Wall clock time and date at job start Sat Apr 11 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 119.99651 * 2 1 4 4 O 1.21510 * 120.00268 * 0.02562 * 3 2 1 5 5 C 1.48185 * 119.99798 * 180.02562 * 3 2 1 6 6 C 1.39105 * 119.69612 * 179.97438 * 5 3 2 7 7 C 1.39255 * 118.97817 * 179.70226 * 6 5 3 8 8 O 1.35740 * 120.80925 * 180.25569 * 7 6 5 9 9 C 1.35882 * 118.00399 * 66.67145 * 8 7 6 10 10 C 1.38893 * 120.01326 * 5.48544 * 9 8 7 11 11 C 1.38204 * 120.10554 * 179.77028 * 10 9 8 12 12 C 1.38120 * 120.13968 * 0.50693 * 11 10 9 13 13 C 1.39062 * 120.03082 * 359.74452 * 12 11 10 14 14 N 1.39512 * 120.05527 * 180.02562 * 13 12 11 15 15 C 1.34785 * 120.00008 * 215.26157 * 14 13 12 16 16 O 1.21737 * 119.99984 * 355.93746 * 15 14 13 17 17 C 1.46164 * 119.99996 * 175.94103 * 15 14 13 18 18 H 1.07998 * 119.99717 * 0.02562 * 17 15 14 19 19 C 1.40115 * 119.99893 * 179.97438 * 17 15 14 20 20 N 1.30644 * 120.00227 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00168 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46847 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47221 * 120.00208 * 21 19 17 24 24 H 1.48494 * 109.47530 * 240.00358 * 21 19 17 25 25 C 1.38544 * 120.01879 * 185.75998 * 9 8 7 26 26 C 1.39233 * 118.37070 * 0.27508 * 7 6 5 27 27 C 1.38311 * 119.28336 * 0.02562 * 26 7 6 28 28 N 1.31607 * 120.97370 * 0.02562 * 27 26 7 29 29 H 1.09003 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47160 * 299.99557 * 1 2 3 31 31 H 1.08996 * 109.47496 * 59.99946 * 1 2 3 32 32 H 0.96996 * 120.00887 * 180.02562 * 2 1 3 33 33 H 1.08003 * 120.50795 * 359.97403 * 6 5 3 34 34 H 1.08002 * 119.94749 * 0.02562 * 10 9 8 35 35 H 1.08003 * 119.93335 * 180.23485 * 11 10 9 36 36 H 1.08008 * 119.98621 * 179.76915 * 12 11 10 37 37 H 0.97006 * 120.00141 * 35.25822 * 14 13 12 38 38 H 0.96994 * 119.99728 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.06575 * 359.95694 * 25 9 8 40 40 H 1.07997 * 120.35653 * 179.97438 * 26 7 6 41 41 H 1.08007 * 119.50912 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5312 2.2196 0.0005 5 6 3.6207 1.1673 -0.0006 6 6 4.3097 2.3757 -0.0011 7 6 5.7022 2.3583 0.0047 8 8 6.4119 3.5154 0.0096 9 6 6.3359 4.3058 1.1122 10 6 5.6423 3.8692 2.2336 11 6 5.5678 4.6695 3.3578 12 6 6.1738 5.9107 3.3669 13 6 6.8653 6.3558 2.2455 14 7 7.4780 7.6091 2.2543 15 6 7.5138 8.3497 1.1287 16 8 7.0778 7.8952 0.0870 17 6 8.0762 9.6985 1.1589 18 1 8.4634 10.1014 2.0830 19 6 8.1139 10.4681 -0.0113 20 7 7.6459 9.9804 -1.1293 21 14 8.8320 12.1922 0.0273 22 1 9.2901 12.5068 1.4044 23 1 9.9837 12.2698 -0.9069 24 1 7.7936 13.1704 -0.3849 25 6 6.9454 5.5499 1.1165 26 6 6.3484 1.1250 0.0049 27 6 5.5939 -0.0341 -0.0011 28 7 4.2787 0.0138 -0.0075 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.9501 -0.8399 -0.0004 33 1 3.7730 3.3129 -0.0015 34 1 5.1639 2.9009 2.2284 35 1 5.0309 4.3257 4.2295 36 1 6.1108 6.5357 4.2455 37 1 7.8783 7.9476 3.0705 38 1 7.6717 10.5134 -1.9393 39 1 7.4820 5.8926 0.2441 40 1 7.4272 1.0741 0.0089 41 1 6.0914 -0.9928 -0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344259137.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:03 Heat of formation + Delta-G solvation = -57.239543 kcal Electronic energy + Delta-G solvation = -27920.917114 eV Core-core repulsion = 23765.689583 eV Total energy + Delta-G solvation = -4155.227532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45831 -41.25629 -40.44979 -39.61932 -38.22499 -35.82324 -35.23849 -34.52523 -33.16004 -32.76613 -31.18328 -30.50256 -28.32402 -28.21613 -25.46993 -24.95659 -24.12664 -23.35764 -22.21912 -21.47441 -20.15065 -19.50438 -18.63389 -18.45073 -17.69568 -17.38831 -17.03452 -17.01166 -16.83212 -16.70517 -16.46719 -16.02451 -15.62170 -15.32140 -15.12180 -14.92014 -14.80086 -14.55050 -14.46042 -14.27221 -13.84650 -13.48717 -13.23814 -13.11924 -12.89710 -12.82635 -12.76073 -12.61348 -12.45128 -12.00442 -11.63776 -11.11383 -11.00528 -10.87432 -10.73298 -10.55035 -10.18131 -9.95816 -9.44163 -8.90926 -8.39313 -6.97990 -0.65323 -0.27835 0.34407 0.42110 1.38356 1.38699 1.45122 1.57478 1.83096 2.04507 2.19530 2.33095 2.63250 2.75672 2.91321 2.99902 3.49961 3.54785 3.64603 3.74472 3.86438 4.01705 4.14301 4.26169 4.31244 4.39180 4.49110 4.51995 4.59408 4.60189 4.86986 4.88562 4.92591 5.21310 5.23334 5.25351 5.29284 5.38312 5.44221 5.60772 5.75143 6.13134 6.22723 6.24611 6.40727 6.57535 6.75086 7.02024 7.29301 8.31405 8.54210 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017324 B = 0.002304 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.903522 B =12151.643201 C =12398.732394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.698 5.698 3 C 0.564 3.436 4 O -0.571 6.571 5 C 0.088 3.912 6 C -0.151 4.151 7 C 0.116 3.884 8 O -0.273 6.273 9 C 0.125 3.875 10 C -0.224 4.224 11 C -0.051 4.051 12 C -0.186 4.186 13 C 0.196 3.804 14 N -0.689 5.689 15 C 0.526 3.474 16 O -0.606 6.606 17 C -0.561 4.561 18 H 0.097 0.903 19 C 0.026 3.974 20 N -0.815 5.815 21 Si 1.004 2.996 22 H -0.242 1.242 23 H -0.268 1.268 24 H -0.269 1.269 25 C -0.183 4.183 26 C -0.143 4.143 27 C 0.135 3.865 28 N -0.456 5.456 29 H 0.120 0.880 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.425 0.575 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.412 0.588 38 H 0.277 0.723 39 H 0.104 0.896 40 H 0.176 0.824 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 -23.383 7.896 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.349 5.349 3 C 0.349 3.651 4 O -0.450 6.450 5 C -0.049 4.049 6 C -0.173 4.173 7 C 0.065 3.935 8 O -0.185 6.185 9 C 0.082 3.918 10 C -0.244 4.244 11 C -0.070 4.070 12 C -0.207 4.207 13 C 0.098 3.902 14 N -0.334 5.334 15 C 0.333 3.667 16 O -0.492 6.492 17 C -0.597 4.597 18 H 0.115 0.885 19 C -0.190 4.190 20 N -0.444 5.444 21 Si 0.823 3.177 22 H -0.165 1.165 23 H -0.193 1.193 24 H -0.194 1.194 25 C -0.205 4.205 26 C -0.163 4.163 27 C -0.024 4.024 28 N -0.169 5.169 29 H 0.138 0.862 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.263 0.737 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.186 0.814 36 H 0.172 0.828 37 H 0.249 0.751 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.193 0.807 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.991 -23.574 6.785 25.508 hybrid contribution 1.046 1.810 -0.341 2.118 sum -5.945 -21.764 6.443 23.464 Atomic orbital electron populations 1.21832 0.77568 1.04960 1.01900 1.45563 1.08715 1.08222 1.72436 1.18026 0.85948 0.84505 0.76610 1.90815 1.69558 1.33014 1.51615 1.20784 0.94142 0.88862 1.01119 1.22359 0.94164 1.00440 1.00295 1.19316 0.89642 0.86252 0.98243 1.84291 1.65457 1.30731 1.38039 1.18853 0.97715 0.89751 0.85467 1.21224 1.06335 1.02871 0.93955 1.21063 0.96061 0.92106 0.97730 1.21220 1.01435 0.99116 0.98890 1.17875 0.93025 0.85183 0.94117 1.43699 1.59310 1.15447 1.14946 1.18849 0.79417 0.86850 0.81609 1.90615 1.52679 1.73842 1.32035 1.21432 1.42310 0.98006 0.97944 0.88475 1.27080 0.93256 1.04863 0.93787 1.70174 1.34566 1.38686 1.00951 0.84876 0.78057 0.74576 0.80232 1.16489 1.19323 1.19427 1.20402 1.07208 0.92075 1.00848 1.22839 1.04440 0.90197 0.98865 1.23520 0.87574 0.99471 0.91858 1.67626 1.11605 1.26508 1.11144 0.86201 0.92580 0.92843 0.73734 0.85653 0.84692 0.81421 0.82816 0.75093 0.91272 0.87802 0.80681 0.75808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.70 127.77 1.37 2.38 16 2 N -0.70 -11.69 5.70 -487.14 -2.78 -14.47 16 3 C 0.56 14.67 7.81 86.89 0.68 15.34 16 4 O -0.57 -19.78 16.32 -3.75 -0.06 -19.84 16 5 C 0.09 2.18 6.75 41.85 0.28 2.46 16 6 C -0.15 -4.54 7.90 22.72 0.18 -4.36 16 7 C 0.12 3.36 4.81 22.75 0.11 3.47 16 8 O -0.27 -10.36 10.03 -33.89 -0.34 -10.70 16 9 C 0.12 4.96 6.55 22.50 0.15 5.11 16 10 C -0.22 -7.19 8.80 22.42 0.20 -6.99 16 11 C -0.05 -1.46 10.03 22.23 0.22 -1.23 16 12 C -0.19 -6.08 9.97 22.44 0.22 -5.85 16 13 C 0.20 8.48 6.29 38.28 0.24 8.72 16 14 N -0.69 -31.77 5.31 -307.59 -1.63 -33.40 16 15 C 0.53 30.59 7.57 86.30 0.65 31.24 16 16 O -0.61 -40.85 12.47 -4.47 -0.06 -40.91 16 17 C -0.56 -31.20 9.53 24.79 0.24 -30.96 16 18 H 0.10 4.73 7.85 -2.91 -0.02 4.71 16 19 C 0.03 1.44 5.50 85.33 0.47 1.91 16 20 N -0.81 -49.82 11.82 21.85 0.26 -49.56 16 21 Si 1.00 40.25 29.56 68.60 2.03 42.28 16 22 H -0.24 -8.82 7.11 99.48 0.71 -8.12 16 23 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 25 C -0.18 -8.71 8.62 22.51 0.19 -8.51 16 26 C -0.14 -2.69 10.08 22.53 0.23 -2.46 16 27 C 0.14 1.80 11.17 84.74 0.95 2.74 16 28 N -0.46 -8.18 9.54 -185.13 -1.77 -9.95 16 29 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.42 4.89 8.16 -92.71 -0.76 4.13 16 33 H 0.13 4.51 7.64 -2.91 -0.02 4.49 16 34 H 0.14 3.77 6.13 -2.91 -0.02 3.75 16 35 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.41 15.55 8.80 -92.70 -0.82 14.73 16 38 H 0.28 15.33 8.29 -92.71 -0.77 14.56 16 39 H 0.10 5.93 6.25 -2.91 -0.02 5.91 16 40 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.23 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -88.10 363.93 1.57 -86.53 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.45 Total: 37.02 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 6.38 Total: 13.02 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -5.92 Total: -107.39 kcal Atomic # 8 Polarization: -71.00 SS G_CDS: -0.46 Total: -71.45 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -88.10 1.57 -86.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344259137.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.290 kcal (2) G-P(sol) polarization free energy of solvation -88.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds