Wall clock time and date at job start Sat Apr 11 2020 06:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54383 * 2 1 4 4 O 1.42103 * 110.54349 * 223.24441 * 2 1 3 5 5 N 1.65605 * 104.44972 * 111.62219 * 2 1 3 6 6 C 1.46500 * 120.00073 * 64.99695 * 5 2 1 7 7 C 1.53000 * 109.47148 * 165.00237 * 6 5 2 8 8 C 1.52995 * 109.47157 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99968 * 179.97438 * 9 8 7 11 11 O 1.21581 * 120.00275 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99660 * 179.97438 * 10 9 8 13 13 C 1.39238 * 119.99647 * 184.29115 * 12 10 9 14 14 C 1.39490 * 119.83647 * 324.69823 * 13 12 10 15 15 C 1.36364 * 120.17166 * 180.30102 * 14 13 12 16 16 C 1.40873 * 119.82804 * 359.47909 * 15 14 13 17 17 C 1.41159 * 120.16700 * 180.25259 * 16 15 14 18 18 H 1.07994 * 120.00020 * 215.02006 * 17 16 15 19 19 C 1.39893 * 119.99767 * 35.01581 * 17 16 15 20 20 N 1.30880 * 119.99961 * 355.54049 * 19 17 16 21 21 Si 1.86796 * 119.99962 * 175.54569 * 19 17 16 22 22 H 1.48496 * 109.47393 * 90.00331 * 21 19 17 23 23 H 1.48502 * 109.47160 * 209.99900 * 21 19 17 24 24 H 1.48496 * 109.47164 * 329.99543 * 21 19 17 25 25 C 1.40875 * 119.67207 * 0.52306 * 16 15 14 26 26 C 1.36367 * 119.82519 * 359.72935 * 25 16 15 27 27 H 1.09002 * 109.46946 * 308.37807 * 1 2 3 28 28 H 1.08997 * 109.47378 * 68.37599 * 1 2 3 29 29 H 1.08998 * 109.47533 * 188.37901 * 1 2 3 30 30 H 0.97006 * 119.99822 * 245.00402 * 5 2 1 31 31 H 1.09003 * 109.46737 * 45.00400 * 6 5 2 32 32 H 1.09003 * 109.47395 * 285.00052 * 6 5 2 33 33 H 1.08995 * 109.47288 * 60.00132 * 7 6 5 34 34 H 1.09003 * 109.46821 * 300.00166 * 7 6 5 35 35 H 1.09001 * 109.47538 * 59.99372 * 8 7 6 36 36 H 1.09003 * 109.47064 * 299.99617 * 8 7 6 37 37 H 0.96997 * 119.99714 * 359.97438 * 9 8 7 38 38 H 0.96999 * 120.00338 * 4.28557 * 12 10 9 39 39 H 1.07999 * 119.90930 * 0.02712 * 14 13 12 40 40 H 1.07999 * 120.08778 * 179.70269 * 15 14 13 41 41 H 0.97001 * 119.99957 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.08670 * 179.70906 * 25 16 15 43 43 H 1.08005 * 119.91570 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 1.8907 -1.9705 1.8510 7 6 2.6874 -2.3829 3.0904 8 6 2.3365 -3.8239 3.4661 9 7 3.0989 -4.2186 4.6532 10 6 2.9505 -5.4548 5.1692 11 8 2.1835 -6.2423 4.6497 12 7 3.6523 -5.8180 6.2610 13 6 3.5670 -7.1221 6.7412 14 6 2.3583 -7.8137 6.6607 15 6 2.2655 -9.0890 7.1345 16 6 3.3973 -9.7118 7.6965 17 6 3.3106 -11.0336 8.1843 18 1 3.8795 -11.3265 9.0543 19 6 2.4878 -11.9641 7.5407 20 7 1.7321 -11.5879 6.5405 21 14 2.4677 -13.7434 8.1089 22 1 1.4268 -13.9178 9.1536 23 1 2.1642 -14.6281 6.9554 24 1 3.7960 -14.0992 8.6694 25 6 4.6145 -9.0069 7.7745 26 6 4.6905 -7.7303 7.3011 27 1 -0.3633 0.6380 0.8056 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3634 -1.0166 0.1497 30 1 2.6920 -0.0235 2.1257 31 1 2.1393 -2.6333 1.0221 32 1 0.8242 -2.0404 2.0648 33 1 2.4389 -1.7201 3.9192 34 1 3.7540 -2.3130 2.8765 35 1 2.5853 -4.4865 2.6371 36 1 1.2699 -3.8942 3.6798 37 1 3.7105 -3.5902 5.0678 38 1 4.2168 -5.1709 6.7121 39 1 1.4927 -7.3363 6.2259 40 1 1.3278 -9.6215 7.0758 41 1 1.1619 -12.2332 6.0941 42 1 5.4851 -9.4762 8.2083 43 1 5.6231 -7.1887 7.3598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298474063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:45 Heat of formation + Delta-G solvation = -79.365974 kcal Electronic energy + Delta-G solvation = -25790.861450 eV Core-core repulsion = 21770.118395 eV Total energy + Delta-G solvation = -4020.743055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.92129 -37.72727 -37.52329 -36.82975 -36.38872 -34.74822 -34.25201 -32.87495 -30.98941 -29.99560 -29.44601 -28.75386 -25.74004 -24.43714 -22.30527 -21.47731 -21.02343 -20.03520 -19.85501 -18.19463 -17.75848 -17.24897 -17.03941 -16.80749 -16.48943 -16.06518 -15.45036 -15.18492 -14.80866 -14.57928 -14.05951 -13.89239 -13.85388 -13.72275 -13.42947 -13.14894 -12.91135 -12.64711 -12.55853 -12.45350 -12.12925 -12.00635 -11.82275 -11.78723 -11.59464 -11.43053 -11.41259 -11.13697 -10.89288 -10.46869 -10.02239 -9.97190 -9.85093 -9.58404 -9.08506 -8.91499 -8.72782 -7.47919 -6.82900 -6.55193 -4.28880 -0.22891 2.19093 2.71024 3.00282 3.08899 3.13010 3.14625 3.21228 3.32198 3.70320 3.71692 4.02028 4.18623 4.33893 4.42304 4.50775 4.58821 4.66437 4.76899 5.01605 5.11519 5.16941 5.19382 5.48039 5.69255 5.74661 5.80220 6.16403 6.40210 6.43182 6.54906 6.82762 6.86378 7.08699 7.18993 7.32108 7.41352 7.69136 7.86337 8.05621 8.13685 8.33896 8.48931 8.71967 8.97040 8.97959 9.12626 10.35964 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028680 B = 0.001559 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.069053 B =17953.291335 C =18592.913230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.616 3.384 3 O -0.961 6.961 4 O -0.955 6.955 5 N -1.120 6.120 6 C 0.115 3.885 7 C -0.137 4.137 8 C 0.140 3.860 9 N -0.754 5.754 10 C 0.693 3.307 11 O -0.573 6.573 12 N -0.668 5.668 13 C 0.024 3.976 14 C -0.094 4.094 15 C -0.143 4.143 16 C 0.098 3.902 17 C -0.464 4.464 18 H 0.075 0.925 19 C 0.069 3.931 20 N -0.809 5.809 21 Si 0.915 3.085 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.203 4.203 26 C -0.116 4.116 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.418 0.582 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.392 0.608 38 H 0.391 0.609 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.278 0.722 42 H 0.096 0.904 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 22.799 -8.380 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.708 3.292 3 O -0.951 6.951 4 O -0.945 6.945 5 N -0.880 5.880 6 C -0.011 4.011 7 C -0.177 4.177 8 C 0.015 3.985 9 N -0.412 5.412 10 C 0.394 3.606 11 O -0.449 6.449 12 N -0.314 5.314 13 C -0.069 4.069 14 C -0.114 4.114 15 C -0.163 4.163 16 C 0.095 3.905 17 C -0.495 4.495 18 H 0.093 0.907 19 C -0.146 4.146 20 N -0.436 5.436 21 Si 0.740 3.260 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.223 4.223 26 C -0.137 4.137 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.253 0.747 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.225 0.775 38 H 0.223 0.777 39 H 0.126 0.874 40 H 0.148 0.852 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.697 22.101 -9.887 24.362 hybrid contribution 0.120 -0.066 1.097 1.105 sum -2.577 22.035 -8.790 23.864 Atomic orbital electron populations 1.30527 1.28330 1.11837 1.11665 1.04673 0.77557 0.73782 0.73227 1.93627 1.78027 1.37777 1.85717 1.93638 1.76941 1.61743 1.62143 1.55568 1.74408 1.21360 1.36660 1.21241 0.99368 0.81644 0.98881 1.21937 1.01563 0.96643 0.97516 1.21005 0.96291 0.93594 0.87622 1.45051 1.49082 1.14478 1.32544 1.16018 0.82065 0.81834 0.80684 1.90944 1.40046 1.51073 1.62866 1.42098 1.49050 1.12098 1.28180 1.17090 0.95274 0.84384 1.10154 1.20667 0.95390 0.95830 0.99524 1.21301 0.99797 0.92751 1.02462 1.17727 0.90129 0.92443 0.90166 1.19457 1.23072 0.94588 1.12399 0.90715 1.25882 0.93441 1.01290 0.94031 1.69795 1.19852 1.36149 1.17792 0.86214 0.79462 0.81511 0.78842 1.19584 1.20350 1.18806 1.20669 0.97416 0.95074 1.09145 1.20050 0.94694 0.95638 1.03310 0.85210 0.85294 0.85202 0.74706 0.89479 0.91230 0.90435 0.90189 0.91223 0.91397 0.77482 0.77651 0.87354 0.85249 0.91139 0.88578 0.89241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.69 10.89 101.05 1.10 -0.59 16 2 S 2.62 14.91 6.10 -107.50 -0.66 14.26 16 3 O -0.96 -8.87 18.08 -57.54 -1.04 -9.91 16 4 O -0.95 -9.48 17.50 -57.54 -1.01 -10.49 16 5 N -1.12 -4.80 5.89 -10.61 -0.06 -4.86 16 6 C 0.12 0.54 6.13 -4.04 -0.02 0.52 16 7 C -0.14 -0.73 5.47 -26.73 -0.15 -0.87 16 8 C 0.14 1.31 5.67 -4.04 -0.02 1.29 16 9 N -0.75 -8.53 5.56 -65.23 -0.36 -8.89 16 10 C 0.69 12.03 8.39 -86.92 -0.73 11.30 16 11 O -0.57 -12.77 13.76 5.29 0.07 -12.69 16 12 N -0.67 -11.48 5.31 -14.10 -0.07 -11.55 16 13 C 0.02 0.52 6.31 -83.57 -0.53 0.00 16 14 C -0.09 -2.35 8.61 -39.79 -0.34 -2.69 16 15 C -0.14 -3.86 8.61 -39.26 -0.34 -4.20 16 16 C 0.10 2.64 5.55 -106.79 -0.59 2.05 16 17 C -0.46 -12.47 9.02 -37.85 -0.34 -12.81 16 18 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 19 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 20 N -0.81 -21.77 10.61 55.54 0.59 -21.18 16 21 Si 0.91 19.26 29.56 -169.99 -5.03 14.23 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.20 -4.91 9.74 -39.26 -0.38 -5.30 16 26 C -0.12 -2.53 9.90 -39.79 -0.39 -2.93 16 27 H 0.13 0.16 8.14 -51.92 -0.42 -0.27 16 28 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.42 1.25 8.62 -34.48 -0.30 0.95 16 31 H 0.09 0.48 7.69 -51.93 -0.40 0.08 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.39 3.08 8.49 -40.82 -0.35 2.73 16 38 H 0.39 5.04 8.83 -40.82 -0.36 4.68 16 39 H 0.11 2.74 6.22 -52.49 -0.33 2.41 16 40 H 0.13 3.65 6.15 -52.49 -0.32 3.33 16 41 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 42 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 43 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -38.34 376.80 -10.55 -48.89 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.83 Total: 9.09 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -2.84 Total: -12.57 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.09 Total: -46.49 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.97 Total: -33.09 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Atomic # 16 Polarization: 14.91 SS G_CDS: -0.66 Total: 14.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.34 -10.55 -48.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298474063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.477 kcal (2) G-P(sol) polarization free energy of solvation -38.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds