Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37100 * 119.99939 * 2 1 4 4 H 1.08001 * 119.99768 * 202.40454 * 3 2 1 5 5 C 1.38941 * 120.00143 * 22.40888 * 3 2 1 6 6 N 1.31414 * 120.00176 * 11.58750 * 5 3 2 7 7 Si 1.86800 * 120.00046 * 191.59743 * 5 3 2 8 8 H 1.48496 * 109.47516 * 89.99488 * 7 5 3 9 9 H 1.48502 * 109.47064 * 209.99823 * 7 5 3 10 10 H 1.48499 * 109.46971 * 329.99299 * 7 5 3 11 11 C 1.34784 * 120.00101 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00016 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99672 * 0.27950 * 11 2 1 14 14 N 1.46504 * 109.46726 * 179.72242 * 13 11 2 15 15 C 1.34537 * 118.86892 * 269.72908 * 14 13 11 16 16 O 1.21239 * 120.22629 * 0.02562 * 15 14 13 17 17 C 1.51143 * 119.54540 * 179.83875 * 15 14 13 18 18 N 1.46937 * 117.97556 * 0.40876 * 17 15 14 19 19 C 1.38491 * 118.45492 * 359.83241 * 18 17 15 20 20 C 1.36111 * 108.74066 * 179.97438 * 19 18 17 21 21 C 1.41519 * 107.88415 * 0.02562 * 20 19 18 22 22 C 1.40131 * 133.36382 * 180.02562 * 21 20 19 23 23 C 1.36429 * 119.84866 * 179.97438 * 22 21 20 24 24 C 1.38954 * 120.61407 * 359.97438 * 23 22 21 25 25 C 1.37658 * 120.64362 * 359.97438 * 24 23 22 26 26 C 1.37244 * 132.50530 * 179.81184 * 18 17 15 27 27 C 1.34067 * 118.87211 * 90.00115 * 14 13 11 28 28 O 1.21606 * 118.95502 * 359.97438 * 27 14 13 29 29 H 1.08995 * 109.47249 * 272.15567 * 1 2 3 30 30 H 1.08998 * 109.47368 * 32.15780 * 1 2 3 31 31 H 1.09006 * 109.47102 * 152.15656 * 1 2 3 32 32 H 0.96998 * 120.00216 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47497 * 299.72183 * 13 11 2 34 34 H 1.09004 * 109.47448 * 59.72264 * 13 11 2 35 35 H 1.09002 * 107.85968 * 238.15370 * 17 15 14 36 36 H 1.08998 * 107.61397 * 122.45733 * 17 15 14 37 37 H 1.07993 * 126.05865 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.07145 * 0.02562 * 22 21 20 39 39 H 1.07993 * 119.69120 * 179.97438 * 23 22 21 40 40 H 1.07992 * 119.67955 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.08230 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5345 2.3452 0.4587 6 7 0.3895 2.2707 1.0995 7 14 2.3336 4.0078 0.1643 8 1 1.8582 4.5637 -1.1280 9 1 1.9688 4.9343 1.2660 10 1 3.8092 3.8470 0.1211 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 -0.0053 14 7 2.3375 -3.5858 -0.0101 15 6 2.7554 -4.0779 -1.1905 16 8 2.3474 -3.6030 -2.2287 17 6 3.7403 -5.2242 -1.2134 18 7 4.1983 -5.7652 0.0737 19 6 3.7100 -5.1983 1.2391 20 6 4.2587 -5.8454 2.3034 21 6 5.1201 -6.8509 1.8038 22 6 5.9369 -7.8102 2.4173 23 6 6.6716 -8.6668 1.6506 24 6 6.6181 -8.5985 0.2638 25 6 5.8227 -7.6658 -0.3626 26 6 5.0639 -6.7797 0.3978 27 6 2.7581 -4.0830 1.1617 28 8 2.3376 -3.5951 2.1932 29 1 -0.3633 0.0387 1.0269 30 1 -0.3634 0.8700 -0.5470 31 1 -0.3634 -0.9087 -0.4800 32 1 -0.0407 3.0791 1.4194 33 1 0.7587 -2.5340 0.8844 34 1 0.7587 -2.5262 -0.8955 35 1 4.6198 -4.8982 -1.7686 36 1 3.2835 -6.0404 -1.7731 37 1 4.0702 -5.6296 3.3447 38 1 5.9840 -7.8717 3.4944 39 1 7.3005 -9.4048 2.1261 40 1 7.2057 -9.2843 -0.3284 41 1 5.7877 -7.6210 -1.4411 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363953764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = -0.945014 kcal Electronic energy + Delta-G solvation = -29249.444384 eV Core-core repulsion = 25096.657966 eV Total energy + Delta-G solvation = -4152.786418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39242 -40.80444 -38.86170 -38.27950 -37.24036 -35.26640 -34.57503 -33.31339 -31.76482 -31.16516 -29.65407 -28.52143 -27.28466 -26.15622 -24.85994 -24.08204 -22.79619 -21.97674 -21.54063 -19.44400 -18.89661 -18.21424 -17.39768 -16.95202 -16.84583 -16.49422 -16.07713 -15.98220 -15.29973 -14.97251 -14.64210 -14.50387 -14.41173 -14.20350 -14.16355 -14.05462 -13.76388 -13.60716 -13.01332 -12.93890 -12.41941 -12.23959 -12.04110 -11.57922 -11.50220 -11.27279 -11.25992 -11.22201 -10.93154 -10.77021 -10.39378 -10.37029 -10.28524 -10.08899 -10.00052 -9.06361 -8.53018 -8.43029 -8.00586 -7.74703 -6.34396 -3.91532 0.40596 1.30830 1.47266 2.04106 2.12895 2.35191 3.14760 3.16877 3.24254 3.30120 3.31832 3.62888 3.78191 4.11015 4.19846 4.34824 4.60270 4.67520 4.76262 4.81633 4.86226 5.07352 5.08434 5.13468 5.22151 5.36792 5.37975 5.51860 5.63514 5.69143 5.73380 5.74054 6.13770 6.22236 6.25721 6.32916 6.40378 6.56369 6.82889 6.85867 6.97566 7.18374 7.29651 7.53962 7.66652 8.06120 8.42384 9.12371 9.34812 9.87524 10.69065 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002727 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.792239 B =10265.750639 C =10498.993643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.437 5.437 3 C -0.305 4.305 4 H 0.099 0.901 5 C 0.031 3.969 6 N -0.880 5.880 7 Si 0.930 3.070 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.437 3.563 12 O -0.586 6.586 13 C 0.084 3.916 14 N -0.540 5.540 15 C 0.540 3.460 16 O -0.471 6.471 17 C 0.085 3.915 18 N -0.473 5.473 19 C 0.007 3.993 20 C -0.085 4.085 21 C -0.118 4.118 22 C -0.054 4.054 23 C -0.151 4.151 24 C -0.085 4.085 25 C -0.133 4.133 26 C 0.134 3.866 27 C 0.590 3.410 28 O -0.470 6.470 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.026 0.974 32 H 0.269 0.731 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.161 0.839 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 -22.011 -1.481 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.156 5.156 3 C -0.433 4.433 4 H 0.117 0.883 5 C -0.172 4.172 6 N -0.520 5.520 7 Si 0.756 3.244 8 H -0.203 1.203 9 H -0.208 1.208 10 H -0.194 1.194 11 C 0.223 3.777 12 O -0.471 6.471 13 C -0.040 4.040 14 N -0.281 5.281 15 C 0.328 3.672 16 O -0.342 6.342 17 C -0.039 4.039 18 N -0.159 5.159 19 C -0.101 4.101 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.073 4.073 23 C -0.171 4.171 24 C -0.104 4.104 25 C -0.154 4.154 26 C 0.026 3.974 27 C 0.380 3.620 28 O -0.341 6.341 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.178 0.822 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.407 -21.186 -1.775 21.937 hybrid contribution 0.152 1.050 -0.205 1.081 sum 5.559 -20.136 -1.980 20.982 Atomic orbital electron populations 1.21596 0.80851 0.99016 1.02083 1.43514 1.05653 1.04476 1.61944 1.19665 0.99591 0.83502 1.40546 0.88322 1.25367 0.96530 1.00160 0.95174 1.69994 1.17272 1.29425 1.35270 0.85870 0.79667 0.80975 0.77875 1.20293 1.20834 1.19356 1.19893 0.88245 0.84654 0.84912 1.90523 1.13639 1.86693 1.56208 1.21737 0.91265 0.85160 1.05843 1.46076 1.42731 1.32431 1.06877 1.20139 0.80645 0.82751 0.83676 1.90839 1.54132 1.57773 1.31427 1.21771 1.00236 0.97047 0.84839 1.44227 1.37768 1.28563 1.05300 1.20329 1.03304 0.99314 0.87125 1.20759 0.97018 0.95020 0.98302 1.18109 1.02426 1.00067 0.91614 1.20407 0.94049 0.92904 0.99891 1.20649 1.01758 1.00905 0.93745 1.20892 0.97516 0.97266 0.94761 1.20097 0.99340 0.96739 0.99175 1.18065 0.94258 0.90948 0.94113 1.17051 0.80143 0.81456 0.83391 1.90880 1.53308 1.57285 1.32583 0.91912 0.90834 0.95582 0.92118 0.86525 0.86934 0.85754 0.85963 0.82179 0.85388 0.85722 0.85435 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.43 8.53 59.85 0.51 2.94 16 2 N -0.44 -11.55 3.02 -122.20 -0.37 -11.92 16 3 C -0.31 -8.73 9.29 -14.94 -0.14 -8.87 16 4 H 0.10 2.97 7.41 -52.49 -0.39 2.58 16 5 C 0.03 0.84 5.11 -17.47 -0.09 0.75 16 6 N -0.88 -23.68 10.62 55.50 0.59 -23.09 16 7 Si 0.93 21.13 29.57 -169.99 -5.03 16.10 16 8 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 C 0.44 11.10 7.69 -10.98 -0.08 11.01 16 12 O -0.59 -16.86 16.12 5.55 0.09 -16.78 16 13 C 0.08 1.65 4.00 -5.19 -0.02 1.63 16 14 N -0.54 -9.76 2.03 -118.11 -0.24 -10.00 16 15 C 0.54 8.60 7.75 -10.88 -0.08 8.51 16 16 O -0.47 -8.50 16.59 5.59 0.09 -8.41 16 17 C 0.09 0.97 6.93 -4.74 -0.03 0.94 16 18 N -0.47 -6.00 3.30 -111.03 -0.37 -6.36 16 19 C 0.01 0.10 6.81 -82.15 -0.56 -0.46 16 20 C -0.08 -1.10 10.81 -39.10 -0.42 -1.52 16 21 C -0.12 -1.36 6.16 -106.93 -0.66 -2.02 16 22 C -0.05 -0.48 10.06 -39.52 -0.40 -0.88 16 23 C -0.15 -1.16 9.97 -39.97 -0.40 -1.55 16 24 C -0.08 -0.64 10.02 -39.53 -0.40 -1.03 16 25 C -0.13 -1.18 10.08 -39.41 -0.40 -1.58 16 26 C 0.13 1.54 7.08 -84.06 -0.60 0.95 16 27 C 0.59 10.60 7.56 -13.10 -0.10 10.50 16 28 O -0.47 -9.66 16.35 5.27 0.09 -9.57 16 29 H 0.06 1.46 7.54 -51.93 -0.39 1.07 16 30 H 0.07 1.72 7.06 -51.93 -0.37 1.36 16 31 H 0.03 0.47 6.35 -51.93 -0.33 0.14 16 32 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.12 2.16 7.25 -51.93 -0.38 1.78 16 34 H 0.11 1.97 6.59 -51.93 -0.34 1.63 16 35 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -35.73 353.81 -7.96 -43.70 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.29 Total: 1.69 kcal Atomic # 6 Polarization: 23.18 SS G_CDS: -3.86 Total: 19.32 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.38 Total: -51.37 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: 0.27 Total: -34.76 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.73 -7.96 -43.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363953764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.751 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds