Wall clock time and date at job start Sat Apr 11 2020 06:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00168 * 2 1 4 4 O 1.21544 * 120.00226 * 0.02562 * 3 2 1 5 5 C 1.47856 * 119.99677 * 179.97438 * 3 2 1 6 6 C 1.39585 * 120.14610 * 0.02562 * 5 3 2 7 7 C 1.37933 * 119.85363 * 179.97438 * 6 5 3 8 8 C 1.38384 * 120.14274 * 0.27631 * 7 6 5 9 9 C 1.38338 * 120.29154 * 359.44604 * 8 7 6 10 10 C 1.50701 * 119.92469 * 180.25817 * 9 8 7 11 11 N 1.46507 * 109.46726 * 271.16735 * 10 9 8 12 12 C 1.36930 * 119.99810 * 86.84890 * 11 10 9 13 13 H 1.08005 * 120.00193 * 216.87120 * 12 11 10 14 14 C 1.38817 * 120.00408 * 36.86711 * 12 11 10 15 15 N 1.31623 * 119.99843 * 215.31438 * 14 12 11 16 16 Si 1.86798 * 119.99775 * 35.31219 * 14 12 11 17 17 H 1.48496 * 109.46942 * 93.71819 * 16 14 12 18 18 H 1.48501 * 109.47139 * 213.71381 * 16 14 12 19 19 H 1.48499 * 109.47477 * 333.71675 * 16 14 12 20 20 S 1.65594 * 119.99888 * 266.84089 * 11 10 9 21 21 O 1.42097 * 106.40489 * 17.36307 * 20 11 10 22 22 O 1.42101 * 106.40322 * 150.28413 * 20 11 10 23 23 N 1.65600 * 107.22063 * 263.82205 * 20 11 10 24 24 C 1.46497 * 120.00168 * 93.48619 * 23 20 11 25 25 C 1.46502 * 120.00205 * 273.48660 * 23 20 11 26 26 C 1.37976 * 120.14480 * 0.55509 * 9 8 7 27 27 H 1.09001 * 109.47100 * 59.99621 * 1 2 3 28 28 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46876 * 299.99838 * 1 2 3 30 30 H 0.97004 * 119.99761 * 180.02562 * 2 1 3 31 31 H 1.07999 * 120.07754 * 0.02562 * 6 5 3 32 32 H 1.08005 * 119.93207 * 179.97438 * 7 6 5 33 33 H 1.08006 * 119.84947 * 179.70329 * 8 7 6 34 34 H 1.08993 * 109.47462 * 31.16567 * 10 9 8 35 35 H 1.08994 * 109.47052 * 151.17080 * 10 9 8 36 36 H 0.96995 * 119.99661 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.47490 * 94.02905 * 24 23 20 38 38 H 1.09001 * 109.47334 * 214.03310 * 24 23 20 39 39 H 1.09004 * 109.47142 * 334.03311 * 24 23 20 40 40 H 1.09001 * 109.46895 * 64.54803 * 25 23 20 41 41 H 1.09000 * 109.47176 * 184.54967 * 25 23 20 42 42 H 1.09001 * 109.46732 * 304.55055 * 25 23 20 43 43 H 1.07995 * 120.07261 * 179.75005 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5313 2.2198 0.0005 5 6 3.6175 1.1670 0.0006 6 6 4.3184 -0.0401 0.0006 7 6 5.6977 -0.0332 0.0006 8 6 6.3866 1.1670 0.0063 9 6 5.6980 2.3668 0.0006 10 6 6.4566 3.6690 0.0011 11 7 6.7205 4.0798 1.3824 12 6 7.8362 3.6225 2.0313 13 1 7.7898 3.3862 3.0842 14 6 9.0270 3.4625 1.3360 15 7 9.8371 2.4701 1.6379 16 14 9.4796 4.6558 -0.0280 17 1 10.3286 5.7412 0.5253 18 1 10.2276 3.9344 -1.0888 19 1 8.2425 5.2405 -0.6050 20 16 5.6697 5.0973 2.1587 21 8 4.4574 5.0634 1.4182 22 8 5.7457 4.7745 3.5405 23 7 6.2696 6.6330 2.0037 24 6 5.8224 7.4862 0.9000 25 6 7.2476 7.1385 2.9703 26 6 4.3183 2.3739 0.0006 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 3.7819 -0.9774 -0.0003 32 1 6.2413 -0.9664 0.0010 33 1 7.4666 1.1669 0.0112 34 1 7.4016 3.5392 -0.5262 35 1 5.8638 4.4350 -0.4988 36 1 10.6690 2.3581 1.1519 37 1 4.9918 8.1077 1.2346 38 1 6.6456 8.1231 0.5765 39 1 5.4968 6.8624 0.0674 40 1 8.1658 6.5558 2.8966 41 1 7.4631 8.1851 2.7556 42 1 6.8413 7.0505 3.9779 43 1 3.7819 3.3112 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352063083.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:23 Heat of formation + Delta-G solvation = -61.804108 kcal Electronic energy + Delta-G solvation = -29011.779793 eV Core-core repulsion = 24991.798278 eV Total energy + Delta-G solvation = -4019.981515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.91617 -38.26519 -36.11335 -35.81352 -35.29256 -34.63927 -34.56501 -32.39952 -31.00778 -30.61412 -27.52640 -27.00641 -25.94758 -24.07364 -23.72148 -23.01963 -21.42338 -20.10268 -18.43758 -17.97865 -17.36556 -16.52766 -16.42553 -15.95027 -15.65420 -15.46496 -15.08600 -15.00594 -14.45512 -14.30507 -13.95082 -13.58859 -13.33306 -13.29806 -13.01518 -12.85992 -12.76587 -12.44428 -12.36708 -12.12346 -12.08347 -11.80685 -11.60892 -11.45496 -11.18627 -11.04503 -10.87053 -10.77494 -10.64031 -10.51420 -10.45570 -10.08995 -9.73750 -9.15141 -9.13718 -8.50118 -8.45289 -8.32709 -8.16847 -6.73465 -4.09771 1.23654 1.60362 1.86587 2.99490 3.12720 3.15860 3.19624 3.27894 3.87474 4.02466 4.22632 4.56716 4.69111 4.86230 5.05196 5.18502 5.27897 5.36049 5.40506 5.43678 5.55169 5.65894 5.70558 5.79131 5.84657 5.89281 5.97996 6.09507 6.15450 6.24142 6.26134 6.33412 6.40400 6.41083 6.58421 6.70021 6.79708 6.84093 7.13971 7.30370 7.35088 7.44111 7.54387 8.25302 8.36229 8.89798 8.98166 10.34001 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.004903 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.209123 B = 5709.005698 C = 7105.297324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.739 5.739 3 C 0.560 3.440 4 O -0.532 6.532 5 C -0.155 4.155 6 C -0.092 4.092 7 C -0.137 4.137 8 C -0.051 4.051 9 C -0.098 4.098 10 C 0.168 3.832 11 N -0.841 5.841 12 C -0.291 4.291 13 H 0.113 0.887 14 C 0.083 3.917 15 N -0.818 5.818 16 Si 0.845 3.155 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.254 1.254 20 S 2.686 3.314 21 O -1.009 7.009 22 O -0.987 6.987 23 N -1.025 6.025 24 C 0.101 3.899 25 C 0.097 3.903 26 C -0.045 4.045 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.400 0.600 31 H 0.117 0.883 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.278 0.722 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 -3.105 -6.300 9.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.392 5.392 3 C 0.348 3.652 4 O -0.408 6.408 5 C -0.158 4.158 6 C -0.111 4.111 7 C -0.155 4.155 8 C -0.071 4.071 9 C -0.101 4.101 10 C 0.041 3.959 11 N -0.670 5.670 12 C -0.433 4.433 13 H 0.131 0.869 14 C -0.132 4.132 15 N -0.452 5.452 16 Si 0.668 3.332 17 H -0.200 1.200 18 H -0.205 1.205 19 H -0.178 1.178 20 S 2.709 3.291 21 O -0.993 6.993 22 O -0.971 6.971 23 N -0.861 5.861 24 C -0.045 4.045 25 C -0.049 4.049 26 C -0.064 4.064 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.235 0.765 31 H 0.135 0.865 32 H 0.143 0.857 33 H 0.154 0.846 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.376 -2.488 -5.814 9.716 hybrid contribution 1.102 0.334 -0.745 1.371 sum -6.274 -2.154 -6.559 9.328 Atomic orbital electron populations 1.21499 0.79713 1.01873 1.02365 1.45713 1.07558 1.08752 1.77139 1.18447 0.87609 0.83473 0.75652 1.90783 1.69996 1.31103 1.48962 1.19756 0.91971 0.94727 1.09393 1.21123 0.94717 0.96125 0.99142 1.21030 0.93660 0.98340 1.02456 1.21440 1.01109 0.91371 0.93135 1.20354 0.93207 0.96479 1.00024 1.20301 0.98385 0.92258 0.84928 1.53840 1.39792 1.51409 1.21933 1.18928 0.86428 1.40210 0.97722 0.86916 1.25578 0.95421 0.94993 0.97233 1.70053 1.11577 1.23767 1.39839 0.87451 0.79784 0.83595 0.82333 1.19971 1.20524 1.17762 1.07378 0.75149 0.72005 0.74546 1.93427 1.46228 1.86535 1.73108 1.93443 1.87402 1.82845 1.33453 1.58711 1.57291 1.33654 1.36407 1.21274 0.98715 0.95127 0.89424 1.21374 0.92271 0.99239 0.92039 1.21559 0.93646 0.98344 0.92882 0.92315 0.90857 0.92239 0.76522 0.86482 0.85730 0.84641 0.90754 0.90737 0.91192 0.93877 0.92531 0.91570 0.92091 0.92144 0.92451 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.70 59.85 0.64 1.53 16 2 N -0.74 -8.93 5.66 -68.04 -0.39 -9.31 16 3 C 0.56 9.57 7.77 -12.33 -0.10 9.47 16 4 O -0.53 -11.19 16.35 5.33 0.09 -11.10 16 5 C -0.16 -2.70 5.87 -104.97 -0.62 -3.31 16 6 C -0.09 -1.30 9.54 -39.19 -0.37 -1.68 16 7 C -0.14 -2.05 10.03 -39.64 -0.40 -2.45 16 8 C -0.05 -0.93 9.70 -39.49 -0.38 -1.31 16 9 C -0.10 -1.93 5.44 -104.68 -0.57 -2.50 16 10 C 0.17 3.43 4.02 -5.19 -0.02 3.41 16 11 N -0.84 -19.14 2.49 -61.08 -0.15 -19.29 16 12 C -0.29 -7.17 9.44 -15.06 -0.14 -7.31 16 13 H 0.11 3.11 7.65 -52.48 -0.40 2.71 16 14 C 0.08 1.96 5.04 -17.43 -0.09 1.87 16 15 N -0.82 -20.12 13.97 55.49 0.78 -19.35 16 16 Si 0.84 17.63 26.33 -169.99 -4.48 13.16 16 17 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.25 -5.01 5.96 56.52 0.34 -4.68 16 20 S 2.69 62.14 5.99 -107.50 -0.64 61.49 16 21 O -1.01 -24.09 14.02 -57.17 -0.80 -24.89 16 22 O -0.99 -25.90 16.30 -57.17 -0.93 -26.83 16 23 N -1.02 -19.97 3.64 -129.20 -0.47 -20.44 16 24 C 0.10 1.63 10.29 59.85 0.62 2.25 16 25 C 0.10 1.69 10.41 59.85 0.62 2.31 16 26 C -0.04 -0.89 8.85 -39.19 -0.35 -1.24 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.40 3.57 6.86 -40.82 -0.28 3.29 16 31 H 0.12 1.17 6.41 -52.49 -0.34 0.83 16 32 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.14 2.52 8.06 -52.48 -0.42 2.10 16 34 H 0.07 1.47 4.26 -51.93 -0.22 1.24 16 35 H 0.07 1.41 7.44 -51.93 -0.39 1.02 16 36 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.07 1.07 7.55 -51.93 -0.39 0.68 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 42 H 0.06 1.00 7.84 -51.93 -0.41 0.60 16 43 H 0.15 3.28 6.24 -52.49 -0.33 2.95 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -32.47 367.35 -8.36 -40.82 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -5.74 Total: 9.16 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.15 Total: 1.04 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -0.23 Total: -68.39 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -1.65 Total: -62.82 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -4.48 Total: 13.16 kcal Atomic # 16 Polarization: 62.14 SS G_CDS: -0.64 Total: 61.49 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.47 -8.36 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352063083.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.979 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds