Wall clock time and date at job start Sat Apr 11 2020 06:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 116.99777 * 2 1 4 4 O 1.20818 * 120.00309 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99871 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47031 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.47079 * 180.02562 * 6 5 3 8 8 C 1.33417 * 122.71570 * 124.94889 * 7 6 5 9 9 S 1.76172 * 108.06652 * 180.02562 * 8 7 6 10 10 C 1.70968 * 90.34489 * 0.02562 * 9 8 7 11 11 N 1.39006 * 124.94258 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00092 * 0.03053 * 11 10 9 13 13 O 1.21578 * 120.00028 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99605 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99662 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47155 * 180.02562 * 16 15 14 18 18 C 1.50693 * 109.47118 * 180.02562 * 17 16 15 19 19 H 1.08007 * 120.00183 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00121 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00324 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46866 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46998 * 120.00205 * 22 20 18 25 25 H 1.48497 * 109.46825 * 240.00081 * 22 20 18 26 26 N 1.29623 * 110.10783 * 359.97438 * 10 9 8 27 27 H 1.09000 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47139 * 300.00527 * 1 2 3 29 29 H 1.09004 * 109.46971 * 60.00283 * 1 2 3 30 30 H 1.09004 * 109.46930 * 60.00149 * 5 3 2 31 31 H 1.09001 * 109.47060 * 300.00369 * 5 3 2 32 32 H 1.08991 * 109.47355 * 60.00015 * 6 5 3 33 33 H 1.09002 * 109.47000 * 299.99769 * 6 5 3 34 34 H 1.07992 * 125.96546 * 0.02562 * 8 7 6 35 35 H 0.97005 * 119.99898 * 180.02562 * 11 10 9 36 36 H 0.96995 * 120.00331 * 0.02562 * 14 12 11 37 37 H 1.08993 * 109.47380 * 300.00626 * 15 14 12 38 38 H 1.09000 * 109.46674 * 60.00502 * 15 14 12 39 39 H 1.08994 * 109.47188 * 300.00975 * 16 15 14 40 40 H 1.09002 * 109.46409 * 60.00371 * 16 15 14 41 41 H 1.09001 * 109.47202 * 300.00457 * 17 16 15 42 42 H 1.09000 * 109.46703 * 60.00611 * 17 16 15 43 43 H 0.96994 * 120.00553 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 0.0011 7 6 5.5050 2.8211 0.0011 8 6 6.1913 3.5013 -0.9188 9 16 7.9069 3.3349 -0.5542 10 6 7.5348 2.3638 0.8028 11 7 8.4727 1.8074 1.6648 12 6 9.7875 2.0206 1.4587 13 8 10.1532 2.6991 0.5185 14 7 10.6967 1.4815 2.2948 15 6 12.1258 1.7127 2.0704 16 6 12.9347 0.9961 3.1536 17 6 14.4272 1.2381 2.9196 18 6 15.2238 0.5318 3.9861 19 1 14.7164 -0.0336 4.7538 20 6 16.6005 0.6073 3.9818 21 7 17.2185 1.2961 3.0474 22 14 17.5880 -0.2677 5.3043 23 1 16.6628 -0.9672 6.2315 24 1 18.4954 -1.2578 4.6707 25 1 18.3909 0.7260 6.0614 26 7 6.2509 2.2219 0.9107 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 3.6101 3.2361 0.8910 33 1 3.6107 3.2365 -0.8889 34 1 5.7690 4.0569 -1.7430 35 1 8.1809 1.2658 2.4148 36 1 10.4049 0.9398 3.0447 37 1 12.4071 1.3262 1.0909 38 1 12.3316 2.7823 2.1117 39 1 12.6533 1.3830 4.1329 40 1 12.7289 -0.0735 3.1127 41 1 14.7088 0.8515 1.9402 42 1 14.6326 2.3078 2.9608 43 1 18.1869 1.3496 3.0446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425924635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:46 Heat of formation + Delta-G solvation = -83.264120 kcal Electronic energy + Delta-G solvation = -25189.242909 eV Core-core repulsion = 21168.330818 eV Total energy + Delta-G solvation = -4020.912091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94945 -40.72269 -39.73736 -37.01713 -36.02812 -35.21278 -33.65715 -33.28781 -31.33347 -29.85385 -28.21752 -26.95108 -25.66233 -24.30857 -22.96087 -21.66840 -21.19987 -20.82844 -20.10627 -18.54913 -17.90251 -17.80876 -17.17592 -16.98388 -16.71963 -16.34545 -16.21330 -15.36414 -15.05383 -14.64297 -14.53835 -14.41870 -14.29748 -14.07083 -13.67758 -13.27268 -13.16015 -12.79637 -12.37477 -12.29966 -11.97783 -11.94678 -11.82196 -11.52770 -11.23617 -11.03146 -10.96358 -10.87431 -10.83783 -10.61971 -10.28531 -9.98521 -9.88460 -9.55854 -9.30261 -9.18770 -9.17041 -8.43067 -8.32018 -6.07449 -4.10850 0.65749 1.03550 1.74866 1.80580 2.12267 2.24992 2.50117 3.00835 3.26457 3.34390 3.37381 3.83825 4.18249 4.39818 4.42126 4.56661 4.66760 4.68445 4.75763 4.99614 5.11248 5.19596 5.27764 5.28772 5.44965 5.53002 5.60833 5.63787 5.68910 5.95681 6.00312 6.04909 6.18490 6.33230 6.46990 6.70757 6.88230 7.32623 7.45371 7.56426 7.67315 7.67541 7.90556 8.12521 8.31280 8.95847 9.53950 11.03782 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.001499 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.649585 B =18678.943966 C =19638.168918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.462 3.538 4 O -0.510 6.510 5 C -0.106 4.106 6 C -0.028 4.028 7 C 0.089 3.911 8 C -0.324 4.324 9 S 0.259 5.741 10 C 0.270 3.730 11 N -0.639 5.639 12 C 0.699 3.301 13 O -0.558 6.558 14 N -0.722 5.722 15 C 0.131 3.869 16 C -0.122 4.122 17 C 0.024 3.976 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 N -0.522 5.522 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.419 0.581 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.760 -0.170 -7.312 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.305 3.695 4 O -0.397 6.397 5 C -0.144 4.144 6 C -0.068 4.068 7 C -0.043 4.043 8 C -0.465 4.465 9 S 0.509 5.491 10 C -0.098 4.098 11 N -0.291 5.291 12 C 0.397 3.603 13 O -0.434 6.434 14 N -0.375 5.375 15 C 0.009 3.991 16 C -0.160 4.160 17 C -0.014 4.014 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 N -0.246 5.246 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.191 0.809 35 H 0.257 0.743 36 H 0.235 0.765 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.561 0.801 -8.168 30.680 hybrid contribution -0.807 -1.096 1.598 2.099 sum -30.369 -0.295 -6.571 31.073 Atomic orbital electron populations 1.23276 0.76270 1.03760 1.02589 1.86525 1.23530 1.33598 1.84077 1.23916 0.92307 0.81259 0.71971 1.90675 1.67374 1.36313 1.45377 1.21338 0.86689 0.99614 1.06779 1.19927 0.87496 0.94656 1.04691 1.19476 0.96228 0.97236 0.91385 1.27298 0.99694 1.11814 1.07681 1.85235 1.00640 1.43888 1.19294 1.23091 0.89860 0.99879 0.96978 1.41880 1.03533 1.53336 1.30388 1.15904 0.79567 0.81120 0.83676 1.90876 1.77626 1.43245 1.31692 1.45360 1.07166 1.54499 1.30519 1.21728 0.75057 1.01472 1.00826 1.21926 0.98800 0.99046 0.96194 1.19034 0.87234 0.97570 0.97541 1.21219 0.91351 1.31767 1.11872 0.92565 1.25021 0.98026 0.95422 0.95911 1.69963 1.08858 1.40933 1.33404 0.86528 0.80144 0.79478 0.81795 1.19757 1.20979 1.20974 1.66044 1.01468 1.27592 1.29492 0.88062 0.91843 0.91861 0.87546 0.86633 0.89332 0.89259 0.80884 0.74332 0.76470 0.91230 0.91241 0.92523 0.92520 0.96147 0.96143 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.87 10.57 -39.27 -0.41 -3.28 16 3 C 0.46 3.98 7.96 36.01 0.29 4.26 16 4 O -0.51 -5.62 15.73 -18.74 -0.29 -5.91 16 5 C -0.11 -0.75 5.71 -27.88 -0.16 -0.91 16 6 C -0.03 -0.22 5.00 -27.89 -0.14 -0.36 16 7 C 0.09 0.88 6.07 -84.20 -0.51 0.37 16 8 C -0.32 -3.05 11.05 29.05 0.32 -2.73 16 9 S 0.26 3.00 20.21 -107.50 -2.17 0.82 16 10 C 0.27 3.21 8.19 -87.35 -0.72 2.49 16 11 N -0.64 -6.85 5.41 -17.48 -0.09 -6.95 16 12 C 0.70 9.22 8.53 -86.92 -0.74 8.48 16 13 O -0.56 -9.09 13.81 5.30 0.07 -9.02 16 14 N -0.72 -8.83 5.56 -65.22 -0.36 -9.20 16 15 C 0.13 2.05 5.67 -4.04 -0.02 2.02 16 16 C -0.12 -2.17 5.27 -26.73 -0.14 -2.31 16 17 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 18 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 19 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 22 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 N -0.52 -5.88 10.39 -11.28 -0.12 -6.00 16 27 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.34 8.13 -51.93 -0.42 -0.09 16 29 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 30 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.12 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.09 0.62 7.98 -51.93 -0.41 0.21 16 34 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.42 3.27 8.83 -40.82 -0.36 2.91 16 36 H 0.40 3.70 8.49 -40.82 -0.35 3.35 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -33.49 386.36 -9.31 -42.80 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.15 Total: 0.23 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.31 Total: 0.09 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.16 Total: -47.51 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.64 Total: -18.21 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -2.17 Total: 0.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.49 -9.31 -42.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425924635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.466 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds