Wall clock time and date at job start Sat Apr 11 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 119.99651 * 2 1 4 4 O 1.21510 * 120.00268 * 0.02562 * 3 2 1 5 5 C 1.48185 * 119.99798 * 180.02562 * 3 2 1 6 6 C 1.39105 * 119.69612 * 179.97438 * 5 3 2 7 7 C 1.39255 * 118.97817 * 179.70226 * 6 5 3 8 8 O 1.35740 * 120.80925 * 180.25569 * 7 6 5 9 9 C 1.35882 * 118.00399 * 66.67145 * 8 7 6 10 10 C 1.38893 * 120.01326 * 5.48544 * 9 8 7 11 11 C 1.38204 * 120.10554 * 179.77028 * 10 9 8 12 12 C 1.38120 * 120.13968 * 0.50693 * 11 10 9 13 13 C 1.39062 * 120.03082 * 359.74452 * 12 11 10 14 14 N 1.39512 * 120.05527 * 180.02562 * 13 12 11 15 15 C 1.34785 * 120.00008 * 215.26157 * 14 13 12 16 16 O 1.21737 * 119.99984 * 355.93746 * 15 14 13 17 17 C 1.46164 * 119.99996 * 175.94103 * 15 14 13 18 18 H 1.07998 * 119.99717 * 0.02562 * 17 15 14 19 19 C 1.40115 * 119.99893 * 179.97438 * 17 15 14 20 20 N 1.30644 * 120.00227 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00168 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46847 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47221 * 120.00208 * 21 19 17 24 24 H 1.48494 * 109.47530 * 240.00358 * 21 19 17 25 25 C 1.38544 * 120.01879 * 185.75998 * 9 8 7 26 26 C 1.39233 * 118.37070 * 0.27508 * 7 6 5 27 27 C 1.38311 * 119.28336 * 0.02562 * 26 7 6 28 28 N 1.31607 * 120.97370 * 0.02562 * 27 26 7 29 29 H 1.09003 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47160 * 299.99557 * 1 2 3 31 31 H 1.08996 * 109.47496 * 59.99946 * 1 2 3 32 32 H 0.96996 * 120.00887 * 180.02562 * 2 1 3 33 33 H 1.08003 * 120.50795 * 359.97403 * 6 5 3 34 34 H 1.08002 * 119.94749 * 0.02562 * 10 9 8 35 35 H 1.08003 * 119.93335 * 180.23485 * 11 10 9 36 36 H 1.08008 * 119.98621 * 179.76915 * 12 11 10 37 37 H 0.97006 * 120.00141 * 35.25822 * 14 13 12 38 38 H 0.96994 * 119.99728 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.06575 * 359.95694 * 25 9 8 40 40 H 1.07997 * 120.35653 * 179.97438 * 26 7 6 41 41 H 1.08007 * 119.50912 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5312 2.2196 0.0005 5 6 3.6207 1.1673 -0.0006 6 6 4.3097 2.3757 -0.0011 7 6 5.7022 2.3583 0.0047 8 8 6.4119 3.5154 0.0096 9 6 6.3359 4.3058 1.1122 10 6 5.6423 3.8692 2.2336 11 6 5.5678 4.6695 3.3578 12 6 6.1738 5.9107 3.3669 13 6 6.8653 6.3558 2.2455 14 7 7.4780 7.6091 2.2543 15 6 7.5138 8.3497 1.1287 16 8 7.0778 7.8952 0.0870 17 6 8.0762 9.6985 1.1589 18 1 8.4634 10.1014 2.0830 19 6 8.1139 10.4681 -0.0113 20 7 7.6459 9.9804 -1.1293 21 14 8.8320 12.1922 0.0273 22 1 9.2901 12.5068 1.4044 23 1 9.9837 12.2698 -0.9069 24 1 7.7936 13.1704 -0.3849 25 6 6.9454 5.5499 1.1165 26 6 6.3484 1.1250 0.0049 27 6 5.5939 -0.0341 -0.0011 28 7 4.2787 0.0138 -0.0075 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.9501 -0.8399 -0.0004 33 1 3.7730 3.3129 -0.0015 34 1 5.1639 2.9009 2.2284 35 1 5.0309 4.3257 4.2295 36 1 6.1108 6.5357 4.2455 37 1 7.8783 7.9476 3.0705 38 1 7.6717 10.5134 -1.9393 39 1 7.4820 5.8926 0.2441 40 1 7.4272 1.0741 0.0089 41 1 6.0914 -0.9928 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344259137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:03 Heat of formation + Delta-G solvation = -29.590743 kcal Electronic energy + Delta-G solvation = -27919.718173 eV Core-core repulsion = 23765.689583 eV Total energy + Delta-G solvation = -4154.028590 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34605 -40.05930 -39.08351 -38.30080 -36.55406 -34.93358 -33.41103 -32.48811 -32.11304 -31.80688 -29.76218 -28.90365 -27.52955 -26.28202 -24.44872 -23.99481 -22.54420 -22.12226 -20.91294 -20.04102 -18.81492 -17.83930 -17.47692 -17.19254 -16.39892 -16.01331 -15.85425 -15.62970 -15.60181 -15.51391 -15.03547 -14.75167 -14.20541 -14.17254 -14.00330 -13.85337 -13.51159 -13.11471 -12.94260 -12.74535 -12.58914 -12.47464 -12.21765 -11.56300 -11.38260 -11.29778 -11.09953 -11.02771 -10.66851 -10.62230 -10.33699 -10.04102 -9.70360 -9.61520 -9.37991 -9.34180 -8.93121 -8.09643 -7.72814 -7.26304 -6.37705 -4.85776 0.31028 0.72907 1.78673 1.87147 2.41475 2.77758 3.04660 3.11332 3.13563 3.17572 3.59291 3.81167 3.96210 4.11306 4.43545 4.46178 4.52639 4.63213 4.70376 4.87688 5.04034 5.14506 5.19889 5.23882 5.38455 5.41480 5.48508 5.58136 5.63654 5.78528 5.85164 6.00738 6.05835 6.14690 6.40227 6.66731 6.77020 6.93866 7.02766 7.07641 7.26020 7.42334 7.66141 7.68793 7.89849 7.97911 8.10852 8.81821 9.14939 10.33637 10.52898 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002304 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.903522 B =12151.643201 C =12398.732394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.717 5.717 3 C 0.572 3.428 4 O -0.524 6.524 5 C 0.089 3.911 6 C -0.132 4.132 7 C 0.147 3.853 8 O -0.251 6.251 9 C 0.128 3.872 10 C -0.236 4.236 11 C -0.064 4.064 12 C -0.196 4.196 13 C 0.226 3.774 14 N -0.697 5.697 15 C 0.540 3.460 16 O -0.556 6.556 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.085 3.915 20 N -0.757 5.757 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.147 4.147 26 C -0.158 4.158 27 C 0.115 3.885 28 N -0.468 5.468 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.412 0.588 33 H 0.157 0.843 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.396 0.604 38 H 0.272 0.728 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 -20.863 5.410 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.369 5.369 3 C 0.356 3.644 4 O -0.398 6.398 5 C -0.048 4.048 6 C -0.153 4.153 7 C 0.095 3.905 8 O -0.162 6.162 9 C 0.085 3.915 10 C -0.256 4.256 11 C -0.083 4.083 12 C -0.218 4.218 13 C 0.126 3.874 14 N -0.340 5.340 15 C 0.347 3.653 16 O -0.437 6.437 17 C -0.572 4.572 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.385 5.385 21 Si 0.738 3.262 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.169 4.169 26 C -0.178 4.178 27 C -0.044 4.044 28 N -0.181 5.181 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.248 0.752 33 H 0.175 0.825 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.012 -20.964 4.239 22.508 hybrid contribution 1.115 1.342 0.428 1.796 sum -5.896 -19.622 4.667 21.014 Atomic orbital electron populations 1.21609 0.79037 1.02472 1.02654 1.45580 1.07742 1.08930 1.74676 1.17849 0.85679 0.84129 0.76733 1.90840 1.68718 1.31245 1.49030 1.20864 0.94117 0.88900 1.00921 1.22575 0.93938 1.00761 0.98021 1.18956 0.89642 0.86189 0.95688 1.84320 1.64771 1.29214 1.37883 1.18831 0.98016 0.90440 0.84182 1.20943 1.07879 1.02002 0.94777 1.20512 0.97574 0.93384 0.96854 1.20919 1.03033 0.98247 0.99598 1.17596 0.91283 0.85714 0.92812 1.44200 1.59030 1.15055 1.15752 1.18461 0.79804 0.85971 0.81056 1.90645 1.50657 1.72657 1.29774 1.20866 1.42030 0.97778 0.96562 0.90843 1.25760 0.93530 0.99605 0.94715 1.69994 1.32590 1.36170 0.99732 0.86213 0.79075 0.81689 0.79250 1.18615 1.19971 1.19970 1.20662 1.04936 0.89751 1.01542 1.22483 1.03036 0.91455 1.00833 1.22649 0.88473 0.98217 0.95052 1.67502 1.10704 1.28197 1.11728 0.90359 0.91917 0.91935 0.75202 0.82518 0.86777 0.86139 0.85990 0.76971 0.91693 0.82819 0.83046 0.81112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.85 0.64 1.25 16 2 N -0.72 -6.60 5.70 -67.94 -0.39 -6.98 16 3 C 0.57 7.45 7.81 -12.17 -0.10 7.36 16 4 O -0.52 -8.67 16.32 5.36 0.09 -8.58 16 5 C 0.09 1.14 6.75 -83.04 -0.56 0.58 16 6 C -0.13 -1.90 7.90 -38.88 -0.31 -2.21 16 7 C 0.15 2.10 4.81 -38.83 -0.19 1.91 16 8 O -0.25 -4.44 10.03 -3.07 -0.03 -4.47 16 9 C 0.13 2.40 6.55 -39.23 -0.26 2.14 16 10 C -0.24 -3.86 8.80 -39.35 -0.35 -4.20 16 11 C -0.06 -0.99 10.03 -39.64 -0.40 -1.39 16 12 C -0.20 -3.34 9.97 -39.32 -0.39 -3.73 16 13 C 0.23 4.68 6.29 -83.80 -0.53 4.15 16 14 N -0.70 -15.36 5.31 -11.22 -0.06 -15.42 16 15 C 0.54 14.80 7.57 -13.08 -0.10 14.70 16 16 O -0.56 -17.25 12.47 5.16 0.06 -17.18 16 17 C -0.54 -14.45 9.53 -35.70 -0.34 -14.79 16 18 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 19 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 20 N -0.76 -21.93 11.82 55.55 0.66 -21.27 16 21 Si 0.91 19.38 29.56 -169.99 -5.02 14.35 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 24 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 25 C -0.15 -3.21 8.62 -39.21 -0.34 -3.55 16 26 C -0.16 -1.66 10.08 -39.18 -0.39 -2.06 16 27 C 0.12 1.01 11.17 -17.62 -0.20 0.81 16 28 N -0.47 -4.89 9.54 -9.87 -0.09 -4.99 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.41 2.96 8.16 -40.82 -0.33 2.62 16 33 H 0.16 2.54 7.64 -52.48 -0.40 2.14 16 34 H 0.11 1.68 6.13 -52.49 -0.32 1.36 16 35 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 36 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.40 7.33 8.80 -40.82 -0.36 6.98 16 38 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 39 H 0.15 3.87 6.25 -52.49 -0.33 3.54 16 40 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -35.60 363.93 -7.44 -43.05 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -4.25 Total: 12.86 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -3.89 Total: 3.15 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.12 Total: -48.67 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: 0.12 Total: -30.23 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.60 -7.44 -43.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344259137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.457 kcal (2) G-P(sol) polarization free energy of solvation -35.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds