Wall clock time and date at job start Sat Apr 11 2020 06:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00322 * 2 1 4 4 C 1.50696 * 109.47034 * 275.57159 * 3 2 1 5 5 H 1.08007 * 120.00088 * 4.71031 * 4 3 2 6 6 C 1.37873 * 120.00298 * 184.71367 * 4 3 2 7 7 N 1.31520 * 119.99681 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00399 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47071 * 90.00109 * 8 6 4 10 10 H 1.48506 * 109.47497 * 210.00099 * 8 6 4 11 11 H 1.48505 * 109.47305 * 330.00210 * 8 6 4 12 12 S 1.65603 * 119.99691 * 179.97438 * 2 1 3 13 13 O 1.42102 * 106.40005 * 159.57716 * 12 2 1 14 14 O 1.42091 * 106.40255 * 26.65429 * 12 2 1 15 15 N 1.65602 * 107.21888 * 273.11137 * 12 2 1 16 16 C 1.46497 * 119.99871 * 62.77839 * 15 12 2 17 17 C 1.53000 * 109.47173 * 164.44235 * 16 15 12 18 18 C 1.50703 * 109.46809 * 179.97438 * 17 16 15 19 19 C 1.38380 * 119.92974 * 270.01839 * 18 17 16 20 20 C 1.38340 * 120.29645 * 180.02562 * 19 18 17 21 21 C 1.37981 * 120.13901 * 359.70238 * 20 19 18 22 22 C 1.39557 * 119.85571 * 0.53078 * 21 20 19 23 23 C 1.47845 * 120.14247 * 179.76707 * 22 21 20 24 24 N 1.34765 * 120.00432 * 359.72088 * 23 22 21 25 25 O 1.21561 * 119.99677 * 179.72660 * 23 22 21 26 26 C 1.37939 * 119.92850 * 90.00651 * 18 17 16 27 27 H 1.09006 * 109.47544 * 270.00239 * 1 2 3 28 28 H 1.09001 * 109.46942 * 30.00292 * 1 2 3 29 29 H 1.09005 * 109.47310 * 150.00289 * 1 2 3 30 30 H 1.09004 * 109.46939 * 35.56676 * 3 2 1 31 31 H 1.08991 * 109.47261 * 155.56647 * 3 2 1 32 32 H 0.97006 * 120.00017 * 179.97438 * 7 6 4 33 33 H 0.97001 * 120.00447 * 242.78007 * 15 12 2 34 34 H 1.08997 * 109.47298 * 44.44028 * 16 15 12 35 35 H 1.09005 * 109.47431 * 284.44293 * 16 15 12 36 36 H 1.08998 * 109.46829 * 60.00414 * 17 16 15 37 37 H 1.08994 * 109.47035 * 299.99598 * 17 16 15 38 38 H 1.08000 * 119.85491 * 0.02562 * 19 18 17 39 39 H 1.07991 * 119.93115 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.07187 * 180.27572 * 21 20 19 41 41 H 0.96998 * 120.00308 * 0.02562 * 24 23 22 42 42 H 0.97003 * 120.00157 * 179.72046 * 24 23 22 43 43 H 1.08000 * 120.06815 * 0.02562 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3292 1.7727 -1.4141 5 1 1.8446 1.2455 -2.2226 6 6 3.0684 2.9067 -1.6758 7 7 3.6582 3.5489 -0.6911 8 14 3.2323 3.5310 -3.4286 9 1 2.1304 4.4829 -3.7201 10 1 4.5376 4.2209 -3.5885 11 1 3.1591 2.3856 -4.3710 12 16 2.2929 -1.4342 0.0006 13 8 3.5999 -1.1432 -0.4752 14 8 1.4384 -2.3910 -0.6104 15 7 2.4636 -1.9010 1.5803 16 6 1.2783 -2.1952 2.3894 17 6 1.6962 -2.9590 3.6474 18 6 0.4769 -3.2610 4.4800 19 6 0.0592 -2.3610 5.4445 20 6 -1.0588 -2.6309 6.2134 21 6 -1.7685 -3.7980 6.0184 22 6 -1.3498 -4.7122 5.0507 23 6 -2.1025 -5.9671 4.8400 24 7 -3.1923 -6.2329 5.5870 25 8 -1.7384 -6.7593 3.9929 26 6 -0.2206 -4.4339 4.2786 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6552 2.0014 0.5978 31 1 3.1894 1.1155 0.4250 32 1 4.1786 4.3466 -0.8753 33 1 3.3484 -1.9796 1.9700 34 1 0.5840 -2.8029 1.8091 35 1 0.7927 -1.2621 2.6753 36 1 2.3904 -2.3511 4.2277 37 1 2.1816 -3.8921 3.3615 38 1 0.6084 -1.4438 5.5978 39 1 -1.3793 -1.9245 6.9648 40 1 -2.6437 -4.0055 6.6162 41 1 -3.4830 -5.6007 6.2627 42 1 -3.6884 -7.0544 5.4459 43 1 0.1066 -5.1356 3.5256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338715509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:02 Heat of formation + Delta-G solvation = -95.054660 kcal Electronic energy + Delta-G solvation = -27011.167413 eV Core-core repulsion = 22989.744046 eV Total energy + Delta-G solvation = -4021.423367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49527 -38.77795 -36.62218 -35.93356 -35.45490 -35.12317 -34.24110 -32.45267 -32.38831 -31.38481 -28.17892 -27.75751 -25.05956 -24.53978 -23.60039 -22.28110 -21.90255 -20.54223 -18.97622 -18.33655 -17.28366 -17.07817 -16.66297 -16.42764 -16.38452 -15.94846 -15.53825 -15.11374 -15.07071 -14.90729 -14.31593 -14.23448 -14.00759 -13.53362 -13.32845 -13.23928 -13.06576 -12.32101 -12.22912 -12.14827 -12.08199 -11.72927 -11.58169 -11.50219 -11.38722 -11.13926 -11.09858 -11.05036 -10.67891 -10.49490 -10.41834 -10.12537 -10.02704 -9.75254 -9.37775 -9.29538 -9.11970 -8.43716 -8.05283 -6.05792 -4.09689 0.47953 0.95485 1.27343 2.51335 3.08601 3.32156 3.38645 3.44165 3.46425 3.56107 4.14423 4.35574 4.37510 4.45802 4.48538 4.71949 4.85292 4.86807 4.96871 5.09048 5.16452 5.29652 5.30285 5.45850 5.58214 5.63289 5.71179 5.76621 5.89399 5.97494 5.99648 6.08989 6.23132 6.31968 6.34648 6.51268 6.56992 6.90214 7.10263 7.27542 7.42605 7.64015 7.85633 7.92030 8.21573 8.92891 9.55642 11.02853 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021327 B = 0.002351 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.571192 B =11905.691407 C =12245.326068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.782 3.218 13 O -0.964 6.964 14 O -0.997 6.997 15 N -1.136 6.136 16 C 0.125 3.875 17 C -0.089 4.089 18 C -0.086 4.086 19 C -0.084 4.084 20 C -0.125 4.125 21 C -0.090 4.090 22 C -0.140 4.140 23 C 0.563 3.437 24 N -0.852 5.852 25 O -0.537 6.537 26 C -0.052 4.052 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.263 0.737 33 H 0.412 0.588 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.400 0.600 42 H 0.405 0.595 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 -13.565 19.637 26.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.947 6.947 14 O -0.980 6.980 15 N -0.894 5.894 16 C -0.001 4.001 17 C -0.128 4.128 18 C -0.087 4.087 19 C -0.102 4.102 20 C -0.143 4.143 21 C -0.109 4.109 22 C -0.143 4.143 23 C 0.349 3.651 24 N -0.417 5.417 25 O -0.414 6.414 26 C -0.071 4.071 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.245 0.755 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.230 0.770 42 H 0.236 0.764 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.542 -14.255 18.232 25.862 hybrid contribution -0.093 0.719 0.003 0.725 sum -11.635 -13.535 18.235 25.517 Atomic orbital electron populations 1.21378 0.80318 1.03547 1.00077 1.57592 1.14207 1.23308 1.88715 1.19062 0.91210 0.78643 0.97621 1.21503 1.31715 1.10259 0.93467 0.92151 1.24938 0.95028 0.96561 0.97512 1.69920 1.33265 1.18926 1.31330 0.86506 0.77434 0.78905 0.84660 1.20625 1.21051 1.19712 1.01943 0.73379 0.72922 0.72812 1.93644 1.38673 1.84583 1.77830 1.93528 1.68997 1.61108 1.74415 1.56273 1.13826 1.85919 1.33431 1.21172 0.87508 0.99509 0.91951 1.20832 0.94897 1.01958 0.95078 1.19793 0.97372 0.94378 0.97149 1.21380 0.96006 0.98767 0.94085 1.21101 0.95774 0.97205 1.00232 1.21255 0.99118 0.93910 0.96628 1.19841 0.98533 0.95598 1.00373 1.18326 0.80245 0.85994 0.80507 1.43751 1.30606 1.26342 1.40965 1.90847 1.67911 1.48937 1.33711 1.21249 0.92586 0.96226 0.97071 0.94399 0.90393 0.91594 0.95046 0.93940 0.92701 0.75482 0.90484 0.91636 0.89708 0.89724 0.85062 0.85182 0.85763 0.77009 0.76415 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.69 59.84 0.64 2.23 16 2 N -1.00 -20.48 3.23 -123.06 -0.40 -20.88 16 3 C 0.26 6.40 5.10 -5.20 -0.03 6.37 16 4 C -0.53 -14.92 9.38 -34.44 -0.32 -15.24 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 8 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 S 2.78 55.03 6.09 -107.50 -0.65 54.38 16 13 O -0.96 -23.10 16.99 -57.17 -0.97 -24.07 16 14 O -1.00 -21.11 16.34 -57.17 -0.93 -22.04 16 15 N -1.14 -16.15 6.05 -10.61 -0.06 -16.21 16 16 C 0.13 1.47 6.24 -4.04 -0.03 1.44 16 17 C -0.09 -0.80 5.48 -27.88 -0.15 -0.95 16 18 C -0.09 -0.77 5.13 -104.68 -0.54 -1.30 16 19 C -0.08 -0.63 9.69 -39.49 -0.38 -1.01 16 20 C -0.13 -0.79 10.03 -39.64 -0.40 -1.18 16 21 C -0.09 -0.57 9.54 -39.18 -0.37 -0.94 16 22 C -0.14 -1.26 5.87 -104.97 -0.62 -1.87 16 23 C 0.56 5.50 8.05 -12.33 -0.10 5.40 16 24 N -0.85 -4.41 8.82 30.53 0.27 -4.14 16 25 O -0.54 -7.59 17.18 5.31 0.09 -7.50 16 26 C -0.05 -0.52 9.24 -39.19 -0.36 -0.89 16 27 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.07 1.07 7.05 -51.93 -0.37 0.71 16 30 H 0.03 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 33 H 0.41 5.02 8.66 -34.48 -0.30 4.72 16 34 H 0.08 0.96 7.79 -51.93 -0.40 0.56 16 35 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.08 0.64 8.08 -51.93 -0.42 0.23 16 37 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 38 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.12 0.37 6.41 -52.49 -0.34 0.03 16 41 H 0.40 0.86 6.86 -40.82 -0.28 0.58 16 42 H 0.40 1.65 8.93 -40.82 -0.36 1.28 16 43 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -38.15 380.30 -9.72 -47.87 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.75 Total: 1.65 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.75 Total: -6.29 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: 0.54 Total: -66.65 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -1.81 Total: -53.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 55.03 SS G_CDS: -0.65 Total: 54.38 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.15 -9.72 -47.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338715509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.188 kcal (2) G-P(sol) polarization free energy of solvation -38.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds