.004 Atomic orbital electron populations 1.21811 0.76776 1.05491 1.02526 1.57111 1.16004 1.21150 1.90142 1.21907 0.97188 0.84343 1.03865 1.04392 0.72931 0.73223 0.77709 1.93569 1.65302 1.64114 1.74697 1.93562 1.45885 1.83439 1.74764 1.30781 1.12295 1.05369 1.26916 1.20778 1.00218 0.94685 0.83070 1.44630 1.61347 1.23745 1.08072 1.16279 0.79551 0.82182 0.83183 1.90945 1.56321 1.52022 1.51245 1.41778 1.63243 1.19679 1.05479 1.17113 0.99018 0.90256 0.99184 1.20691 0.96289 0.97225 0.98890 1.21165 1.02373 0.94695 1.00618 1.18074 0.91241 0.92501 0.92129 1.19732 1.36520 1.01899 0.94586 0.90130 1.26870 0.93444 1.04529 0.94274 1.69917 1.38206 1.37573 1.01995 0.85116 0.79284 0.75966 0.78427 1.18110 1.19991 1.18312 1.20950 0.99848 0.98685 1.03245 1.20414 1.00249 0.95126 0.96923 0.92884 0.87504 0.90371 0.90012 0.88739 0.91286 0.80771 0.80863 0.91570 0.91423 0.74133 0.74388 0.88660 0.87961 0.90846 0.86776 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.48 10.26 127.77 1.31 1.79 16 2 N -1.00 -9.55 3.52 -562.68 -1.98 -11.53 16 3 C 0.07 0.42 10.61 127.77 1.36 1.77 16 4 S 2.62 43.32 5.43 -56.49 -0.31 43.01 16 5 O -0.99 -24.16 17.10 -127.65 -2.18 -26.34 16 6 O -0.99 -23.79 16.57 -127.65 -2.12 -25.91 16 7 C -0.62 -5.93 6.29 71.98 0.45 -5.48 16 8 C 0.14 2.93 5.68 86.38 0.49 3.43 16 9 N -0.72 -15.53 5.56 -478.54 -2.66 -18.19 16 10 C 0.69 23.86 8.40 179.05 1.50 25.36 16 11 O -0.63 -29.48 13.76 -3.94 -0.05 -29.53 16 12 N -0.65 -21.14 5.31 -316.78 -1.68 -22.82 16 13 C 0.04 1.67 6.31 38.57 0.24 1.92 16 14 C -0.11 -5.80 8.61 22.13 0.19 -5.61 16 15 C -0.17 -9.68 8.61 22.48 0.19 -9.48 16 16 C 0.06 3.51 5.55 -21.28 -0.12 3.40 16 17 C -0.50 -27.56 9.02 23.39 0.21 -27.35 16 18 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 19 C 0.02 1.06 5.42 85.24 0.46 1.53 16 20 N -0.85 -48.50 10.61 21.82 0.23 -48.27 16 21 Si 0.99 40.55 29.56 68.60 2.03 42.58 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 23 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 25 C -0.21 -9.89 9.74 22.48 0.22 -9.67 16 26 C -0.11 -4.39 9.90 22.13 0.22 -4.17 16 27 H 0.05 0.51 7.90 -2.39 -0.02 0.49 16 28 H 0.11 0.09 7.80 -2.38 -0.02 0.08 16 29 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.09 0.23 7.92 -2.39 -0.02 0.21 16 32 H 0.07 0.67 6.91 -2.39 -0.02 0.65 16 33 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.42 4.83 8.49 -92.71 -0.79 4.05 16 38 H 0.42 9.00 8.83 -92.71 -0.82 8.18 16 39 H 0.10 5.19 6.22 -2.91 -0.02 5.17 16 40 H 0.10 6.33 6.15 -2.91 -0.02 6.31 16 41 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 42 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -88.96 374.46 -2.54 -91.50 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: -0.55 Total: 28.08 kcal Atomic # 6 Polarization: -29.32 SS G_CDS: 6.73 Total: -22.58 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -6.09 Total: -100.81 kcal Atomic # 8 Polarization: -77.43 SS G_CDS: -4.35 Total: -81.78 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 43.32 SS G_CDS: -0.31 Total: 43.01 kcal Total: -88.96 -2.54 -91.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289602230.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.978 kcal (2) G-P(sol) polarization free energy of solvation -88.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds