Wall clock time and date at job start Sat Apr 11 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46500 * 120.00140 * 2 1 4 4 C 1.50696 * 109.47379 * 275.00397 * 3 2 1 5 5 H 1.08001 * 119.99810 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00203 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99630 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00551 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46539 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47602 * 119.99915 * 8 6 4 11 11 H 1.48501 * 109.47367 * 240.00613 * 8 6 4 12 12 S 1.65601 * 119.99769 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39971 * 156.45542 * 12 2 1 14 14 O 1.42104 * 106.40031 * 23.53691 * 12 2 1 15 15 N 1.65601 * 107.21735 * 269.99927 * 12 2 1 16 16 C 1.46497 * 119.99949 * 64.99922 * 15 12 2 17 17 H 1.08993 * 110.54409 * 337.61499 * 16 15 12 18 18 C 1.54809 * 110.48720 * 100.23972 * 16 15 12 19 19 C 1.54994 * 102.09507 * 139.55286 * 18 16 15 20 20 O 1.44379 * 103.48995 * 322.97681 * 19 18 16 21 21 C 1.43745 * 106.97825 * 40.05711 * 20 19 18 22 22 H 1.09001 * 109.99860 * 92.98344 * 21 20 19 23 23 C 1.50699 * 109.87753 * 214.06445 * 21 20 19 24 24 C 1.38676 * 120.41624 * 217.83283 * 23 21 20 25 25 C 1.38620 * 118.42038 * 180.02562 * 24 23 21 26 26 C 1.38235 * 119.16331 * 359.97438 * 25 24 23 27 27 N 1.31850 * 120.75840 * 0.02562 * 26 25 24 28 28 C 1.31892 * 121.73050 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46638 * 269.99869 * 1 2 3 30 30 H 1.09002 * 109.46987 * 29.99330 * 1 2 3 31 31 H 1.08998 * 109.47427 * 149.99576 * 1 2 3 32 32 H 1.08999 * 109.46911 * 35.00465 * 3 2 1 33 33 H 1.08999 * 109.47020 * 154.99819 * 3 2 1 34 34 H 0.97005 * 119.99667 * 179.97438 * 7 6 4 35 35 H 0.96999 * 119.99326 * 245.00659 * 15 12 2 36 36 H 1.09002 * 110.90389 * 257.75356 * 18 16 15 37 37 H 1.08998 * 110.90969 * 21.31521 * 18 16 15 38 38 H 1.09002 * 110.61377 * 81.47293 * 19 18 16 39 39 H 1.09000 * 110.62005 * 204.31291 * 19 18 16 40 40 H 1.07997 * 120.78598 * 359.97438 * 24 23 21 41 41 H 1.07998 * 120.42207 * 179.97438 * 25 24 23 42 42 H 1.07996 * 119.61916 * 179.72746 * 26 25 24 43 43 H 1.08001 * 119.61772 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 -1.4153 5 1 1.9282 1.1940 -2.2331 6 6 2.9998 2.9509 -1.6663 7 7 3.5026 3.6474 -0.6703 8 14 3.1776 3.5674 -3.4205 9 1 2.5302 2.6075 -4.3505 10 1 2.5260 4.8958 -3.5469 11 1 4.6184 3.6886 -3.7591 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5451 14 8 1.4113 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5810 16 6 1.3947 -2.1789 2.4392 17 1 0.4836 -1.7278 2.0462 18 6 1.2273 -3.7123 2.5703 19 6 0.8674 -3.8727 4.0693 20 8 1.6781 -2.8704 4.7195 21 6 1.6534 -1.7025 3.8818 22 1 0.8546 -1.0325 4.1998 23 6 2.9794 -0.9903 3.9563 24 6 3.0333 0.3954 3.9528 25 6 4.2751 1.0075 4.0223 26 6 5.4104 0.2219 4.0928 27 7 5.3211 -1.0936 4.0939 28 6 4.1568 -1.7098 4.0290 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6503 2.0042 0.5895 33 1 3.1859 1.1176 0.4343 34 1 3.9661 4.4810 -0.8469 35 1 3.4388 -1.8968 1.9391 36 1 0.4172 -4.0708 1.9352 37 1 2.1593 -4.2267 2.3362 38 1 -0.1919 -3.6749 4.2330 39 1 1.1295 -4.8701 4.4224 40 1 2.1293 0.9836 3.8964 41 1 4.3547 2.0845 4.0213 42 1 6.3818 0.6910 4.1427 43 1 4.1233 -2.7893 4.0326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343211209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:57 Heat of formation + Delta-G solvation = -72.044107 kcal Electronic energy + Delta-G solvation = -29521.338655 eV Core-core repulsion = 25500.913100 eV Total energy + Delta-G solvation = -4020.425555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78803 -39.13865 -36.66147 -35.58186 -35.21525 -34.92925 -32.84210 -32.48037 -31.67426 -30.29581 -27.94039 -27.77963 -25.13612 -23.81111 -23.54752 -22.35946 -22.11237 -20.96146 -19.22023 -17.59773 -17.35857 -16.84707 -16.65073 -16.47452 -16.38227 -15.95138 -15.50642 -15.07730 -14.54384 -14.52447 -14.30592 -13.70448 -13.50708 -13.37320 -13.34762 -13.06468 -12.98317 -12.52202 -12.33609 -12.22546 -11.82158 -11.72751 -11.63346 -11.49767 -11.26387 -11.21839 -11.12300 -11.07447 -10.75554 -10.56929 -10.22902 -10.07103 -9.79817 -9.71277 -9.42900 -9.32724 -8.91546 -8.48820 -8.14191 -6.11099 -4.14664 1.11643 1.13396 1.37491 3.27909 3.36022 3.37233 3.42163 3.54797 3.91737 4.03905 4.30534 4.40541 4.44598 4.54938 4.70274 4.80623 4.87862 4.91585 5.01475 5.04089 5.10697 5.15745 5.24826 5.34603 5.49343 5.55088 5.57777 5.63359 5.81146 5.85967 5.86883 6.03259 6.17768 6.22306 6.27720 6.47763 6.59234 6.75474 6.97975 7.18133 7.35087 7.54318 7.86618 8.02908 8.15550 8.87742 9.50886 10.97494 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.004843 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.363414 B = 5780.317775 C = 7055.704015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.260 3.740 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.777 3.223 13 O -0.961 6.961 14 O -0.995 6.995 15 N -1.123 6.123 16 C 0.133 3.867 17 H 0.104 0.896 18 C -0.171 4.171 19 C 0.046 3.954 20 O -0.365 6.365 21 C 0.119 3.881 22 H 0.090 0.910 23 C -0.133 4.133 24 C -0.058 4.058 25 C -0.158 4.158 26 C 0.099 3.901 27 N -0.484 5.484 28 C 0.106 3.894 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.412 0.588 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.156 0.844 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 -9.932 12.946 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.838 5.838 3 C 0.138 3.862 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.784 3.216 13 O -0.945 6.945 14 O -0.979 6.979 15 N -0.883 5.883 16 C 0.024 3.976 17 H 0.122 0.878 18 C -0.210 4.210 19 C -0.031 4.031 20 O -0.284 6.284 21 C 0.058 3.942 22 H 0.107 0.893 23 C -0.135 4.135 24 C -0.084 4.084 25 C -0.178 4.178 26 C -0.058 4.058 27 N -0.192 5.192 28 C -0.051 4.051 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.248 0.752 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.154 0.846 41 H 0.158 0.842 42 H 0.174 0.826 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.852 -10.755 12.377 17.100 hybrid contribution -0.496 1.333 -0.778 1.621 sum -5.348 -9.422 11.599 15.872 Atomic orbital electron populations 1.21399 0.80283 1.03745 0.99971 1.57611 1.14185 1.23344 1.88693 1.19022 0.90895 0.78562 0.97679 1.21520 1.36108 1.06286 0.92945 0.92177 1.24911 0.95043 0.96486 0.97469 1.69922 1.37335 1.15286 1.30835 0.86472 0.78056 0.78494 0.84623 1.19649 1.20941 1.20771 1.02112 0.73522 0.73066 0.72870 1.93654 1.40619 1.84756 1.75437 1.93528 1.67529 1.60071 1.76749 1.56570 1.14112 1.85570 1.32010 1.21999 0.89444 0.95287 0.90843 0.87837 1.23685 1.04264 0.95916 0.97158 1.23578 0.95336 0.93002 0.91211 1.88944 1.70972 1.23419 1.45020 1.21768 0.94635 0.88049 0.89701 0.89268 1.20514 0.95752 0.94437 1.02809 1.21409 0.98909 0.93399 0.94698 1.22190 0.93129 1.02063 1.00400 1.22832 0.98974 0.89335 0.94658 1.67736 1.28011 1.11420 1.12064 1.22551 0.86948 1.00524 0.95098 0.94471 0.90191 0.91500 0.94787 0.94575 0.92764 0.75169 0.88825 0.89405 0.91626 0.88461 0.84555 0.84171 0.82641 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.13 59.85 0.61 2.07 16 2 N -1.00 -19.68 3.23 -123.05 -0.40 -20.08 16 3 C 0.26 6.28 5.08 -5.20 -0.03 6.25 16 4 C -0.53 -14.60 9.38 -34.44 -0.32 -14.92 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 S 2.78 54.24 6.02 -107.50 -0.65 53.60 16 13 O -0.96 -23.31 17.11 -57.17 -0.98 -24.29 16 14 O -1.00 -19.91 16.50 -57.17 -0.94 -20.86 16 15 N -1.12 -16.83 4.93 -3.59 -0.02 -16.85 16 16 C 0.13 1.56 3.59 -66.40 -0.24 1.32 16 17 H 0.10 1.10 6.74 -51.93 -0.35 0.75 16 18 C -0.17 -1.67 6.88 -24.72 -0.17 -1.84 16 19 C 0.05 0.37 7.72 38.21 0.29 0.67 16 20 O -0.36 -3.96 10.48 -35.23 -0.37 -4.33 16 21 C 0.12 1.30 3.65 -27.31 -0.10 1.20 16 22 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 23 C -0.13 -1.70 3.78 -104.48 -0.39 -2.09 16 24 C -0.06 -0.75 9.83 -39.28 -0.39 -1.14 16 25 C -0.16 -2.08 10.11 -39.44 -0.40 -2.48 16 26 C 0.10 1.35 11.18 -17.54 -0.20 1.15 16 27 N -0.48 -7.19 10.36 -13.25 -0.14 -7.33 16 28 C 0.11 1.45 8.65 -17.55 -0.15 1.30 16 29 H 0.04 0.45 7.47 -51.93 -0.39 0.07 16 30 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.07 1.00 7.02 -51.93 -0.36 0.64 16 32 H 0.03 0.82 8.11 -51.93 -0.42 0.40 16 33 H 0.04 0.94 7.61 -51.93 -0.40 0.55 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.41 6.25 5.80 -34.46 -0.20 6.05 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 41 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.16 1.91 7.74 -52.49 -0.41 1.51 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -34.58 367.61 -9.68 -44.25 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.86 Total: 5.26 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.58 Total: -6.86 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: 0.18 Total: -68.93 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -2.29 Total: -49.47 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 54.24 SS G_CDS: -0.65 Total: 53.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.58 -9.68 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343211209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.790 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds