Wall clock time and date at job start Sat Apr 11 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46500 * 120.00140 * 2 1 4 4 C 1.50696 * 109.47379 * 275.00397 * 3 2 1 5 5 H 1.08001 * 119.99810 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00203 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99630 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00551 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.46539 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47602 * 119.99915 * 8 6 4 11 11 H 1.48501 * 109.47367 * 240.00613 * 8 6 4 12 12 S 1.65601 * 119.99769 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.39971 * 156.45542 * 12 2 1 14 14 O 1.42104 * 106.40031 * 23.53691 * 12 2 1 15 15 N 1.65601 * 107.21735 * 269.99927 * 12 2 1 16 16 C 1.46497 * 119.99949 * 64.99922 * 15 12 2 17 17 H 1.08993 * 110.54409 * 337.61499 * 16 15 12 18 18 C 1.54809 * 110.48720 * 100.23972 * 16 15 12 19 19 C 1.54994 * 102.09507 * 139.55286 * 18 16 15 20 20 O 1.44379 * 103.48995 * 322.97681 * 19 18 16 21 21 C 1.43745 * 106.97825 * 40.05711 * 20 19 18 22 22 H 1.09001 * 109.99860 * 92.98344 * 21 20 19 23 23 C 1.50699 * 109.87753 * 214.06445 * 21 20 19 24 24 C 1.38676 * 120.41624 * 217.83283 * 23 21 20 25 25 C 1.38620 * 118.42038 * 180.02562 * 24 23 21 26 26 C 1.38235 * 119.16331 * 359.97438 * 25 24 23 27 27 N 1.31850 * 120.75840 * 0.02562 * 26 25 24 28 28 C 1.31892 * 121.73050 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46638 * 269.99869 * 1 2 3 30 30 H 1.09002 * 109.46987 * 29.99330 * 1 2 3 31 31 H 1.08998 * 109.47427 * 149.99576 * 1 2 3 32 32 H 1.08999 * 109.46911 * 35.00465 * 3 2 1 33 33 H 1.08999 * 109.47020 * 154.99819 * 3 2 1 34 34 H 0.97005 * 119.99667 * 179.97438 * 7 6 4 35 35 H 0.96999 * 119.99326 * 245.00659 * 15 12 2 36 36 H 1.09002 * 110.90389 * 257.75356 * 18 16 15 37 37 H 1.08998 * 110.90969 * 21.31521 * 18 16 15 38 38 H 1.09002 * 110.61377 * 81.47293 * 19 18 16 39 39 H 1.09000 * 110.62005 * 204.31291 * 19 18 16 40 40 H 1.07997 * 120.78598 * 359.97438 * 24 23 21 41 41 H 1.07998 * 120.42207 * 179.97438 * 25 24 23 42 42 H 1.07996 * 119.61916 * 179.72746 * 26 25 24 43 43 H 1.08001 * 119.61772 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3415 1.7657 -1.4153 5 1 1.9282 1.1940 -2.2331 6 6 2.9998 2.9509 -1.6663 7 7 3.5026 3.6474 -0.6703 8 14 3.1776 3.5674 -3.4205 9 1 2.5302 2.6075 -4.3505 10 1 2.5260 4.8958 -3.5469 11 1 4.6184 3.6886 -3.7591 12 16 2.2930 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5451 14 8 1.4113 -2.4063 -0.5455 15 7 2.5381 -1.8594 1.5810 16 6 1.3947 -2.1789 2.4392 17 1 0.4836 -1.7278 2.0462 18 6 1.2273 -3.7123 2.5703 19 6 0.8674 -3.8727 4.0693 20 8 1.6781 -2.8704 4.7195 21 6 1.6534 -1.7025 3.8818 22 1 0.8546 -1.0325 4.1998 23 6 2.9794 -0.9903 3.9563 24 6 3.0333 0.3954 3.9528 25 6 4.2751 1.0075 4.0223 26 6 5.4104 0.2219 4.0928 27 7 5.3211 -1.0936 4.0939 28 6 4.1568 -1.7098 4.0290 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5137 31 1 -0.3634 -0.8899 -0.5139 32 1 1.6503 2.0042 0.5895 33 1 3.1859 1.1176 0.4343 34 1 3.9661 4.4810 -0.8469 35 1 3.4388 -1.8968 1.9391 36 1 0.4172 -4.0708 1.9352 37 1 2.1593 -4.2267 2.3362 38 1 -0.1919 -3.6749 4.2330 39 1 1.1295 -4.8701 4.4224 40 1 2.1293 0.9836 3.8964 41 1 4.3547 2.0845 4.0213 42 1 6.3818 0.6910 4.1427 43 1 4.1233 -2.7893 4.0326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343211209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:57 Heat of formation + Delta-G solvation = -98.436319 kcal Electronic energy + Delta-G solvation = -29522.483107 eV Core-core repulsion = 25500.913100 eV Total energy + Delta-G solvation = -4021.570007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72226 -40.04459 -38.31088 -37.23431 -36.88949 -35.97541 -34.50146 -33.82448 -32.63412 -31.23852 -29.67239 -28.76958 -26.77622 -24.72200 -24.55311 -24.21565 -22.92220 -21.92898 -20.58448 -19.12557 -18.47598 -18.43487 -18.20095 -17.66532 -17.45127 -17.01314 -16.90982 -16.40130 -16.03851 -15.44407 -15.36390 -15.05950 -14.95511 -14.71583 -14.36077 -14.14259 -14.01332 -13.95975 -13.82131 -13.54219 -13.36324 -13.18930 -13.04736 -12.94874 -12.80859 -12.51061 -12.44692 -12.42014 -12.35523 -11.97606 -11.96608 -11.72464 -11.01725 -10.76382 -10.59568 -10.51359 -10.32870 -9.92324 -9.78902 -8.20878 -6.31538 -0.38430 0.10764 0.33640 1.36706 1.40201 1.50577 1.97645 2.39218 2.57721 2.69803 2.97398 3.10484 3.38768 3.44346 3.51576 3.63544 3.85671 3.98523 4.01351 4.04812 4.12354 4.15251 4.17769 4.33164 4.48578 4.59677 4.71961 4.79978 4.84002 4.88116 4.92268 5.03692 5.09599 5.17935 5.20224 5.21537 5.28470 5.44506 5.69507 5.73219 5.77954 5.87915 5.99153 6.11590 6.76201 6.99421 7.37110 8.86396 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.004843 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.363414 B = 5780.317775 C = 7055.704015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.999 5.999 3 C 0.279 3.721 4 C -0.550 4.550 5 H 0.048 0.952 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.950 3.050 9 H -0.272 1.272 10 H -0.268 1.268 11 H -0.282 1.282 12 S 2.792 3.208 13 O -1.016 7.016 14 O -1.001 7.001 15 N -1.111 6.111 16 C 0.120 3.880 17 H 0.120 0.880 18 C -0.171 4.171 19 C 0.048 3.952 20 O -0.378 6.378 21 C 0.125 3.875 22 H 0.114 0.886 23 C -0.134 4.134 24 C -0.068 4.068 25 C -0.169 4.169 26 C 0.082 3.918 27 N -0.508 5.508 28 C 0.093 3.907 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.011 0.989 34 H 0.267 0.733 35 H 0.412 0.588 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.172 0.828 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.904 -10.351 13.593 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.842 5.842 3 C 0.156 3.844 4 C -0.590 4.590 5 H 0.067 0.933 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.775 3.225 9 H -0.197 1.197 10 H -0.193 1.193 11 H -0.208 1.208 12 S 2.801 3.199 13 O -1.000 7.000 14 O -0.984 6.984 15 N -0.874 5.874 16 C 0.013 3.987 17 H 0.138 0.862 18 C -0.211 4.211 19 C -0.028 4.028 20 O -0.297 6.297 21 C 0.065 3.935 22 H 0.131 0.869 23 C -0.137 4.137 24 C -0.094 4.094 25 C -0.188 4.188 26 C -0.074 4.074 27 N -0.217 5.217 28 C -0.064 4.064 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.249 0.751 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.172 0.828 41 H 0.169 0.831 42 H 0.189 0.811 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.850 -11.190 13.026 18.488 hybrid contribution 0.081 1.384 -0.923 1.666 sum -6.769 -9.806 12.103 16.984 Atomic orbital electron populations 1.21691 0.77807 1.03819 1.02869 1.57446 1.15800 1.21709 1.89236 1.18537 0.90196 0.80087 0.95624 1.21861 1.36243 1.06535 0.94344 0.93336 1.25646 0.94842 0.96809 1.01035 1.69992 1.37744 1.15665 1.32397 0.85631 0.77924 0.78507 0.80400 1.19661 1.19315 1.20774 1.01383 0.72189 0.72825 0.73550 1.93576 1.43389 1.85491 1.77533 1.93512 1.67363 1.59976 1.77596 1.56181 1.15253 1.85109 1.30868 1.22422 0.88515 0.97034 0.90752 0.86211 1.23706 1.04342 0.94204 0.98824 1.23766 0.96289 0.93205 0.89516 1.88940 1.71806 1.23816 1.45175 1.21787 0.94070 0.88477 0.89171 0.86896 1.20738 0.96469 0.94539 1.01924 1.21719 0.99474 0.93838 0.94388 1.22428 0.93356 1.02772 1.00278 1.23178 1.00102 0.89261 0.94875 1.67716 1.28923 1.12097 1.12941 1.22758 0.87190 1.01045 0.95402 0.90137 0.90980 0.90608 0.94744 0.97120 0.92424 0.75122 0.87804 0.90258 0.89286 0.86849 0.82837 0.83062 0.81071 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.45 10.13 127.77 1.29 3.74 16 2 N -1.00 -38.75 3.23 -543.21 -1.75 -40.50 16 3 C 0.28 13.54 5.08 85.63 0.43 13.97 16 4 C -0.55 -30.62 9.38 25.60 0.24 -30.38 16 5 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 6 C 0.02 0.93 5.46 84.65 0.46 1.39 16 7 N -0.92 -52.31 13.29 21.45 0.28 -52.03 16 8 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 12 S 2.79 108.25 6.02 -56.49 -0.34 107.91 16 13 O -1.02 -50.58 17.11 -128.00 -2.19 -52.77 16 14 O -1.00 -38.92 16.50 -128.00 -2.11 -41.03 16 15 N -1.11 -32.29 4.93 -165.28 -0.82 -33.11 16 16 C 0.12 2.51 3.59 45.98 0.16 2.67 16 17 H 0.12 2.10 6.74 -2.39 -0.02 2.09 16 18 C -0.17 -2.90 6.88 31.89 0.22 -2.68 16 19 C 0.05 0.62 7.72 72.66 0.56 1.18 16 20 O -0.38 -7.17 10.48 -148.98 -1.56 -8.73 16 21 C 0.13 2.42 3.65 30.22 0.11 2.53 16 22 H 0.11 1.69 8.05 -2.39 -0.02 1.67 16 23 C -0.13 -3.28 3.78 -19.78 -0.07 -3.36 16 24 C -0.07 -1.70 9.83 22.47 0.22 -1.48 16 25 C -0.17 -4.44 10.11 22.36 0.23 -4.21 16 26 C 0.08 2.27 11.18 84.69 0.95 3.22 16 27 N -0.51 -15.31 10.36 -195.84 -2.03 -17.34 16 28 C 0.09 2.53 8.65 84.67 0.73 3.26 16 29 H 0.08 1.67 7.47 -2.39 -0.02 1.65 16 30 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.08 2.10 7.02 -2.39 -0.02 2.08 16 32 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 33 H 0.01 0.58 7.61 -2.39 -0.02 0.56 16 34 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 35 H 0.41 12.46 5.80 -96.75 -0.56 11.90 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 41 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 42 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 43 H 0.16 3.96 7.74 -2.91 -0.02 3.94 16 Total: -1.00 -74.88 367.61 -2.48 -77.36 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.47 Total: 24.16 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.54 Total: -10.15 kcal Atomic # 7 Polarization: -138.67 SS G_CDS: -4.31 Total: -142.98 kcal Atomic # 8 Polarization: -96.67 SS G_CDS: -5.86 Total: -102.54 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 108.25 SS G_CDS: -0.34 Total: 107.91 kcal Total: -74.88 -2.48 -77.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343211209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.078 kcal (2) G-P(sol) polarization free energy of solvation -74.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds