Wall clock time and date at job start Sat Apr 11 2020 06:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54383 * 2 1 4 4 O 1.42103 * 110.54349 * 223.24441 * 2 1 3 5 5 N 1.65605 * 104.44972 * 111.62219 * 2 1 3 6 6 C 1.46500 * 120.00073 * 64.99695 * 5 2 1 7 7 C 1.53000 * 109.47148 * 165.00237 * 6 5 2 8 8 C 1.52995 * 109.47157 * 180.02562 * 7 6 5 9 9 N 1.46504 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.34775 * 119.99968 * 179.97438 * 9 8 7 11 11 O 1.21581 * 120.00275 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99660 * 179.97438 * 10 9 8 13 13 C 1.39238 * 119.99647 * 184.29115 * 12 10 9 14 14 C 1.39490 * 119.83647 * 324.69823 * 13 12 10 15 15 C 1.36364 * 120.17166 * 180.30102 * 14 13 12 16 16 C 1.40873 * 119.82804 * 359.47909 * 15 14 13 17 17 C 1.41159 * 120.16700 * 180.25259 * 16 15 14 18 18 H 1.07994 * 120.00020 * 215.02006 * 17 16 15 19 19 C 1.39893 * 119.99767 * 35.01581 * 17 16 15 20 20 N 1.30880 * 119.99961 * 355.54049 * 19 17 16 21 21 Si 1.86796 * 119.99962 * 175.54569 * 19 17 16 22 22 H 1.48496 * 109.47393 * 90.00331 * 21 19 17 23 23 H 1.48502 * 109.47160 * 209.99900 * 21 19 17 24 24 H 1.48496 * 109.47164 * 329.99543 * 21 19 17 25 25 C 1.40875 * 119.67207 * 0.52306 * 16 15 14 26 26 C 1.36367 * 119.82519 * 359.72935 * 25 16 15 27 27 H 1.09002 * 109.46946 * 308.37807 * 1 2 3 28 28 H 1.08997 * 109.47378 * 68.37599 * 1 2 3 29 29 H 1.08998 * 109.47533 * 188.37901 * 1 2 3 30 30 H 0.97006 * 119.99822 * 245.00402 * 5 2 1 31 31 H 1.09003 * 109.46737 * 45.00400 * 6 5 2 32 32 H 1.09003 * 109.47395 * 285.00052 * 6 5 2 33 33 H 1.08995 * 109.47288 * 60.00132 * 7 6 5 34 34 H 1.09003 * 109.46821 * 300.00166 * 7 6 5 35 35 H 1.09001 * 109.47538 * 59.99372 * 8 7 6 36 36 H 1.09003 * 109.47064 * 299.99617 * 8 7 6 37 37 H 0.96997 * 119.99714 * 359.97438 * 9 8 7 38 38 H 0.96999 * 120.00338 * 4.28557 * 12 10 9 39 39 H 1.07999 * 119.90930 * 0.02712 * 14 13 12 40 40 H 1.07999 * 120.08778 * 179.70269 * 15 14 13 41 41 H 0.97001 * 119.99957 * 179.97438 * 20 19 17 42 42 H 1.07996 * 120.08670 * 179.70906 * 25 16 15 43 43 H 1.08005 * 119.91570 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 1.8907 -1.9705 1.8510 7 6 2.6874 -2.3829 3.0904 8 6 2.3365 -3.8239 3.4661 9 7 3.0989 -4.2186 4.6532 10 6 2.9505 -5.4548 5.1692 11 8 2.1835 -6.2423 4.6497 12 7 3.6523 -5.8180 6.2610 13 6 3.5670 -7.1221 6.7412 14 6 2.3583 -7.8137 6.6607 15 6 2.2655 -9.0890 7.1345 16 6 3.3973 -9.7118 7.6965 17 6 3.3106 -11.0336 8.1843 18 1 3.8795 -11.3265 9.0543 19 6 2.4878 -11.9641 7.5407 20 7 1.7321 -11.5879 6.5405 21 14 2.4677 -13.7434 8.1089 22 1 1.4268 -13.9178 9.1536 23 1 2.1642 -14.6281 6.9554 24 1 3.7960 -14.0992 8.6694 25 6 4.6145 -9.0069 7.7745 26 6 4.6905 -7.7303 7.3011 27 1 -0.3633 0.6380 0.8056 28 1 -0.3634 0.3787 -0.9553 29 1 -0.3634 -1.0166 0.1497 30 1 2.6920 -0.0235 2.1257 31 1 2.1393 -2.6333 1.0221 32 1 0.8242 -2.0404 2.0648 33 1 2.4389 -1.7201 3.9192 34 1 3.7540 -2.3130 2.8765 35 1 2.5853 -4.4865 2.6371 36 1 1.2699 -3.8942 3.6798 37 1 3.7105 -3.5902 5.0678 38 1 4.2168 -5.1709 6.7121 39 1 1.4927 -7.3363 6.2259 40 1 1.3278 -9.6215 7.0758 41 1 1.1619 -12.2332 6.0941 42 1 5.4851 -9.4762 8.2083 43 1 5.6231 -7.1887 7.3598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298474063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:44 Heat of formation + Delta-G solvation = -111.144643 kcal Electronic energy + Delta-G solvation = -25792.239476 eV Core-core repulsion = 21770.118395 eV Total energy + Delta-G solvation = -4022.121081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.36283 -39.27341 -38.19517 -37.56713 -36.99148 -36.15288 -35.50654 -34.62025 -31.88760 -31.33277 -30.45728 -30.23433 -27.04649 -25.69922 -23.28798 -22.91297 -22.64005 -21.52905 -20.37511 -19.33440 -19.17115 -18.52750 -18.12070 -17.41588 -17.25688 -17.02573 -16.79807 -16.21647 -15.93865 -15.70596 -15.57932 -15.20326 -14.80685 -14.46953 -14.23807 -14.00899 -13.92869 -13.85502 -13.71833 -13.56146 -13.27547 -13.18628 -13.07831 -12.84076 -12.64026 -12.55555 -12.44851 -12.28653 -12.17038 -11.87815 -11.76528 -11.67131 -11.29218 -10.88899 -10.51418 -10.35695 -10.03700 -9.40486 -8.66303 -8.46100 -6.28702 -0.64319 0.90181 1.17597 1.40179 1.48490 1.55626 1.70383 1.91839 2.23657 2.27693 2.86307 2.91888 3.29953 3.43561 3.73626 3.86648 4.01975 4.07840 4.11429 4.24316 4.47601 4.53165 4.60596 4.64722 4.67013 4.86438 4.99113 5.04400 5.15438 5.19038 5.20072 5.27689 5.37641 5.47033 5.54813 5.74631 5.84905 6.13658 6.15830 6.19422 6.24948 6.42274 6.75706 7.00143 7.07280 7.21891 7.71671 8.46992 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.028680 B = 0.001559 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.069053 B =17953.291335 C =18592.913230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.624 3.376 3 O -1.001 7.001 4 O -1.005 7.005 5 N -1.114 6.114 6 C 0.110 3.890 7 C -0.123 4.123 8 C 0.135 3.865 9 N -0.727 5.727 10 C 0.689 3.311 11 O -0.627 6.627 12 N -0.659 5.659 13 C 0.041 3.959 14 C -0.109 4.109 15 C -0.167 4.167 16 C 0.062 3.938 17 C -0.498 4.498 18 H 0.079 0.921 19 C 0.021 3.979 20 N -0.849 5.849 21 Si 0.990 3.010 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.256 1.256 25 C -0.208 4.208 26 C -0.110 4.110 27 H 0.151 0.849 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.426 0.574 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.414 0.586 38 H 0.416 0.584 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.281 0.719 42 H 0.112 0.888 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.606 24.598 -7.783 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.720 3.280 3 O -0.992 6.992 4 O -0.995 6.995 5 N -0.875 5.875 6 C -0.017 4.017 7 C -0.163 4.163 8 C 0.010 3.990 9 N -0.385 5.385 10 C 0.389 3.611 11 O -0.507 6.507 12 N -0.307 5.307 13 C -0.053 4.053 14 C -0.129 4.129 15 C -0.187 4.187 16 C 0.059 3.941 17 C -0.529 4.529 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.477 5.477 21 Si 0.811 3.189 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.180 1.180 25 C -0.228 4.228 26 C -0.131 4.131 27 H 0.170 0.830 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.262 0.738 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.253 0.747 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.928 24.010 -9.276 25.812 hybrid contribution -0.124 -0.404 0.855 0.954 sum -2.052 23.606 -8.421 25.147 Atomic orbital electron populations 1.30349 1.23505 1.13609 1.13396 1.04120 0.79034 0.72119 0.72684 1.93570 1.79979 1.39419 1.86233 1.93576 1.79199 1.62765 1.63998 1.55278 1.74939 1.21251 1.36025 1.21318 1.00810 0.81432 0.98155 1.21826 1.01915 0.94012 0.98517 1.21174 0.95920 0.95816 0.86062 1.44837 1.48764 1.12557 1.32351 1.16269 0.81286 0.83038 0.80485 1.90925 1.42243 1.53202 1.64310 1.41851 1.49518 1.10858 1.28481 1.17128 0.94105 0.86030 1.08022 1.20683 0.96633 0.95598 1.00036 1.21165 0.99299 0.93743 1.04501 1.18070 0.91207 0.93289 0.91491 1.19746 1.24525 0.95308 1.13283 0.90309 1.26837 0.92562 1.05826 0.93760 1.69920 1.20851 1.37726 1.19192 0.85080 0.79821 0.75521 0.78462 1.18690 1.19859 1.17960 1.20939 0.96891 0.96076 1.08867 1.20414 0.96182 0.94938 1.01527 0.83044 0.84048 0.83586 0.73832 0.90750 0.88780 0.88103 0.89788 0.92977 0.91730 0.74913 0.74665 0.88414 0.87863 0.90847 0.87004 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.39 10.89 113.37 1.23 -0.15 16 2 S 2.62 27.53 6.10 -56.49 -0.34 27.19 16 3 O -1.00 -18.14 18.08 -127.65 -2.31 -20.45 16 4 O -1.01 -20.16 17.50 -127.65 -2.23 -22.39 16 5 N -1.11 -7.45 5.89 -187.48 -1.10 -8.55 16 6 C 0.11 0.79 6.13 86.38 0.53 1.32 16 7 C -0.12 -0.95 5.47 30.59 0.17 -0.79 16 8 C 0.14 2.29 5.67 86.38 0.49 2.78 16 9 N -0.73 -14.67 5.56 -478.54 -2.66 -17.33 16 10 C 0.69 22.94 8.39 179.05 1.50 24.44 16 11 O -0.63 -28.20 13.76 -3.97 -0.05 -28.26 16 12 N -0.66 -21.10 5.31 -316.78 -1.68 -22.78 16 13 C 0.04 1.79 6.31 38.57 0.24 2.03 16 14 C -0.11 -5.62 8.61 22.13 0.19 -5.43 16 15 C -0.17 -9.46 8.61 22.48 0.19 -9.26 16 16 C 0.06 3.43 5.55 -21.27 -0.12 3.31 16 17 C -0.50 -27.53 9.02 23.39 0.21 -27.32 16 18 H 0.08 4.11 7.85 -2.91 -0.02 4.09 16 19 C 0.02 1.12 5.42 85.24 0.46 1.58 16 20 N -0.85 -47.81 10.61 21.82 0.23 -47.58 16 21 Si 0.99 40.17 29.56 68.60 2.03 42.20 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 25 C -0.21 -9.93 9.74 22.48 0.22 -9.71 16 26 C -0.11 -4.55 9.90 22.13 0.22 -4.33 16 27 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.43 1.64 8.62 -96.74 -0.83 0.80 16 31 H 0.07 0.75 7.69 -2.39 -0.02 0.74 16 32 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.41 4.92 8.49 -92.71 -0.79 4.13 16 38 H 0.42 9.12 8.83 -92.71 -0.82 8.31 16 39 H 0.10 5.17 6.22 -2.91 -0.02 5.15 16 40 H 0.10 6.28 6.15 -2.91 -0.02 6.26 16 41 H 0.28 14.53 8.30 -92.71 -0.77 13.76 16 42 H 0.11 4.89 8.06 -2.91 -0.02 4.86 16 43 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -88.71 376.80 -3.95 -92.66 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -1.37 Total: 26.82 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: 5.54 Total: -21.52 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -5.21 Total: -96.24 kcal Atomic # 8 Polarization: -66.50 SS G_CDS: -4.60 Total: -71.10 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 27.53 SS G_CDS: -0.34 Total: 27.19 kcal Total: -88.71 -3.95 -92.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298474063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.487 kcal (2) G-P(sol) polarization free energy of solvation -88.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds