Wall clock time and date at job start Sat Apr 11 2020 06:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37100 * 119.99939 * 2 1 4 4 H 1.08001 * 119.99768 * 202.40454 * 3 2 1 5 5 C 1.38941 * 120.00143 * 22.40888 * 3 2 1 6 6 N 1.31414 * 120.00176 * 11.58750 * 5 3 2 7 7 Si 1.86800 * 120.00046 * 191.59743 * 5 3 2 8 8 H 1.48496 * 109.47516 * 89.99488 * 7 5 3 9 9 H 1.48502 * 109.47064 * 209.99823 * 7 5 3 10 10 H 1.48499 * 109.46971 * 329.99299 * 7 5 3 11 11 C 1.34784 * 120.00101 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00016 * 179.97438 * 11 2 1 13 13 C 1.50700 * 119.99672 * 0.27950 * 11 2 1 14 14 N 1.46504 * 109.46726 * 179.72242 * 13 11 2 15 15 C 1.34537 * 118.86892 * 269.72908 * 14 13 11 16 16 O 1.21239 * 120.22629 * 0.02562 * 15 14 13 17 17 C 1.51143 * 119.54540 * 179.83875 * 15 14 13 18 18 N 1.46937 * 117.97556 * 0.40876 * 17 15 14 19 19 C 1.38491 * 118.45492 * 359.83241 * 18 17 15 20 20 C 1.36111 * 108.74066 * 179.97438 * 19 18 17 21 21 C 1.41519 * 107.88415 * 0.02562 * 20 19 18 22 22 C 1.40131 * 133.36382 * 180.02562 * 21 20 19 23 23 C 1.36429 * 119.84866 * 179.97438 * 22 21 20 24 24 C 1.38954 * 120.61407 * 359.97438 * 23 22 21 25 25 C 1.37658 * 120.64362 * 359.97438 * 24 23 22 26 26 C 1.37244 * 132.50530 * 179.81184 * 18 17 15 27 27 C 1.34067 * 118.87211 * 90.00115 * 14 13 11 28 28 O 1.21606 * 118.95502 * 359.97438 * 27 14 13 29 29 H 1.08995 * 109.47249 * 272.15567 * 1 2 3 30 30 H 1.08998 * 109.47368 * 32.15780 * 1 2 3 31 31 H 1.09006 * 109.47102 * 152.15656 * 1 2 3 32 32 H 0.96998 * 120.00216 * 180.02562 * 6 5 3 33 33 H 1.09002 * 109.47497 * 299.72183 * 13 11 2 34 34 H 1.09004 * 109.47448 * 59.72264 * 13 11 2 35 35 H 1.09002 * 107.85968 * 238.15370 * 17 15 14 36 36 H 1.08998 * 107.61397 * 122.45733 * 17 15 14 37 37 H 1.07993 * 126.05865 * 180.02562 * 20 19 18 38 38 H 1.07996 * 120.07145 * 0.02562 * 22 21 20 39 39 H 1.07993 * 119.69120 * 179.97438 * 23 22 21 40 40 H 1.07992 * 119.67955 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.08230 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5345 2.3452 0.4587 6 7 0.3895 2.2707 1.0995 7 14 2.3336 4.0078 0.1643 8 1 1.8582 4.5637 -1.1280 9 1 1.9688 4.9343 1.2660 10 1 3.8092 3.8470 0.1211 11 6 2.1389 -1.1673 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 -0.0053 14 7 2.3375 -3.5858 -0.0101 15 6 2.7554 -4.0779 -1.1905 16 8 2.3474 -3.6030 -2.2287 17 6 3.7403 -5.2242 -1.2134 18 7 4.1983 -5.7652 0.0737 19 6 3.7100 -5.1983 1.2391 20 6 4.2587 -5.8454 2.3034 21 6 5.1201 -6.8509 1.8038 22 6 5.9369 -7.8102 2.4173 23 6 6.6716 -8.6668 1.6506 24 6 6.6181 -8.5985 0.2638 25 6 5.8227 -7.6658 -0.3626 26 6 5.0639 -6.7797 0.3978 27 6 2.7581 -4.0830 1.1617 28 8 2.3376 -3.5951 2.1932 29 1 -0.3633 0.0387 1.0269 30 1 -0.3634 0.8700 -0.5470 31 1 -0.3634 -0.9087 -0.4800 32 1 -0.0407 3.0791 1.4194 33 1 0.7587 -2.5340 0.8844 34 1 0.7587 -2.5262 -0.8955 35 1 4.6198 -4.8982 -1.7686 36 1 3.2835 -6.0404 -1.7731 37 1 4.0702 -5.6296 3.3447 38 1 5.9840 -7.8717 3.4944 39 1 7.3005 -9.4048 2.1261 40 1 7.2057 -9.2843 -0.3284 41 1 5.7877 -7.6210 -1.4411 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363953764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:39 Heat of formation + Delta-G solvation = -24.032950 kcal Electronic energy + Delta-G solvation = -29250.445552 eV Core-core repulsion = 25096.657966 eV Total energy + Delta-G solvation = -4153.787586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.121 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.48124 -41.94325 -40.25744 -40.11567 -38.05029 -36.94146 -36.34690 -34.26675 -33.78542 -32.09642 -30.66946 -29.74791 -28.49439 -27.91912 -26.39939 -25.63846 -23.90536 -22.79172 -22.46996 -21.18524 -19.98351 -19.29575 -19.11216 -18.71060 -18.13302 -17.63631 -17.53314 -16.90254 -16.68677 -16.39272 -16.20281 -15.96903 -15.77695 -15.69775 -15.54740 -15.04108 -14.82252 -14.46868 -14.36538 -14.02994 -13.86999 -13.79766 -13.46741 -13.17248 -13.10635 -12.71561 -12.66226 -12.43834 -12.29220 -12.19586 -12.08228 -11.87294 -11.72580 -11.56416 -11.09888 -10.88747 -10.42422 -9.82039 -9.31578 -8.80056 -8.40910 -6.08184 -0.56626 0.37088 0.64527 0.93838 1.16072 1.21418 1.31798 1.36617 1.49507 1.82983 1.98273 2.22233 2.22846 2.91921 2.93942 2.99859 3.22058 3.45990 3.75107 3.83100 3.86337 3.95581 4.01667 4.06204 4.13140 4.19552 4.37186 4.39820 4.53015 4.53230 4.71269 4.81529 4.95204 5.08178 5.29729 5.31016 5.36307 5.50974 5.57690 5.62710 5.69591 5.88927 5.95865 6.02231 6.16863 6.31552 6.40211 7.03870 7.30732 7.83954 8.60747 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.002727 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.792239 B =10265.750639 C =10498.993643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.453 5.453 3 C -0.348 4.348 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.892 5.892 7 Si 0.994 3.006 8 H -0.262 1.262 9 H -0.270 1.270 10 H -0.278 1.278 11 C 0.424 3.576 12 O -0.630 6.630 13 C 0.095 3.905 14 N -0.550 5.550 15 C 0.536 3.464 16 O -0.498 6.498 17 C 0.091 3.909 18 N -0.474 5.474 19 C -0.033 4.033 20 C -0.075 4.075 21 C -0.142 4.142 22 C -0.061 4.061 23 C -0.148 4.148 24 C -0.071 4.071 25 C -0.144 4.144 26 C 0.128 3.872 27 C 0.588 3.412 28 O -0.514 6.514 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.276 0.724 33 H 0.125 0.875 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.794 -24.538 -2.283 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.171 5.171 3 C -0.476 4.476 4 H 0.087 0.913 5 C -0.203 4.203 6 N -0.530 5.530 7 Si 0.817 3.183 8 H -0.186 1.186 9 H -0.194 1.194 10 H -0.203 1.203 11 C 0.213 3.787 12 O -0.518 6.518 13 C -0.029 4.029 14 N -0.291 5.291 15 C 0.326 3.674 16 O -0.370 6.370 17 C -0.032 4.032 18 N -0.160 5.160 19 C -0.140 4.140 20 C -0.102 4.102 21 C -0.146 4.146 22 C -0.079 4.079 23 C -0.167 4.167 24 C -0.091 4.091 25 C -0.165 4.165 26 C 0.021 3.979 27 C 0.381 3.619 28 O -0.388 6.388 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.182 0.818 37 H 0.182 0.818 38 H 0.163 0.837 39 H 0.173 0.827 40 H 0.179 0.821 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.636 -23.744 -2.592 24.789 hybrid contribution -0.118 1.671 0.099 1.678 sum 6.519 -22.073 -2.493 23.150 Atomic orbital electron populations 1.21577 0.78795 1.00632 1.01677 1.43799 1.07085 1.04389 1.61827 1.19603 0.99297 0.85517 1.43136 0.91257 1.26159 0.97008 1.03004 0.94145 1.70064 1.17684 1.30735 1.34509 0.84928 0.78077 0.76576 0.78690 1.18640 1.19427 1.20314 1.20828 0.88168 0.86249 0.83484 1.90468 1.15773 1.87720 1.57876 1.21520 0.91243 0.82958 1.07209 1.46266 1.42836 1.31938 1.08011 1.20946 0.80643 0.83319 0.82490 1.90814 1.55283 1.59000 1.31892 1.21812 0.99920 0.96574 0.84918 1.44227 1.38203 1.28904 1.04697 1.20009 1.04979 1.00127 0.88897 1.21025 0.96236 0.94677 0.98290 1.18340 1.03371 1.00811 0.92110 1.20719 0.93610 0.92418 1.01183 1.21088 1.00985 1.00560 0.94020 1.21399 0.96128 0.96440 0.95106 1.20465 0.99151 0.96442 1.00412 1.18468 0.94111 0.90830 0.94524 1.17562 0.79927 0.81708 0.82699 1.90832 1.55223 1.59054 1.33725 0.93013 0.92068 0.91247 0.91368 0.85694 0.84659 0.83933 0.81800 0.81762 0.83669 0.82736 0.82080 0.83567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.31 8.53 127.77 1.09 6.40 16 2 N -0.45 -24.86 3.02 -658.89 -1.99 -26.84 16 3 C -0.35 -20.76 9.29 84.04 0.78 -19.98 16 4 H 0.07 4.44 7.41 -2.91 -0.02 4.42 16 5 C 0.00 -0.04 5.11 84.92 0.43 0.39 16 6 N -0.89 -48.39 10.62 21.66 0.23 -48.16 16 7 Si 0.99 43.79 29.57 68.60 2.03 45.82 16 8 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 9 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 C 0.42 22.56 7.69 87.66 0.67 23.24 16 12 O -0.63 -38.36 16.12 -3.06 -0.05 -38.41 16 13 C 0.10 3.86 4.00 85.63 0.34 4.20 16 14 N -0.55 -20.54 2.03 -764.77 -1.55 -22.08 16 15 C 0.54 17.14 7.75 87.84 0.68 17.82 16 16 O -0.50 -18.02 16.59 -2.90 -0.05 -18.07 16 17 C 0.09 1.94 6.93 85.69 0.59 2.54 16 18 N -0.47 -11.59 3.30 -505.18 -1.67 -13.25 16 19 C -0.03 -1.01 6.81 39.84 0.27 -0.74 16 20 C -0.08 -1.98 10.81 22.58 0.24 -1.74 16 21 C -0.14 -3.11 6.16 -21.36 -0.13 -3.24 16 22 C -0.06 -0.93 10.06 22.31 0.22 -0.71 16 23 C -0.15 -1.63 9.97 22.02 0.22 -1.41 16 24 C -0.07 -0.74 10.02 22.30 0.22 -0.52 16 25 C -0.14 -2.04 10.08 22.38 0.23 -1.81 16 26 C 0.13 2.70 7.08 39.19 0.28 2.98 16 27 C 0.59 22.21 7.56 86.60 0.66 22.86 16 28 O -0.51 -22.53 16.35 -4.05 -0.07 -22.60 16 29 H 0.05 2.46 7.54 -2.39 -0.02 2.44 16 30 H 0.06 2.91 7.06 -2.39 -0.02 2.89 16 31 H 0.07 2.51 6.35 -2.38 -0.02 2.49 16 32 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 33 H 0.13 4.80 7.25 -2.39 -0.02 4.78 16 34 H 0.14 4.76 6.59 -2.38 -0.02 4.74 16 35 H 0.14 2.57 8.14 -2.39 -0.02 2.56 16 36 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -82.85 353.81 4.79 -78.06 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.09 Total: 15.26 kcal Atomic # 6 Polarization: 43.47 SS G_CDS: 6.80 Total: 50.28 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.97 Total: -110.34 kcal Atomic # 8 Polarization: -78.91 SS G_CDS: -0.16 Total: -79.07 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -82.85 4.79 -78.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363953764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.028 kcal (2) G-P(sol) polarization free energy of solvation -82.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds