Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36057 * 117.00226 * 2 1 4 4 C 1.38598 * 119.99355 * 359.97438 * 3 2 1 5 5 C 1.38325 * 120.04102 * 179.97438 * 4 3 2 6 6 F 1.35106 * 119.98118 * 180.02562 * 5 4 3 7 7 C 1.39007 * 120.03844 * 359.97438 * 5 4 3 8 8 N 1.40265 * 120.00445 * 179.97438 * 7 5 4 9 9 C 1.34769 * 120.00109 * 204.80757 * 8 7 5 10 10 O 1.21599 * 120.00169 * 5.63815 * 9 8 7 11 11 N 1.34780 * 120.00348 * 185.63684 * 9 8 7 12 12 C 1.46503 * 120.00334 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47013 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99855 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99564 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99753 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00235 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00071 * 179.97438 * 16 15 13 19 19 N 1.31415 * 120.00258 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00215 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47277 * 89.99787 * 20 18 16 22 22 H 1.48493 * 109.47542 * 210.00111 * 20 18 16 23 23 H 1.48505 * 109.46892 * 329.99952 * 20 18 16 24 24 C 1.38751 * 119.99161 * 0.02562 * 7 5 4 25 25 C 1.38525 * 119.95592 * 359.97438 * 24 7 5 26 26 O 1.36041 * 120.01883 * 180.02562 * 25 24 7 27 27 C 1.42899 * 117.00002 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47219 * 300.00400 * 1 2 3 30 30 H 1.09003 * 109.46887 * 60.00415 * 1 2 3 31 31 H 1.07995 * 119.98156 * 0.25994 * 4 3 2 32 32 H 0.97004 * 120.00225 * 24.81043 * 8 7 5 33 33 H 0.97006 * 119.99725 * 0.02562 * 11 9 8 34 34 H 1.09005 * 109.46624 * 300.00035 * 12 11 9 35 35 H 1.08996 * 109.46851 * 59.99980 * 12 11 9 36 36 H 0.97000 * 120.00271 * 359.97438 * 15 13 12 37 37 H 0.96994 * 120.00455 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.02155 * 180.02562 * 24 7 5 39 39 H 1.09002 * 109.47215 * 59.99676 * 27 26 25 40 40 H 1.08998 * 109.47384 * 180.02562 * 27 26 25 41 41 H 1.09004 * 109.46655 * 299.99991 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2122 0.0000 4 6 1.2918 2.3746 -0.0005 5 6 1.9189 3.6076 0.0000 6 9 1.1817 4.7398 0.0000 7 6 3.3069 3.6823 0.0016 8 7 3.9420 4.9330 0.0016 9 6 5.1923 5.0539 -0.4867 10 8 5.7312 4.1033 -1.0201 11 7 5.8454 6.2284 -0.3837 12 6 7.2043 6.3599 -0.9150 13 6 7.7045 7.7609 -0.6738 14 8 6.9954 8.5700 -0.1137 15 7 8.9398 8.1147 -1.0805 16 6 9.3947 9.3893 -0.8616 17 1 8.7633 10.1098 -0.3628 18 6 10.6683 9.7540 -1.2803 19 7 11.1046 10.9756 -1.0700 20 14 11.7607 8.5077 -2.1423 21 1 11.5292 8.5764 -3.6076 22 1 13.1846 8.8124 -1.8513 23 1 11.4365 7.1435 -1.6534 24 6 4.0641 2.5197 0.0022 25 6 3.4359 1.2850 0.0016 26 8 4.1771 0.1443 0.0027 27 6 5.5982 0.2939 0.0049 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2134 2.3176 0.0033 32 1 3.4813 5.7109 0.3531 33 1 5.4156 6.9866 0.0422 34 1 7.8608 5.6487 -0.4136 35 1 7.1972 6.1555 -1.9856 36 1 9.5070 7.4675 -1.5281 37 1 11.9938 11.2301 -1.3620 38 1 5.1426 2.5772 0.0038 39 1 5.9044 0.8430 0.8954 40 1 6.0672 -0.6900 0.0051 41 1 5.9070 0.8431 -0.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349375786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = -137.515320 kcal Electronic energy + Delta-G solvation = -28896.102543 eV Core-core repulsion = 24306.624768 eV Total energy + Delta-G solvation = -4589.477775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.10466 -41.11368 -40.17436 -38.72755 -38.55797 -37.10754 -34.68029 -34.46173 -33.87752 -31.86519 -30.34053 -29.91171 -28.04188 -27.47162 -26.91540 -24.46059 -23.02740 -22.53770 -20.99194 -19.76724 -19.21721 -18.99374 -18.46049 -18.07434 -17.25667 -16.91597 -16.50503 -16.10039 -15.83813 -15.57257 -15.54972 -15.47060 -15.19050 -14.86442 -14.82151 -14.74338 -14.29255 -14.16205 -13.54743 -13.21606 -12.97836 -12.85102 -12.58601 -12.42143 -12.29340 -12.23600 -11.95331 -11.69890 -11.59609 -11.37176 -11.27979 -10.69145 -10.27463 -10.11398 -10.05104 -9.75835 -9.12771 -8.85572 -8.77489 -8.36501 -7.75103 -6.45855 -3.98933 0.83727 0.91391 2.33662 2.87659 2.94037 2.95281 2.99988 3.00788 3.08802 3.36542 3.49360 3.92166 3.95987 3.99455 4.33985 4.47182 4.66838 4.78696 4.82262 4.83852 4.98476 5.08510 5.08567 5.13916 5.20495 5.39652 5.41402 5.54170 5.64018 5.67179 5.71725 5.83899 6.02124 6.39149 6.47913 6.67359 6.74664 7.23986 7.38605 7.81286 7.94718 8.33430 8.40887 8.75968 9.23633 9.56150 10.66101 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.002166 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.902030 B =12926.386580 C =14064.138214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.301 6.301 3 C 0.102 3.898 4 C -0.185 4.185 5 C 0.063 3.937 6 F -0.135 7.135 7 C 0.156 3.844 8 N -0.679 5.679 9 C 0.708 3.292 10 O -0.580 6.580 11 N -0.715 5.715 12 C 0.124 3.876 13 C 0.436 3.564 14 O -0.579 6.579 15 N -0.574 5.574 16 C -0.311 4.311 17 H 0.122 0.878 18 C 0.045 3.955 19 N -0.872 5.872 20 Si 0.880 3.120 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.267 1.267 24 C -0.163 4.163 25 C 0.116 3.884 26 O -0.302 6.302 27 C 0.024 3.976 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.151 0.849 32 H 0.414 0.586 33 H 0.411 0.589 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.375 0.625 37 H 0.276 0.724 38 H 0.175 0.825 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.455 -22.038 1.985 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.055 3.945 4 C -0.205 4.205 5 C 0.040 3.960 6 F -0.114 7.114 7 C 0.059 3.941 8 N -0.326 5.326 9 C 0.408 3.592 10 O -0.458 6.458 11 N -0.372 5.372 12 C -0.004 4.004 13 C 0.222 3.778 14 O -0.463 6.463 15 N -0.211 5.211 16 C -0.440 4.440 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.511 5.511 20 Si 0.706 3.294 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.192 1.192 24 C -0.184 4.184 25 C 0.069 3.931 26 O -0.215 6.215 27 C -0.071 4.071 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.168 0.832 32 H 0.250 0.750 33 H 0.250 0.750 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.208 0.792 37 H 0.087 0.913 38 H 0.192 0.808 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.142 -22.422 1.854 28.285 hybrid contribution 0.407 0.573 -0.361 0.790 sum -16.735 -21.849 1.493 27.562 Atomic orbital electron populations 1.23106 0.78526 1.04139 1.01357 1.86217 1.21019 1.25164 1.89083 1.17824 0.88854 0.84789 1.03026 1.20693 1.00841 0.89665 1.09338 1.16816 0.86699 0.82408 1.10092 1.91484 1.76625 1.48780 1.94506 1.17094 0.88893 0.85513 1.02634 1.42461 1.15641 1.09561 1.64967 1.15734 0.80466 0.83835 0.79138 1.90853 1.67575 1.38265 1.49098 1.44771 1.16646 1.12670 1.63072 1.20891 0.82337 0.96966 1.00187 1.19583 0.83605 0.88881 0.85744 1.90547 1.56459 1.52462 1.46867 1.42103 1.13506 1.12976 1.52543 1.19437 1.00286 0.86821 1.37423 0.86050 1.25078 0.96911 0.96463 0.97452 1.69614 1.19079 1.17303 1.45100 0.86664 0.81201 0.80979 0.80598 1.19352 1.19941 1.19219 1.21325 1.02810 0.88513 1.05800 1.18062 0.87993 0.86117 1.00880 1.86166 1.19216 1.27489 1.88678 1.23150 0.77917 1.03898 1.02170 0.88061 0.92596 0.92577 0.83192 0.75015 0.75029 0.89524 0.89498 0.79204 0.91315 0.80819 0.92535 0.88099 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.12 10.28 -34.57 -0.36 -3.48 16 3 C 0.10 1.13 6.70 -39.13 -0.26 0.87 16 4 C -0.19 -1.81 9.01 -39.42 -0.36 -2.17 16 5 C 0.06 0.70 7.30 -39.26 -0.29 0.41 16 6 F -0.14 -1.50 16.80 2.25 0.04 -1.46 16 7 C 0.16 1.93 6.44 -83.52 -0.54 1.39 16 8 N -0.68 -8.23 5.32 -14.14 -0.08 -8.31 16 9 C 0.71 10.26 8.37 -86.92 -0.73 9.53 16 10 O -0.58 -9.53 13.51 5.28 0.07 -9.46 16 11 N -0.71 -10.61 5.53 -66.41 -0.37 -10.98 16 12 C 0.12 2.00 6.15 -5.19 -0.03 1.97 16 13 C 0.44 9.16 7.85 -10.98 -0.09 9.08 16 14 O -0.58 -14.12 15.24 5.55 0.08 -14.03 16 15 N -0.57 -12.87 5.09 -10.96 -0.06 -12.92 16 16 C -0.31 -8.38 10.16 -14.93 -0.15 -8.53 16 17 H 0.12 3.74 7.39 -52.48 -0.39 3.35 16 18 C 0.05 1.19 5.50 -17.47 -0.10 1.10 16 19 N -0.87 -24.49 13.96 55.50 0.77 -23.72 16 20 Si 0.88 18.53 27.74 -169.99 -4.71 13.81 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 H -0.27 -5.10 6.52 56.52 0.37 -4.73 16 24 C -0.16 -2.06 7.70 -39.29 -0.30 -2.36 16 25 C 0.12 1.42 6.70 -39.15 -0.26 1.16 16 26 O -0.30 -3.61 10.28 -34.52 -0.35 -3.96 16 27 C 0.02 0.21 9.81 101.05 0.99 1.20 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.15 1.06 6.29 -52.49 -0.33 0.73 16 32 H 0.41 4.11 8.47 -40.82 -0.35 3.77 16 33 H 0.41 6.01 7.46 -40.82 -0.30 5.71 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.37 7.36 5.76 -40.82 -0.24 7.13 16 37 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.17 2.31 4.02 -52.49 -0.21 2.10 16 39 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 40 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -33.15 356.89 -4.96 -38.11 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -4.26 Total: 16.23 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -1.12 Total: 14.79 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.28 Total: -55.93 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.55 Total: -30.93 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.46 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -4.71 Total: 13.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.15 -4.96 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349375786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.406 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds