Wall clock time and date at job start Sat Apr 11 2020 06:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42101 * 110.54182 * 2 1 4 4 O 1.42098 * 110.54466 * 136.74802 * 2 1 3 5 5 N 1.65599 * 104.44997 * 248.37554 * 2 1 3 6 6 C 1.39671 * 119.99782 * 296.76511 * 5 2 1 7 7 C 1.38934 * 120.07391 * 284.53368 * 6 5 2 8 8 C 1.38088 * 119.92328 * 179.74940 * 7 6 5 9 9 C 1.38306 * 120.07359 * 0.53286 * 8 7 6 10 10 C 1.38261 * 120.14999 * 359.74072 * 9 8 7 11 11 C 1.50705 * 119.96011 * 180.02562 * 10 9 8 12 12 N 1.46504 * 109.47223 * 269.98051 * 11 10 9 13 13 C 1.34768 * 119.99871 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00299 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00045 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00261 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.46938 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.46892 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99787 * 359.97438 * 18 17 16 20 20 C 1.37869 * 120.00094 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00186 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47177 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47258 * 119.99661 * 22 20 18 25 25 H 1.48502 * 109.47012 * 239.99859 * 22 20 18 26 26 C 1.38127 * 120.07616 * 359.97438 * 10 9 8 27 27 H 1.09002 * 109.46949 * 55.82575 * 1 2 3 28 28 H 1.08999 * 109.46964 * 175.82530 * 1 2 3 29 29 H 1.08995 * 109.46846 * 295.82372 * 1 2 3 30 30 H 0.97000 * 120.00269 * 116.76071 * 5 2 1 31 31 H 1.08002 * 120.03955 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.95617 * 180.25373 * 8 7 6 33 33 H 1.08006 * 119.92041 * 179.77104 * 9 8 7 34 34 H 1.08999 * 109.46925 * 29.97955 * 11 10 9 35 35 H 1.09004 * 109.47101 * 149.98151 * 11 10 9 36 36 H 0.97000 * 119.99378 * 0.02562 * 12 11 10 37 37 H 0.97005 * 119.99959 * 0.02562 * 15 13 12 38 38 H 1.09001 * 109.47033 * 299.99724 * 16 15 13 39 39 H 1.08996 * 109.47280 * 59.99608 * 16 15 13 40 40 H 1.09001 * 109.46982 * 299.99693 * 17 16 15 41 41 H 1.08994 * 109.47071 * 59.99981 * 17 16 15 42 42 H 0.97009 * 120.00102 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.03332 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9691 0.9117 5 7 2.2273 -0.5910 -1.4907 6 6 1.8740 -1.8943 -1.8477 7 6 2.5732 -2.9738 -1.3224 8 6 2.2180 -4.2612 -1.6734 9 6 1.1746 -4.4762 -2.5554 10 6 0.4804 -3.4040 -3.0845 11 6 -0.6562 -3.6432 -4.0448 12 7 -0.1398 -3.6702 -5.4156 13 6 -0.9815 -3.8711 -6.4488 14 8 -2.1693 -4.0303 -6.2433 15 7 -0.5065 -3.8965 -7.7098 16 6 -1.4214 -4.1142 -8.8330 17 6 -0.6325 -4.0982 -10.1439 18 6 -1.5736 -4.3229 -11.2993 19 1 -2.6288 -4.4634 -11.1168 20 6 -1.0875 -4.3500 -12.5892 21 7 0.1975 -4.1794 -12.8113 22 14 -2.2539 -4.6291 -14.0213 23 1 -3.6377 -4.7927 -13.5080 24 1 -2.2003 -3.4622 -14.9381 25 1 -1.8510 -5.8550 -14.7562 26 6 0.8267 -2.1138 -2.7331 27 1 -0.3633 0.5773 -0.8502 28 1 -0.3633 -1.0249 -0.0748 29 1 -0.3633 0.4476 0.9250 30 1 2.7146 -0.0320 -2.1161 31 1 3.3908 -2.8064 -0.6367 32 1 2.7585 -5.1009 -1.2621 33 1 0.9013 -5.4841 -2.8311 34 1 -1.1301 -4.5977 -3.8162 35 1 -1.3884 -2.8415 -3.9481 36 1 0.8078 -3.5436 -5.5794 37 1 0.4413 -3.7706 -7.8737 38 1 -1.9147 -5.0794 -8.7180 39 1 -2.1709 -3.3230 -8.8499 40 1 -0.1389 -3.1332 -10.2592 41 1 0.1166 -4.8898 -10.1268 42 1 0.5395 -4.1981 -13.7189 43 1 0.2836 -1.2767 -3.1464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343665416.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:00 Heat of formation + Delta-G solvation = -81.013713 kcal Electronic energy + Delta-G solvation = -26018.701178 eV Core-core repulsion = 21997.886672 eV Total energy + Delta-G solvation = -4020.814506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29238 -39.40314 -37.60176 -36.50111 -36.07628 -34.95653 -34.31661 -32.86542 -31.63098 -30.02145 -29.76313 -29.33435 -26.38105 -24.44943 -22.99882 -21.97159 -21.06867 -20.59529 -19.99549 -18.47411 -18.28509 -17.56468 -16.86278 -16.69135 -16.41832 -15.99104 -15.90648 -15.66795 -15.13434 -14.55282 -14.40805 -14.10461 -13.90833 -13.75143 -13.70898 -13.55936 -13.30364 -13.11899 -12.64534 -12.61672 -12.56510 -12.50763 -12.29570 -11.90775 -11.84250 -11.52538 -11.19412 -11.06010 -10.62873 -10.48995 -10.34343 -10.04732 -9.61302 -9.36989 -9.27146 -9.15482 -9.09122 -8.50563 -8.27653 -6.10601 -4.13158 -0.34715 0.73051 0.82099 2.08613 2.90526 3.22846 3.27550 3.34874 3.37725 3.41937 3.54641 3.67666 4.20258 4.26869 4.38976 4.41508 4.44733 4.59961 4.69528 4.76483 4.85809 4.98490 5.15105 5.26683 5.32356 5.40705 5.56105 5.61970 5.90941 5.96516 6.11604 6.26555 6.27550 6.37928 6.50040 6.60231 6.75830 6.97064 7.19481 7.55363 7.61759 7.88711 8.24135 8.39728 8.91010 8.96313 9.51746 11.01059 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022064 B = 0.001687 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.742807 B =16589.535797 C =16898.001633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.670 4.670 2 S 2.609 3.391 3 O -0.956 6.956 4 O -0.949 6.949 5 N -1.064 6.064 6 C 0.114 3.886 7 C -0.095 4.095 8 C -0.113 4.113 9 C -0.088 4.088 10 C -0.099 4.099 11 C 0.181 3.819 12 N -0.751 5.751 13 C 0.698 3.302 14 O -0.598 6.598 15 N -0.738 5.738 16 C 0.140 3.860 17 C 0.012 3.988 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.098 4.098 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.425 0.575 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.395 0.605 37 H 0.393 0.607 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.261 0.739 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 5.531 28.234 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.703 3.297 3 O -0.946 6.946 4 O -0.939 6.939 5 N -0.819 5.819 6 C 0.019 3.981 7 C -0.116 4.116 8 C -0.132 4.132 9 C -0.107 4.107 10 C -0.100 4.100 11 C 0.057 3.943 12 N -0.408 5.408 13 C 0.398 3.602 14 O -0.477 6.477 15 N -0.391 5.391 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.120 4.120 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.264 0.736 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.226 0.774 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.326 5.605 29.067 30.078 hybrid contribution -0.026 0.144 -1.639 1.645 sum 5.300 5.749 27.429 28.521 Atomic orbital electron populations 1.30477 1.27539 1.12093 1.11895 1.05050 0.77821 0.73808 0.73050 1.93640 1.78172 1.37417 1.85372 1.93627 1.77068 1.61621 1.61610 1.53191 1.71490 1.20014 1.37249 1.17224 0.96697 0.83608 1.00538 1.21639 0.98786 0.92057 0.99130 1.21153 0.97425 0.96768 0.97804 1.21312 0.94633 0.99222 0.95525 1.19863 0.98206 0.92873 0.99050 1.19951 0.92711 1.02929 0.78737 1.45153 1.10695 1.79966 1.04987 1.16057 0.85105 0.78187 0.80824 1.90895 1.14522 1.57876 1.84421 1.45544 1.12093 1.76631 1.04859 1.21599 0.92040 1.00123 0.84514 1.19333 0.95881 0.97819 0.89482 1.21090 0.94386 1.49564 0.90825 0.92150 1.25002 0.95202 0.95088 0.99091 1.69968 1.12459 1.49964 1.20944 0.86452 0.81161 0.77771 0.82148 1.19567 1.20959 1.20957 1.21407 0.96329 0.97245 0.97020 0.84958 0.85047 0.85042 0.73627 0.84592 0.84984 0.85080 0.90621 0.90847 0.77098 0.77361 0.92753 0.92772 0.95980 0.95959 0.92916 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.28 10.80 101.05 1.09 -1.18 16 2 S 2.61 16.11 6.07 -107.50 -0.65 15.45 16 3 O -0.96 -9.04 18.08 -57.54 -1.04 -10.08 16 4 O -0.95 -8.93 16.98 -57.54 -0.98 -9.91 16 5 N -1.06 -5.69 5.60 32.41 0.18 -5.51 16 6 C 0.11 0.74 5.69 -83.79 -0.48 0.26 16 7 C -0.10 -0.66 9.25 -39.38 -0.36 -1.03 16 8 C -0.11 -0.70 10.04 -39.61 -0.40 -1.10 16 9 C -0.09 -0.58 9.70 -39.55 -0.38 -0.96 16 10 C -0.10 -0.72 5.25 -104.65 -0.55 -1.26 16 11 C 0.18 1.72 5.80 -5.19 -0.03 1.69 16 12 N -0.75 -8.58 5.55 -66.41 -0.37 -8.95 16 13 C 0.70 11.57 8.57 -86.93 -0.74 10.83 16 14 O -0.60 -12.34 16.34 5.29 0.09 -12.25 16 15 N -0.74 -12.58 5.56 -65.22 -0.36 -12.94 16 16 C 0.14 2.95 5.61 -4.04 -0.02 2.93 16 17 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 18 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 22 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.10 -0.64 9.62 -39.38 -0.38 -1.02 16 27 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.43 1.67 8.92 -34.47 -0.31 1.36 16 31 H 0.14 0.94 7.83 -52.49 -0.41 0.53 16 32 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.40 3.62 8.48 -40.82 -0.35 3.28 16 37 H 0.39 5.73 8.49 -40.82 -0.35 5.39 16 38 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 385.38 15.07 5.81 5.81 Total: -1.00 -37.59 385.38 -10.44 -48.02 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -6.02 Total: 3.11 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.81 Total: -3.79 kcal Atomic # 7 Polarization: -52.76 SS G_CDS: 0.19 Total: -52.58 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.93 Total: -32.24 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 16.11 SS G_CDS: -0.65 Total: 15.45 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.59 -10.44 -48.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343665416.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.989 kcal (2) G-P(sol) polarization free energy of solvation -37.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds