Wall clock time and date at job start Sat Apr 11 2020 06:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42891 * 114.00279 * 2 1 4 4 C 1.52997 * 109.47221 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47289 * 64.99848 * 4 3 2 6 6 C 1.46493 * 119.99811 * 89.99895 * 5 4 3 7 7 C 1.50706 * 109.47492 * 90.00399 * 6 5 4 8 8 C 1.33387 * 125.20345 * 89.99467 * 7 6 5 9 9 C 1.38423 * 114.92103 * 179.97438 * 8 7 6 10 10 C 1.33391 * 114.91854 * 359.97438 * 9 8 7 11 11 S 1.75879 * 109.59572 * 359.76216 * 10 9 8 12 12 C 1.34778 * 120.00058 * 270.00324 * 5 4 3 13 13 O 1.21586 * 119.99711 * 0.02562 * 12 5 4 14 14 N 1.34774 * 119.99771 * 179.97438 * 12 5 4 15 15 C 1.46498 * 119.99468 * 179.97438 * 14 12 5 16 16 C 1.50702 * 109.47032 * 180.02562 * 15 14 12 17 17 O 1.21295 * 119.99898 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00145 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99750 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00600 * 0.02562 * 19 18 16 21 21 C 1.38955 * 120.00014 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99597 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00110 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47255 * 89.99999 * 23 21 19 25 25 H 1.48505 * 109.47132 * 209.99966 * 23 21 19 26 26 H 1.48494 * 109.47302 * 329.99752 * 23 21 19 27 27 H 1.08999 * 109.46848 * 300.00631 * 1 2 3 28 28 H 1.09004 * 109.46489 * 59.99914 * 1 2 3 29 29 H 1.08993 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47587 * 59.99890 * 3 2 1 31 31 H 1.09002 * 109.47037 * 300.00040 * 3 2 1 32 32 H 1.09001 * 109.47289 * 304.99720 * 4 3 2 33 33 H 1.09004 * 109.47261 * 184.99976 * 4 3 2 34 34 H 1.09006 * 109.47571 * 210.00074 * 6 5 4 35 35 H 1.09005 * 109.47727 * 330.00531 * 6 5 4 36 36 H 1.08004 * 122.53777 * 359.95860 * 8 7 6 37 37 H 1.07997 * 122.53665 * 180.02562 * 9 8 7 38 38 H 1.08004 * 125.19813 * 180.02562 * 10 9 8 39 39 H 0.96999 * 120.00329 * 0.02562 * 14 12 5 40 40 H 1.09004 * 109.47312 * 300.00146 * 15 14 12 41 41 H 1.08996 * 109.47199 * 60.00314 * 15 14 12 42 42 H 0.96993 * 120.00032 * 359.97438 * 18 16 15 43 43 H 0.96998 * 120.00136 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9768 0.5637 -1.2509 6 6 4.2884 1.3995 -2.4129 7 6 5.7463 1.7799 -2.3818 8 6 6.7353 1.0818 -2.9418 9 6 7.9973 1.6281 -2.7835 10 6 8.0329 2.7703 -2.0954 11 16 6.4029 3.2169 -1.6088 12 6 4.0959 -0.7763 -1.3331 13 8 3.8367 -1.4699 -0.3688 14 7 4.5014 -1.3473 -2.4846 15 6 4.6314 -2.8037 -2.5738 16 6 5.0973 -3.1828 -3.9559 17 8 5.3003 -2.3211 -4.7851 18 7 5.2875 -4.4794 -4.2710 19 6 5.7108 -4.8241 -5.5286 20 1 5.8924 -4.0569 -6.2666 21 6 5.9074 -6.1608 -5.8534 22 7 5.6880 -7.0943 -4.9549 23 14 6.4849 -6.6306 -7.5665 24 1 7.9692 -6.6621 -7.5973 25 1 5.9539 -7.9723 -7.9174 26 1 5.9906 -5.6309 -8.5470 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8508 0.5684 0.8427 33 1 3.9786 2.1764 0.0902 34 1 4.0773 0.8444 -3.3270 35 1 3.6770 2.3015 -2.3863 36 1 6.5645 0.1598 -3.4778 37 1 8.8855 1.1652 -3.1873 38 1 8.9258 3.3366 -1.8749 39 1 4.7078 -0.7939 -3.2541 40 1 5.3579 -3.1494 -1.8383 41 1 3.6651 -3.2676 -2.3758 42 1 5.1248 -5.1685 -3.6081 43 1 5.8255 -8.0274 -5.1814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358279755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:32 Heat of formation + Delta-G solvation = -85.331499 kcal Electronic energy + Delta-G solvation = -27633.197079 eV Core-core repulsion = 23612.195340 eV Total energy + Delta-G solvation = -4021.001739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45905 -40.10891 -38.78025 -38.68491 -36.60009 -36.22087 -35.27412 -33.36174 -32.17481 -30.58710 -28.92892 -27.25815 -27.05369 -26.21263 -24.08328 -23.68615 -21.39473 -21.12059 -20.16971 -19.96011 -19.45042 -18.01246 -17.80668 -17.47192 -17.11207 -16.92179 -16.63847 -16.39811 -16.32566 -15.97385 -15.81374 -15.43814 -15.08251 -15.02811 -14.21318 -14.13140 -13.92604 -13.70358 -13.58452 -13.52866 -13.44875 -13.33874 -13.00414 -12.88719 -12.67892 -12.50229 -12.44360 -12.12230 -11.98719 -11.73515 -11.55775 -11.19977 -10.53500 -10.51501 -10.23752 -10.08182 -9.76020 -9.55783 -9.32031 -8.49773 -5.99839 -0.01363 0.71137 1.03386 1.36838 1.42512 1.52712 1.57792 1.86813 1.90960 2.21681 2.28995 2.85598 3.02891 3.17480 3.19613 3.73803 3.94386 4.16076 4.18566 4.24488 4.25276 4.40193 4.42850 4.46537 4.48060 4.51670 4.54052 4.59803 4.66366 4.70644 4.86857 4.94421 5.17312 5.35496 5.36346 5.41005 5.48018 5.53489 5.87384 5.93515 6.39459 6.49178 6.94031 7.04443 7.44106 7.60745 7.95361 8.67334 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010147 B = 0.003233 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.882384 B = 8658.881736 C =10922.176188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.040 3.960 4 C 0.132 3.868 5 N -0.614 5.614 6 C 0.179 3.821 7 C -0.213 4.213 8 C -0.138 4.138 9 C -0.153 4.153 10 C -0.207 4.207 11 S 0.143 5.857 12 C 0.710 3.290 13 O -0.610 6.610 14 N -0.728 5.728 15 C 0.142 3.858 16 C 0.436 3.564 17 O -0.621 6.621 18 N -0.559 5.559 19 C -0.335 4.335 20 H 0.087 0.913 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.997 3.003 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.269 1.269 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.189 0.811 39 H 0.405 0.595 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.398 0.602 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.560 22.651 9.600 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C -0.038 4.038 4 C 0.009 3.991 5 N -0.349 5.349 6 C 0.054 3.946 7 C -0.331 4.331 8 C -0.170 4.170 9 C -0.184 4.184 10 C -0.343 4.343 11 S 0.406 5.594 12 C 0.411 3.589 13 O -0.490 6.490 14 N -0.387 5.387 15 C 0.013 3.987 16 C 0.222 3.778 17 O -0.509 6.509 18 N -0.194 5.194 19 C -0.465 4.465 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.557 5.557 23 Si 0.820 3.180 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.194 1.194 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.160 0.840 38 H 0.206 0.794 39 H 0.245 0.755 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.232 0.768 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.119 23.525 10.561 26.113 hybrid contribution 0.871 -1.955 -1.695 2.730 sum -3.248 21.570 8.866 23.546 Atomic orbital electron populations 1.22803 0.80564 1.02710 1.00652 1.88121 1.20422 1.28616 1.95480 1.23161 0.93747 0.84968 1.01880 1.21586 0.92893 0.99340 0.85257 1.47056 1.70458 1.03075 1.14358 1.20067 0.88989 0.96805 0.88692 1.25041 1.00195 1.00968 1.06923 1.20339 0.93113 1.01176 1.02366 1.20311 0.98354 0.97203 1.02484 1.25977 1.01607 1.01487 1.05225 1.83735 0.99034 1.21907 1.54771 1.15831 0.77741 0.82729 0.82551 1.90885 1.58075 1.62254 1.37773 1.44903 1.72604 1.06875 1.14351 1.20541 1.02389 0.81603 0.94167 1.20349 0.84112 0.83201 0.90091 1.90455 1.58833 1.49479 1.52090 1.41822 1.58117 1.06038 1.13443 1.19739 1.43787 0.92953 0.89990 0.89496 1.26129 0.96718 0.94778 1.03508 1.69687 1.48289 1.01613 1.36122 0.84871 0.78523 0.77742 0.76873 1.19573 1.19684 1.19375 0.92553 0.93566 0.90612 0.90078 0.91968 0.91023 0.86020 0.89679 0.85582 0.86388 0.83960 0.79409 0.75499 0.89571 0.89501 0.76815 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -10.94 9.49 -141.54 -1.34 -12.29 16 3 C 0.04 0.72 6.28 71.98 0.45 1.17 16 4 C 0.13 2.65 5.86 86.38 0.51 3.15 16 5 N -0.61 -15.59 2.44 -844.17 -2.06 -17.65 16 6 C 0.18 3.68 5.67 85.64 0.49 4.17 16 7 C -0.21 -4.66 6.09 24.59 0.15 -4.51 16 8 C -0.14 -3.68 9.87 21.22 0.21 -3.47 16 9 C -0.15 -3.53 10.18 21.22 0.22 -3.32 16 10 C -0.21 -3.71 11.23 66.72 0.75 -2.96 16 11 S 0.14 2.31 23.33 -56.49 -1.32 0.99 16 12 C 0.71 24.77 7.91 179.05 1.42 26.19 16 13 O -0.61 -25.46 15.13 3.45 0.05 -25.40 16 14 N -0.73 -26.35 5.39 -482.30 -2.60 -28.95 16 15 C 0.14 5.62 6.15 85.63 0.53 6.15 16 16 C 0.44 20.72 7.85 87.66 0.69 21.40 16 17 O -0.62 -32.35 15.24 -3.08 -0.05 -32.40 16 18 N -0.56 -28.69 5.29 -306.98 -1.62 -30.31 16 19 C -0.34 -18.68 9.68 84.04 0.81 -17.86 16 20 H 0.09 5.07 7.16 -2.91 -0.02 5.05 16 21 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 22 N -0.92 -49.42 13.05 21.66 0.28 -49.14 16 23 Si 1.00 42.15 29.55 68.60 2.03 44.18 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 1.81 7.42 -2.39 -0.02 1.80 16 33 H 0.12 1.54 8.07 -2.38 -0.02 1.52 16 34 H 0.09 1.98 6.36 -2.38 -0.02 1.97 16 35 H 0.13 1.66 8.07 -2.38 -0.02 1.64 16 36 H 0.12 3.81 7.01 -2.91 -0.02 3.79 16 37 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.41 14.42 3.91 -92.71 -0.36 14.06 16 40 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 41 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 43 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -72.53 380.83 1.26 -71.27 By element: Atomic # 1 Polarization: 47.92 SS G_CDS: -0.04 Total: 47.88 kcal Atomic # 6 Polarization: 23.90 SS G_CDS: 7.93 Total: 31.83 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -6.00 Total: -126.05 kcal Atomic # 8 Polarization: -68.75 SS G_CDS: -1.34 Total: -70.09 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.32 Total: 0.99 kcal Total: -72.53 1.26 -71.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358279755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.062 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds