Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34235 * 116.99777 * 2 1 4 4 O 1.20818 * 120.00309 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99871 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47031 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.47079 * 180.02562 * 6 5 3 8 8 C 1.33417 * 122.71570 * 124.94889 * 7 6 5 9 9 S 1.76172 * 108.06652 * 180.02562 * 8 7 6 10 10 C 1.70968 * 90.34489 * 0.02562 * 9 8 7 11 11 N 1.39006 * 124.94258 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00092 * 0.03053 * 11 10 9 13 13 O 1.21578 * 120.00028 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99605 * 179.97438 * 12 11 10 15 15 C 1.46503 * 119.99662 * 179.97438 * 14 12 11 16 16 C 1.53006 * 109.47153 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47155 * 180.02562 * 16 15 14 18 18 C 1.50693 * 109.47118 * 180.02562 * 17 16 15 19 19 H 1.08007 * 120.00183 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00121 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00324 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00051 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46866 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.46998 * 120.00205 * 22 20 18 25 25 H 1.48497 * 109.46825 * 240.00081 * 22 20 18 26 26 N 1.29623 * 110.10783 * 359.97438 * 10 9 8 27 27 H 1.09000 * 109.47169 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47139 * 300.00527 * 1 2 3 29 29 H 1.09004 * 109.46971 * 60.00283 * 1 2 3 30 30 H 1.09004 * 109.46930 * 60.00149 * 5 3 2 31 31 H 1.09001 * 109.47060 * 300.00369 * 5 3 2 32 32 H 1.08991 * 109.47355 * 60.00015 * 6 5 3 33 33 H 1.09002 * 109.47000 * 299.99769 * 6 5 3 34 34 H 1.07992 * 125.96546 * 0.02562 * 8 7 6 35 35 H 0.97005 * 119.99898 * 180.02562 * 11 10 9 36 36 H 0.96995 * 120.00331 * 0.02562 * 14 12 11 37 37 H 1.08993 * 109.47380 * 300.00626 * 15 14 12 38 38 H 1.09000 * 109.46674 * 60.00502 * 15 14 12 39 39 H 1.08994 * 109.47188 * 300.00975 * 16 15 14 40 40 H 1.09002 * 109.46409 * 60.00371 * 16 15 14 41 41 H 1.09001 * 109.47202 * 300.00457 * 17 16 15 42 42 H 1.09000 * 109.46703 * 60.00611 * 17 16 15 43 43 H 0.96994 * 120.00553 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 6 4.0001 2.7422 0.0011 7 6 5.5050 2.8211 0.0011 8 6 6.1913 3.5013 -0.9188 9 16 7.9069 3.3349 -0.5542 10 6 7.5348 2.3638 0.8028 11 7 8.4727 1.8074 1.6648 12 6 9.7875 2.0206 1.4587 13 8 10.1532 2.6991 0.5185 14 7 10.6967 1.4815 2.2948 15 6 12.1258 1.7127 2.0704 16 6 12.9347 0.9961 3.1536 17 6 14.4272 1.2381 2.9196 18 6 15.2238 0.5318 3.9861 19 1 14.7164 -0.0336 4.7538 20 6 16.6005 0.6073 3.9818 21 7 17.2185 1.2961 3.0474 22 14 17.5880 -0.2677 5.3043 23 1 16.6628 -0.9672 6.2315 24 1 18.4954 -1.2578 4.6707 25 1 18.3909 0.7260 6.0614 26 7 6.2509 2.2219 0.9107 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 3.9564 0.7807 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 3.6101 3.2361 0.8910 33 1 3.6107 3.2365 -0.8889 34 1 5.7690 4.0569 -1.7430 35 1 8.1809 1.2658 2.4148 36 1 10.4049 0.9398 3.0447 37 1 12.4071 1.3262 1.0909 38 1 12.3316 2.7823 2.1117 39 1 12.6533 1.3830 4.1329 40 1 12.7289 -0.0735 3.1127 41 1 14.7088 0.8515 1.9402 42 1 14.6326 2.3078 2.9608 43 1 18.1869 1.3496 3.0446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425924635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = -104.999665 kcal Electronic energy + Delta-G solvation = -25190.185433 eV Core-core repulsion = 21168.330818 eV Total energy + Delta-G solvation = -4021.854615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.124 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80213 -41.51416 -40.60195 -37.67075 -37.27371 -36.23587 -35.27889 -34.21025 -32.97367 -30.67340 -28.78273 -28.56476 -26.40692 -25.51871 -24.29431 -22.68218 -22.30771 -21.84725 -21.10009 -19.48280 -18.77287 -18.61104 -18.43211 -17.85811 -17.61338 -17.39923 -17.24352 -16.61299 -16.27851 -16.09631 -15.54572 -15.45949 -15.10615 -15.02219 -14.36758 -14.27363 -13.94504 -13.91658 -13.73859 -13.58998 -13.32330 -12.82503 -12.77359 -12.69246 -12.51461 -12.33762 -12.27027 -11.88328 -11.78632 -11.66502 -11.59991 -11.50242 -11.23507 -11.13782 -10.74413 -10.53890 -10.30820 -10.17500 -9.17398 -8.17980 -6.28671 -0.19041 0.18770 0.89571 1.15646 1.19401 1.42741 1.43747 1.47653 1.55977 1.80874 2.07703 2.42941 2.88402 3.16548 3.45936 3.78767 3.96481 4.13168 4.13601 4.25218 4.29592 4.33815 4.38918 4.55603 4.57512 4.61963 4.73015 4.78604 4.89246 4.96322 4.97722 5.01577 5.18293 5.23098 5.31374 5.39670 5.52571 5.58334 5.74501 5.87352 6.24746 6.56505 6.69968 6.80666 6.89571 7.13103 7.41073 8.94093 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.024563 B = 0.001499 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.649585 B =18678.943966 C =19638.168918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.538 6.538 5 C -0.100 4.100 6 C -0.022 4.022 7 C 0.079 3.921 8 C -0.306 4.306 9 S 0.224 5.776 10 C 0.254 3.746 11 N -0.625 5.625 12 C 0.701 3.299 13 O -0.590 6.590 14 N -0.710 5.710 15 C 0.148 3.852 16 C -0.103 4.103 17 C 0.022 3.978 18 C -0.539 4.539 19 H 0.066 0.934 20 C -0.001 4.001 21 N -0.934 5.934 22 Si 0.963 3.037 23 H -0.259 1.259 24 H -0.281 1.281 25 H -0.282 1.282 26 N -0.521 5.521 27 H 0.128 0.872 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.200 0.800 35 H 0.433 0.567 36 H 0.418 0.582 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.070 0.930 41 H -0.005 1.005 42 H -0.006 1.006 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.495 -1.391 -6.465 33.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.310 3.690 4 O -0.428 6.428 5 C -0.138 4.138 6 C -0.062 4.062 7 C -0.053 4.053 8 C -0.446 4.446 9 S 0.474 5.526 10 C -0.114 4.114 11 N -0.278 5.278 12 C 0.399 3.601 13 O -0.469 6.469 14 N -0.364 5.364 15 C 0.024 3.976 16 C -0.141 4.141 17 C -0.015 4.015 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.199 4.199 21 N -0.574 5.574 22 Si 0.788 3.212 23 H -0.182 1.182 24 H -0.207 1.207 25 H -0.208 1.208 26 N -0.245 5.245 27 H 0.146 0.854 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.217 0.783 35 H 0.274 0.726 36 H 0.256 0.744 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.013 0.987 42 H 0.013 0.987 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -31.359 -0.463 -7.282 32.197 hybrid contribution -0.384 -0.704 1.282 1.512 sum -31.743 -1.168 -6.000 32.327 Atomic orbital electron populations 1.23531 0.74904 1.05587 1.02541 1.86517 1.24967 1.33183 1.83710 1.24131 0.92735 0.81029 0.71055 1.90664 1.68080 1.37182 1.46883 1.21309 0.85761 0.99192 1.07496 1.19917 0.86034 0.95320 1.04965 1.19802 0.97022 0.97254 0.91235 1.27529 0.98006 1.11101 1.07981 1.85372 1.02776 1.44481 1.19995 1.23204 0.90147 1.00660 0.97409 1.41575 1.02489 1.53159 1.30624 1.15892 0.80247 0.80745 0.83209 1.90872 1.78461 1.44558 1.33031 1.44950 1.05687 1.54716 1.31080 1.21267 0.76668 1.00283 0.99410 1.21613 0.94816 1.00215 0.97448 1.18949 0.91427 0.95464 0.95699 1.21722 0.92012 1.31570 1.12446 0.91558 1.25965 0.99498 0.96249 0.98200 1.70102 1.09180 1.42647 1.35504 0.85421 0.78539 0.78226 0.78982 1.18239 1.20727 1.20750 1.66066 1.01207 1.27491 1.29759 0.85372 0.92037 0.91816 0.86131 0.86490 0.89989 0.88108 0.78272 0.72636 0.74413 0.92361 0.92451 0.91221 0.91153 0.98674 0.98713 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.37 -5.31 10.57 -51.46 -0.54 -5.86 16 3 C 0.47 7.43 7.96 71.24 0.57 8.00 16 4 O -0.54 -11.40 15.73 21.99 0.35 -11.05 16 5 C -0.10 -1.24 5.71 29.85 0.17 -1.07 16 6 C -0.02 -0.32 5.00 29.85 0.15 -0.17 16 7 C 0.08 1.42 6.07 41.44 0.25 1.67 16 8 C -0.31 -5.23 11.05 66.73 0.74 -4.49 16 9 S 0.22 5.06 20.21 -56.49 -1.14 3.92 16 10 C 0.25 5.77 8.19 179.20 1.47 7.24 16 11 N -0.62 -12.62 5.41 -327.47 -1.77 -14.39 16 12 C 0.70 17.91 8.53 179.05 1.53 19.44 16 13 O -0.59 -19.27 13.81 -3.96 -0.05 -19.32 16 14 N -0.71 -16.39 5.56 -478.54 -2.66 -19.05 16 15 C 0.15 4.54 5.67 86.38 0.49 5.03 16 16 C -0.10 -3.58 5.27 30.60 0.16 -3.42 16 17 C 0.02 1.10 4.97 29.85 0.15 1.25 16 18 C -0.54 -29.00 9.11 25.60 0.23 -28.77 16 19 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 21 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 22 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 N -0.52 -10.97 10.39 -189.59 -1.97 -12.94 16 27 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 30 H 0.12 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.12 1.46 8.08 -2.39 -0.02 1.44 16 32 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.10 1.20 7.98 -2.39 -0.02 1.18 16 34 H 0.20 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.43 5.96 8.83 -92.70 -0.82 5.14 16 36 H 0.42 6.73 8.49 -92.71 -0.79 5.95 16 37 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -72.66 386.36 1.52 -71.14 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -0.55 Total: 11.59 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 7.56 Total: 6.54 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -6.12 Total: -101.78 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.25 Total: -36.23 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -1.14 Total: 3.92 kcal Total: -72.66 1.52 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425924635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.859 kcal (2) G-P(sol) polarization free energy of solvation -72.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds