Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36057 * 117.00226 * 2 1 4 4 C 1.38598 * 119.99355 * 359.97438 * 3 2 1 5 5 C 1.38325 * 120.04102 * 179.97438 * 4 3 2 6 6 F 1.35106 * 119.98118 * 180.02562 * 5 4 3 7 7 C 1.39007 * 120.03844 * 359.97438 * 5 4 3 8 8 N 1.40265 * 120.00445 * 179.97438 * 7 5 4 9 9 C 1.34769 * 120.00109 * 204.80757 * 8 7 5 10 10 O 1.21599 * 120.00169 * 5.63815 * 9 8 7 11 11 N 1.34780 * 120.00348 * 185.63684 * 9 8 7 12 12 C 1.46503 * 120.00334 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.47013 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99855 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99564 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99753 * 179.97438 * 15 13 12 17 17 H 1.08003 * 120.00235 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00071 * 179.97438 * 16 15 13 19 19 N 1.31415 * 120.00258 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00215 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47277 * 89.99787 * 20 18 16 22 22 H 1.48493 * 109.47542 * 210.00111 * 20 18 16 23 23 H 1.48505 * 109.46892 * 329.99952 * 20 18 16 24 24 C 1.38751 * 119.99161 * 0.02562 * 7 5 4 25 25 C 1.38525 * 119.95592 * 359.97438 * 24 7 5 26 26 O 1.36041 * 120.01883 * 180.02562 * 25 24 7 27 27 C 1.42899 * 117.00002 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47066 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47219 * 300.00400 * 1 2 3 30 30 H 1.09003 * 109.46887 * 60.00415 * 1 2 3 31 31 H 1.07995 * 119.98156 * 0.25994 * 4 3 2 32 32 H 0.97004 * 120.00225 * 24.81043 * 8 7 5 33 33 H 0.97006 * 119.99725 * 0.02562 * 11 9 8 34 34 H 1.09005 * 109.46624 * 300.00035 * 12 11 9 35 35 H 1.08996 * 109.46851 * 59.99980 * 12 11 9 36 36 H 0.97000 * 120.00271 * 359.97438 * 15 13 12 37 37 H 0.96994 * 120.00455 * 179.97438 * 19 18 16 38 38 H 1.08001 * 120.02155 * 180.02562 * 24 7 5 39 39 H 1.09002 * 109.47215 * 59.99676 * 27 26 25 40 40 H 1.08998 * 109.47384 * 180.02562 * 27 26 25 41 41 H 1.09004 * 109.46655 * 299.99991 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0468 1.2122 0.0000 4 6 1.2918 2.3746 -0.0005 5 6 1.9189 3.6076 0.0000 6 9 1.1817 4.7398 0.0000 7 6 3.3069 3.6823 0.0016 8 7 3.9420 4.9330 0.0016 9 6 5.1923 5.0539 -0.4867 10 8 5.7312 4.1033 -1.0201 11 7 5.8454 6.2284 -0.3837 12 6 7.2043 6.3599 -0.9150 13 6 7.7045 7.7609 -0.6738 14 8 6.9954 8.5700 -0.1137 15 7 8.9398 8.1147 -1.0805 16 6 9.3947 9.3893 -0.8616 17 1 8.7633 10.1098 -0.3628 18 6 10.6683 9.7540 -1.2803 19 7 11.1046 10.9756 -1.0700 20 14 11.7607 8.5077 -2.1423 21 1 11.5292 8.5764 -3.6076 22 1 13.1846 8.8124 -1.8513 23 1 11.4365 7.1435 -1.6534 24 6 4.0641 2.5197 0.0022 25 6 3.4359 1.2850 0.0016 26 8 4.1771 0.1443 0.0027 27 6 5.5982 0.2939 0.0049 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2134 2.3176 0.0033 32 1 3.4813 5.7109 0.3531 33 1 5.4156 6.9866 0.0422 34 1 7.8608 5.6487 -0.4136 35 1 7.1972 6.1555 -1.9856 36 1 9.5070 7.4675 -1.5281 37 1 11.9938 11.2301 -1.3620 38 1 5.1426 2.5772 0.0038 39 1 5.9044 0.8430 0.8954 40 1 6.0672 -0.6900 0.0051 41 1 5.9070 0.8431 -0.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349375786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -163.728616 kcal Electronic energy + Delta-G solvation = -28897.239237 eV Core-core repulsion = 24306.624768 eV Total energy + Delta-G solvation = -4590.614469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.97064 -42.06486 -41.19207 -40.27442 -39.44074 -38.05598 -36.31286 -35.51519 -35.32707 -33.83515 -31.18147 -30.81638 -29.27504 -28.08138 -27.85286 -26.19571 -23.92308 -23.42866 -22.06327 -21.49251 -20.63535 -20.11546 -19.61226 -19.06538 -18.18388 -17.87370 -17.46966 -17.31261 -17.03400 -16.77178 -16.65678 -16.47314 -16.15931 -16.13916 -15.86912 -15.67355 -15.53231 -15.33457 -14.91743 -14.40058 -14.32190 -14.02768 -13.92180 -13.64872 -13.48569 -13.21163 -12.97267 -12.60899 -12.44446 -12.43213 -12.34376 -12.08528 -11.99980 -11.57974 -11.38785 -10.93096 -10.66954 -10.35643 -10.27014 -9.67295 -8.61496 -8.45372 -6.07718 -0.00631 0.02534 1.25275 1.31829 1.34791 1.45002 1.76858 1.84908 2.20899 2.23255 2.27983 2.45927 2.69521 3.04804 3.06971 3.10943 3.55898 3.87912 3.98061 3.99753 4.24238 4.35539 4.36671 4.39148 4.42644 4.44215 4.46002 4.60433 4.72526 4.77110 4.85147 4.94794 5.10552 5.19914 5.47766 5.57423 5.68784 5.88115 5.99991 6.47246 6.48365 6.72189 6.78468 7.21777 7.30209 7.77925 8.70938 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.021685 B = 0.002166 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.902030 B =12926.386580 C =14064.138214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.101 3.899 4 C -0.175 4.175 5 C 0.063 3.937 6 F -0.135 7.135 7 C 0.137 3.863 8 N -0.670 5.670 9 C 0.711 3.289 10 O -0.598 6.598 11 N -0.717 5.717 12 C 0.137 3.863 13 C 0.444 3.556 14 O -0.615 6.615 15 N -0.576 5.576 16 C -0.331 4.331 17 H 0.063 0.937 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.230 1.230 24 C -0.170 4.170 25 C 0.102 3.898 26 O -0.316 6.316 27 C 0.021 3.979 28 H 0.120 0.880 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.180 0.820 32 H 0.423 0.577 33 H 0.412 0.588 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.393 0.607 37 H 0.281 0.719 38 H 0.165 0.835 39 H 0.059 0.941 40 H 0.125 0.875 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 -25.135 1.179 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.054 3.946 4 C -0.194 4.194 5 C 0.040 3.960 6 F -0.113 7.113 7 C 0.040 3.960 8 N -0.318 5.318 9 C 0.411 3.589 10 O -0.478 6.478 11 N -0.374 5.374 12 C 0.009 3.991 13 C 0.232 3.768 14 O -0.501 6.501 15 N -0.216 5.216 16 C -0.460 4.460 17 H 0.081 0.919 18 C -0.209 4.209 19 N -0.566 5.566 20 Si 0.779 3.221 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.153 1.153 24 C -0.191 4.191 25 C 0.056 3.944 26 O -0.230 6.230 27 C -0.074 4.074 28 H 0.138 0.862 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.197 0.803 32 H 0.261 0.739 33 H 0.250 0.750 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.229 0.771 37 H 0.091 0.909 38 H 0.182 0.818 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.932 -25.545 1.062 31.229 hybrid contribution 0.432 1.507 -0.034 1.568 sum -17.501 -24.038 1.028 29.751 Atomic orbital electron populations 1.23453 0.76161 1.05947 1.02607 1.86202 1.23513 1.24821 1.88846 1.17961 0.88725 0.85581 1.02316 1.20943 1.02199 0.88538 1.07762 1.16887 0.86280 0.82913 1.09907 1.91488 1.76492 1.48853 1.94500 1.17237 0.89501 0.85309 1.03921 1.42309 1.14900 1.10084 1.64483 1.15711 0.80955 0.83215 0.79010 1.90847 1.68221 1.38708 1.49994 1.44712 1.16342 1.12969 1.63357 1.20797 0.83190 0.93238 1.01839 1.20505 0.82570 0.90458 0.83290 1.90538 1.57379 1.54384 1.47835 1.41897 1.14407 1.11779 1.53553 1.19016 1.00469 0.88063 1.38455 0.91901 1.26090 0.98176 0.98890 0.97782 1.69781 1.19957 1.20090 1.46745 0.85438 0.77960 0.79309 0.79375 1.18157 1.19988 1.15275 1.21231 1.02447 0.88950 1.06523 1.18270 0.88800 0.86052 1.01322 1.86145 1.20476 1.27664 1.88711 1.23315 0.76761 1.05378 1.01912 0.86178 0.91171 0.91380 0.80293 0.73916 0.74965 0.87200 0.87408 0.77128 0.90943 0.81750 0.92239 0.85649 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.32 -6.03 10.28 -80.19 -0.82 -6.85 16 3 C 0.10 2.09 6.70 22.56 0.15 2.24 16 4 C -0.17 -3.02 9.01 22.38 0.20 -2.82 16 5 C 0.06 1.30 7.30 22.47 0.16 1.46 16 6 F -0.13 -2.74 16.80 44.97 0.76 -1.98 16 7 C 0.14 3.26 6.44 38.10 0.25 3.50 16 8 N -0.67 -15.57 5.32 -316.90 -1.69 -17.25 16 9 C 0.71 19.68 8.37 179.06 1.50 21.18 16 10 O -0.60 -18.82 13.51 -4.03 -0.05 -18.87 16 11 N -0.72 -20.32 5.53 -482.27 -2.67 -22.99 16 12 C 0.14 4.12 6.15 85.63 0.53 4.64 16 13 C 0.44 18.45 7.85 87.66 0.69 19.14 16 14 O -0.62 -30.65 15.24 -3.06 -0.05 -30.70 16 15 N -0.58 -25.50 5.09 -306.99 -1.56 -27.06 16 16 C -0.33 -18.40 10.16 84.04 0.85 -17.54 16 17 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 18 C -0.01 -0.50 5.50 84.92 0.47 -0.03 16 19 N -0.93 -53.79 13.96 21.66 0.30 -53.49 16 20 Si 0.96 37.14 27.74 68.60 1.90 39.04 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 24 C -0.17 -4.20 7.70 22.46 0.17 -4.02 16 25 C 0.10 2.42 6.70 22.55 0.15 2.57 16 26 O -0.32 -7.33 10.28 -80.01 -0.82 -8.15 16 27 C 0.02 0.35 9.81 113.37 1.11 1.47 16 28 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.42 7.66 -2.39 -0.02 0.40 16 30 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.18 1.92 6.29 -2.91 -0.02 1.90 16 32 H 0.42 8.01 8.47 -92.70 -0.78 7.23 16 33 H 0.41 11.78 7.46 -92.70 -0.69 11.09 16 34 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 35 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.39 14.40 5.76 -92.71 -0.53 13.87 16 37 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 38 H 0.17 4.33 4.02 -2.91 -0.01 4.32 16 39 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 40 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.04 7.66 -2.38 -0.02 1.02 16 Total: -1.00 -75.37 356.89 1.72 -73.64 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -0.92 Total: 41.66 kcal Atomic # 6 Polarization: 25.65 SS G_CDS: 7.35 Total: 33.00 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -5.62 Total: -120.79 kcal Atomic # 8 Polarization: -62.83 SS G_CDS: -1.75 Total: -64.58 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.76 Total: -1.98 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 1.90 Total: 39.04 kcal Total: -75.37 1.72 -73.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349375786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.084 kcal (2) G-P(sol) polarization free energy of solvation -75.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds